FvH4_6g33181

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000111
Physical Location & Seq
Forward (+)
26266007 .. 26267354
1348 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g33181.t1

Sequence Viewer

Length: 840 bp
ATGCATGAGATTCTATCGAGGCTACCAGTGAAGCCCTTGTGCCGTTTCAAGTTGGTATCAAAGTCATGGCTGTCCTTGATATCGAATCCCAAGTTCATTGCCATGCACTCCAAAGCCATTGAGAATAATAAGGATGTCTTCTTCCAAAGACGAAGACTCGTATTTACTGACAGGCTACATCATTGCCTTTACTCTCTGGACCTGGATCAATTTTTTGACCAGAACCACGAAGTTCTAAAGAATCGTAAGGATAATGTTAATGTTGATGTTGATGGTCCAGTAGCAGTAGCCACCGAGCTCGACTTCGTTTACAATCAGTTTCCAAAGGGACGACGCCAGTGGTTTCCCTTTATCCGTTCTTGCAATAGCTTCTTGTTGTCCCAGTCGTTTTTTGGGTTCCATTTGGTTGACCCTGTAGCCAAGATATCAAAGAAACTACCGAAGACAACAACGGGAAGATTGAAGCCTTGTTTTGGGGAGTTATATGGGTTTGGATTTGATTATTCCACTAAGGAATATAAGGTGGTTATCGGGCAGTTCTTTTCTGATCATGGAATTGTGTTAACTATATATACAATGGAAACTGATTCTTGGCGACGGATTAAGGGTGTCGTTCCCTGCAGACCTACTATAAGTCGTGATGTGATTGTGGTGAATGGAGGTGCTCATTGGTTATTGAGGACACTCGCAGATGAATCGTTACTGATAATCCTATCTTTCGTGCTAGCAGAAAAGACGTCCACTAGTAGAAATAAAGGCTTAAGCGACGGGAAAAAATCGTCGGCTAAATACCAATATTTGTCGCCTTCCGACATAAGCGACGAAATCGGCGTCGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

280

Amino Acids

31.97

Weight (kDa)

9.43

Isoelectric Point (pI)

