FvH4_4g32891

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000111
Physical Location & Seq
Forward (+)
31335283 .. 31336718
1436 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g32891.t1

Sequence Viewer

Length: 1173 bp
ATGGAGGAGGAGTTGACGGGAAAACAAATCGATCTTCCACCGGAGGTGATGCATGAGATTCTATCAAGGCTACCAGTGAAGCCCTTGTGCCGTTTCAAGTTGGTTTCAAAGCCTTGGCTGTCCTTAATCTCGAATCCCAAGTTCATTGCCATGCACTCCGAAGCCATTGAGAATAATAAGGATGTCTTCTCCCAAAGACGAAGGCTCGTATTTACTGACGGGGAAAATCATTGTCTTTACTCTTTGGACCTGGATCAATTTCTTGACCACAACCACGCAGTTTTAAAGAATCGAAAGCCTAATGAAGATGTTGATGGTCCAGTAGCAGTAGCCACCGAGCTCGACTTCGTTTACAATCTGTTTCCACTGGGACGACGCCGTTGGTTTCCCTTTATCCATTCTTGCAATAGCTTGTTGTTGTCCGAGTCGTTTTATGGGTACCATTTGATTAACCCTGTAGCCAAGGAATTAAAGAAACTACCGAAGACACCAACATGGAGAGTGAAGCCTGGTTTTGGGGACTTATATGGGTTCGGATATGATTACTCTACTAAGGAATATAAGGTAGTTATTGGGCAGTTCTTTTATGGTCATGGAACTGTGTTCAGTGTCTATACATTGGAAACTGATTCTTGGCGACGGATCAAGGGTCTTCCCTGCATACCTACTCCAGATCTAAGTCGTGATGGGATTGTGGTGAATGGAGGTGTTCATTGGTTATTGAGGAGAGTCGCAGATGAATCGATGCTGATGATCCTATCTTTCACGCTAGCAGAAGACAAGTTTAGAATAATTCCACTACCTTCGTCAATTGGGAGTACTGGATCGATTAAACTAGGGGTTTTTAGAGACTGGCTATGTATAACATTTTCATCAGCATCCACCGAGGTAAAAACATATAACGAGTTTTGGGTTATGAAGGAATACGGAGTGAGAGAGTCATGGACTAGAATGCGAGTCTCCATTCCGTATCACACATTATCACATTCTGGATTTTGGAGAGGATCTTATGATCTAATGGTGTTTGATAGATCATCCTTGGTTATGTACAATTTTAATGATGAGGAATTTTGGACTTTACCAATCAAGGATATTGGCAAAGTTGGTAGATTTGGTAGTGTTGGTATCTATGTTGAGAGCCTTGCTTCGGTTATTACTCAAGATCGTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

391

Amino Acids

44.99

Weight (kDa)

7.68

Isoelectric Point (pI)