39.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 2 - 32 1.2e-07 F-box domain
FBA_1 PF07734 159 - 240 5.8e-07 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 740
AclWI GGATC 1 cut(s) 213
AcyI GRCGYC 3 cut(s) 334, 737, 831
AfiI CCNNNNNNNGG 1 cut(s) 473
AflII CTTAAG 1 cut(s) 760
AgsI TTSAA 2 cut(s) 49, 463
AhlI ACTAGT 1 cut(s) 743
AjnI CCWGG 1 cut(s) 201
AluBI AGCT 2 cut(s) 298, 369
AluI AGCT 2 cut(s) 298, 369
Alw21I GWGCWC 2 cut(s) 300, 667
AlwI GGATC 1 cut(s) 213
ArsI GACNNNNNNTTYG 1 cut(s) 816
AspS9I GGNCC 2 cut(s) 199, 275
AsuHPI GGTGA 1 cut(s) 664
AsuNHI GCTAGC 1 cut(s) 724
AvaII GGWCC 2 cut(s) 199, 275
BanII GRGCYC 1 cut(s) 300
BbsI GAAGAC 3 cut(s) 130, 160, 449
Bbv12I GWGCWC 2 cut(s) 300, 667
BccI CCATC 1 cut(s) 266
BceAI ACGGC 1 cut(s) 27
BcgI CGANNNNNNTGC 2 cut(s) 678, 712
BciT130I CCWGG 1 cut(s) 203
BclI TGATCA 1 cut(s) 547
BcuI ACTAGT 1 cut(s) 743
BfaI CTAG 2 cut(s) 725, 744
BfmI CTRYAG 2 cut(s) 414, 619
BfrI CTTAAG 1 cut(s) 760
Bme1390I CCNGG 1 cut(s) 203
Bme18I GGWCC 2 cut(s) 199, 275
BmgT120I GGNCC 2 cut(s) 199, 275
BmiI GGNNCC 1 cut(s) 398
BmrFI CCNGG 1 cut(s) 203
BmrI ACTGGG 1 cut(s) 376
BmtI GCTAGC 1 cut(s) 728
BmuI ACTGGG 1 cut(s) 376
BpiI GAAGAC 3 cut(s) 130, 160, 449
BsaHI GRCGYC 3 cut(s) 334, 737, 831
Bsc4I CCNNNNNNNGG 1 cut(s) 473
Bse1I ACTGG 4 cut(s) 26, 278, 337, 382
Bse3DI GCAATG 2 cut(s) 96, 181
BseBI CCWGG 1 cut(s) 203
BseGI GGATG 1 cut(s) 139
BseLI CCNNNNNNNGG 1 cut(s) 473
BseMI GCAATG 2 cut(s) 96, 181
BseNI ACTGG 4 cut(s) 26, 278, 337, 382
BsiHKAI GWGCWC 2 cut(s) 300, 667
BslFI GGGAC 2 cut(s) 342, 364
BslI CCNNNNNNNGG 1 cut(s) 473
BsmFI GGGAC 2 cut(s) 342, 364
Bsp1286I GDGCHC 2 cut(s) 300, 667
Bsp143I GATC 2 cut(s) 205, 547
BspLI GGNNCC 1 cut(s) 398
BspMAI CTGCAG 1 cut(s) 623
BspOI GCTAGC 1 cut(s) 728
BspPI GGATC 1 cut(s) 213
BspTI CTTAAG 1 cut(s) 760
BsrDI GCAATG 2 cut(s) 96, 181
BsrI ACTGG 4 cut(s) 26, 278, 337, 382
BssMI GATC 2 cut(s) 205, 547
BssNI GRCGYC 3 cut(s) 334, 737, 831
Bst2UI CCWGG 1 cut(s) 203
BstACI GRCGYC 3 cut(s) 334, 737, 831
BstAFI CTTAAG 1 cut(s) 760
BstC8I GCNNGC 1 cut(s) 726
BstDEI CTNAG 1 cut(s) 510
BstF5I GGATG 1 cut(s) 139
BstKTI GATC 2 cut(s) 208, 550
BstMBI GATC 2 cut(s) 205, 547
BstNI CCWGG 1 cut(s) 203
BstSCI CCNGG 1 cut(s) 201
BstSFI CTRYAG 2 cut(s) 414, 619
BstV2I GAAGAC 3 cut(s) 130, 160, 449
BtsCI GGATG 1 cut(s) 139
BtsIMutI CAGTG 2 cut(s) 33, 344
Cac8I GCNNGC 1 cut(s) 726
Cfr13I GGNCC 2 cut(s) 199, 275
CseI GACGC 2 cut(s) 342, 820
CviAII CATG 4 cut(s) 5, 66, 103, 551
DdeI CTNAG 1 cut(s) 510
DpnI GATC 2 cut(s) 207, 549
DpnII GATC 2 cut(s) 205, 547
Ecl136II GAGCTC 1 cut(s) 298
Eco24I GRGCYC 1 cut(s) 300
Eco32I GATATC 2 cut(s) 81, 426
Eco47I GGWCC 2 cut(s) 199, 275
Eco53kI GAGCTC 1 cut(s) 298
EcoICRI GAGCTC 1 cut(s) 298
EcoRII CCWGG 1 cut(s) 201
EcoRV GATATC 2 cut(s) 81, 426
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 300
FaeI CATG 4 cut(s) 8, 69, 106, 554
FalI AAGNNNNNCTT 2 cut(s) 122, 154
FaqI GGGAC 2 cut(s) 342, 364
FatI CATG 4 cut(s) 4, 65, 102, 550
FbaI TGATCA 1 cut(s) 547
FokI GGATG 1 cut(s) 146
FriOI GRGCYC 1 cut(s) 300
FspBI CTAG 2 cut(s) 725, 744
HgaI GACGC 2 cut(s) 342, 820
Hin1I GRCGYC 3 cut(s) 334, 737, 831
Hin1II CATG 4 cut(s) 8, 69, 106, 554
HincII GTYRAC 2 cut(s) 409, 564
HindII GTYRAC 2 cut(s) 409, 564
HinfI GANTC 6 cut(s) 10, 85, 156, 241, 587, 695
HpaI GTTAAC 1 cut(s) 564
HphI GGTGA 1 cut(s) 664
Hpy166II GTNNAC 4 cut(s) 310, 409, 564, 741
Hpy188I TCNGA 2 cut(s) 547, 811
Hpy188III TCNNGA 2 cut(s) 197, 638
Hpy8I GTNNAC 4 cut(s) 310, 409, 564, 741
Hpy99I CGWCG 6 cut(s) 336, 600, 770, 784, 824, 836
HpyAV CCTTC 1 cut(s) 816
HpyCH4IV ACGT 1 cut(s) 737
HpyCH4V TGCA 4 cut(s) 4, 106, 363, 621
HpyF3I CTNAG 1 cut(s) 510
HpySE526I ACGT 1 cut(s) 737
Hsp92I GRCGYC 3 cut(s) 334, 737, 831
Hsp92II CATG 4 cut(s) 8, 69, 106, 554
Ksp22I TGATCA 1 cut(s) 547
KspAI GTTAAC 1 cut(s) 564
Kzo9I GATC 2 cut(s) 205, 547
MaeI CTAG 2 cut(s) 725, 744
MaeII ACGT 1 cut(s) 737
MaeIII GTNAC 1 cut(s) 699
MalI GATC 2 cut(s) 207, 549
MboI GATC 2 cut(s) 205, 547
MboII GAAGA 5 cut(s) 130, 133, 165, 454, 468
MhlI GDGCHC 2 cut(s) 300, 667
MluCI AATT 2 cut(s) 209, 555
MlyI GAGTC 1 cut(s) 150
MmeI TCCRAC 1 cut(s) 834
MnlI CCTC 3 cut(s) 12, 653, 672
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 5 cut(s) 258, 563, 603, 761, 838
MslI CAYNNNNRTG 1 cut(s) 101
MspCI CTTAAG 1 cut(s) 760
MspR9I CCNGG 1 cut(s) 203
MvaI CCWGG 1 cut(s) 203
NdeII GATC 2 cut(s) 205, 547
NheI GCTAGC 1 cut(s) 724
NlaIII CATG 4 cut(s) 8, 69, 106, 554
NlaIV GGNNCC 1 cut(s) 398
NsiI ATGCAT 1 cut(s) 6
PcsI WCGNNNNNNNCGW 1 cut(s) 828
PfeI GAWTC 5 cut(s) 10, 85, 241, 587, 695
PleI GAGTC 1 cut(s) 150
PpsI GAGTC 1 cut(s) 150
Psp124BI GAGCTC 1 cut(s) 300
Psp6I CCWGG 1 cut(s) 201
PspGI CCWGG 1 cut(s) 201
PspN4I GGNNCC 1 cut(s) 398
PspPI GGNCC 2 cut(s) 199, 275
PstI CTGCAG 1 cut(s) 623
RseI CAYNNNNRTG 1 cut(s) 101
SacI GAGCTC 1 cut(s) 300
SaqAI TTAA 5 cut(s) 258, 563, 603, 761, 838
Sau3AI GATC 2 cut(s) 205, 547
Sau96I GGNCC 2 cut(s) 199, 275
SchI GAGTC 1 cut(s) 150
ScrFI CCNGG 1 cut(s) 203
SduI GDGCHC 2 cut(s) 300, 667
SetI ASST 7 cut(s) 204, 300, 371, 525, 628, 664, 740
SfcI CTRYAG 2 cut(s) 414, 619
SinI GGWCC 2 cut(s) 199, 275
SmiMI CAYNNNNRTG 1 cut(s) 101
SmlI CTYRAG 1 cut(s) 760
SmoI CTYRAG 1 cut(s) 760
SpeI ACTAGT 1 cut(s) 743
Sse9I AATT 2 cut(s) 209, 555
SspI AATATT 1 cut(s) 797
SspMI CTAG 2 cut(s) 725, 744
SstI GAGCTC 1 cut(s) 300
StyD4I CCNGG 1 cut(s) 201
TaiI ACGT 1 cut(s) 740
TaqI TCGA 3 cut(s) 17, 83, 300
TasI AATT 2 cut(s) 209, 555
TfiI GAWTC 5 cut(s) 10, 85, 241, 587, 695
Tru1I TTAA 5 cut(s) 258, 563, 603, 761, 838
Tru9I TTAA 5 cut(s) 258, 563, 603, 761, 838
TscAI CASTG 2 cut(s) 33, 344
TspDTI ATGAA 2 cut(s) 85, 708
TspGWI ACGGA 2 cut(s) 344, 613
TspRI CASTG 2 cut(s) 33, 344
Vha464I CTTAAG 1 cut(s) 760
VpaK11BI GGWCC 2 cut(s) 199, 275
XcmI CCANNNNNNNNNTGG 1 cut(s) 389
XspI CTAG 2 cut(s) 725, 744
ZraI GACGTC 1 cut(s) 738
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.