41.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 11 - 48 3.3e-10 F-box domain
F-box-like PF12937 11 - 46 1.7e-07 F-box-like
FBA_3 PF08268 129 - 326 1.8e-18 F-box associated beta propeller domain
FBA_1 PF07734 133 - 331 8.2e-19 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 438
AccB1I GGYRCC 1 cut(s) 438
AclWI GGATC 5 cut(s) 261, 650, 748, 832, 1012
AcsI RAATTY 1 cut(s) 1067
AcyI GRCGYC 1 cut(s) 376
AfaI GTAC 3 cut(s) 440, 820, 1049
AfiI CCNNNNNNNGG 2 cut(s) 515, 1147
AgsI TTSAA 2 cut(s) 97, 108
AjnI CCWGG 2 cut(s) 249, 508
AluBI AGCT 2 cut(s) 340, 411
AluI AGCT 2 cut(s) 340, 411
Alw21I GWGCWC 1 cut(s) 342
Alw26I GTCTC 2 cut(s) 843, 964
AlwI GGATC 5 cut(s) 261, 650, 748, 832, 1012
ApoI RAATTY 1 cut(s) 1067
Asp718I GGTACC 1 cut(s) 438
AspS9I GGNCC 2 cut(s) 247, 317
AsuHPI GGTGA 2 cut(s) 58, 709
AsuNHI GCTAGC 1 cut(s) 769
AvaII GGWCC 2 cut(s) 247, 317
BanI GGYRCC 1 cut(s) 438
BanII GRGCYC 1 cut(s) 342
BbsI GAAGAC 4 cut(s) 178, 491, 644, 783
Bbv12I GWGCWC 1 cut(s) 342
BccI CCATC 2 cut(s) 308, 680
BceAI ACGGC 2 cut(s) 75, 363
BcgI CGANNNNNNTGC 2 cut(s) 723, 757
BciT130I CCWGG 2 cut(s) 251, 510
BcoDI GTCTC 2 cut(s) 843, 964
BfaI CTAG 3 cut(s) 770, 836, 948
BfmI CTRYAG 1 cut(s) 456
BglII AGATCT 1 cut(s) 673
BmcAI AGTACT 1 cut(s) 820
Bme1390I CCNGG 2 cut(s) 251, 510
Bme18I GGWCC 2 cut(s) 247, 317
BmgT120I GGNCC 2 cut(s) 247, 317
BmiI GGNNCC 1 cut(s) 440
BmrFI CCNGG 2 cut(s) 251, 510
BmrI ACTGGG 1 cut(s) 377
BmsI GCATC 3 cut(s) 39, 735, 887
BmtI GCTAGC 1 cut(s) 773
BmuI ACTGGG 1 cut(s) 377
BpiI GAAGAC 4 cut(s) 178, 491, 644, 783
BpmI CTGGAG 1 cut(s) 654
BpuEI CTTGAG 1 cut(s) 1143
Bsa29I ATCGAT 3 cut(s) 30, 743, 827
BsaHI GRCGYC 1 cut(s) 376
BsaJI CCNNGG 4 cut(s) 113, 462, 885, 1038
BsaWI WCCGGW 1 cut(s) 40
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 2 cut(s) 515, 1147
Bse1I ACTGG 5 cut(s) 74, 320, 372, 826, 857
Bse3DI GCAATG 1 cut(s) 144
BseBI CCWGG 2 cut(s) 251, 510
BseCI ATCGAT 3 cut(s) 30, 743, 827
BseDI CCNNGG 4 cut(s) 113, 462, 885, 1038
BseGI GGATG 3 cut(s) 187, 878, 1034
BseLI CCNNNNNNNGG 2 cut(s) 515, 1147
BseMI GCAATG 1 cut(s) 144
BseNI ACTGG 5 cut(s) 74, 320, 372, 826, 857
BseRI GAGGAG 3 cut(s) 20, 23, 739
BshNI GGYRCC 1 cut(s) 438
BshVI ATCGAT 3 cut(s) 30, 743, 827
BsiHKAI GWGCWC 1 cut(s) 342
BsiSI CCGG 1 cut(s) 41
BslFI GGGAC 2 cut(s) 384, 533
BslI CCNNNNNNNGG 2 cut(s) 515, 1147
BsmAI GTCTC 2 cut(s) 843, 964
BsmFI GGGAC 2 cut(s) 384, 533
BsmI GAATGC 1 cut(s) 957
Bsp1286I GDGCHC 1 cut(s) 342
Bsp1407I TGTACA 1 cut(s) 1047
BspDI ATCGAT 3 cut(s) 30, 743, 827
BspLI GGNNCC 1 cut(s) 440
BspOI GCTAGC 1 cut(s) 773
BspPI GGATC 5 cut(s) 261, 650, 748, 832, 1012
BspT107I GGYRCC 1 cut(s) 438
BsrDI GCAATG 1 cut(s) 144
BsrGI TGTACA 1 cut(s) 1047
BsrI ACTGG 5 cut(s) 74, 320, 372, 826, 857
BssECI CCNNGG 4 cut(s) 113, 462, 885, 1038
BssNI GRCGYC 1 cut(s) 376
BssT1I CCWWGG 3 cut(s) 113, 462, 1038
Bst2UI CCWGG 2 cut(s) 251, 510
Bst4CI ACNGT 1 cut(s) 601
BstACI GRCGYC 1 cut(s) 376
BstAUI TGTACA 1 cut(s) 1047
BstC8I GCNNGC 1 cut(s) 771
BstDEI CTNAG 2 cut(s) 552, 677
BstF5I GGATG 3 cut(s) 187, 878, 1034
BstMAI GTCTC 2 cut(s) 843, 964
BstNI CCWGG 2 cut(s) 251, 510
BstSCI CCNGG 2 cut(s) 249, 508
BstSFI CTRYAG 1 cut(s) 456
BstV2I GAAGAC 4 cut(s) 178, 491, 644, 783
BstX2I RGATCY 2 cut(s) 673, 1004
BstYI RGATCY 2 cut(s) 673, 1004
Bsu15I ATCGAT 3 cut(s) 30, 743, 827
BsuTUI ATCGAT 3 cut(s) 30, 743, 827
BtsCI GGATG 3 cut(s) 187, 878, 1034
BtsIMutI CAGTG 3 cut(s) 81, 365, 613
Cac8I GCNNGC 1 cut(s) 771
Cfr13I GGNCC 2 cut(s) 247, 317
ClaI ATCGAT 3 cut(s) 30, 743, 827
CseI GACGC 1 cut(s) 384
Csp6I GTAC 3 cut(s) 439, 819, 1048
CviAII CATG 5 cut(s) 53, 151, 495, 593, 942
CviQI GTAC 3 cut(s) 439, 819, 1048
DdeI CTNAG 2 cut(s) 552, 677
DraI TTTAAA 1 cut(s) 285
Ecl136II GAGCTC 1 cut(s) 340
Eco130I CCWWGG 3 cut(s) 113, 462, 1038
Eco24I GRGCYC 1 cut(s) 342
Eco47I GGWCC 2 cut(s) 247, 317
Eco53kI GAGCTC 1 cut(s) 340
EcoICRI GAGCTC 1 cut(s) 340
EcoRII CCWGG 2 cut(s) 249, 508
EcoT14I CCWWGG 3 cut(s) 113, 462, 1038
EcoT22I ATGCAT 1 cut(s) 54
EcoT38I GRGCYC 1 cut(s) 342
ErhI CCWWGG 3 cut(s) 113, 462, 1038
FaeI CATG 5 cut(s) 56, 154, 498, 596, 945
FalI AAGNNNNNCTT 2 cut(s) 170, 202
FaqI GGGAC 2 cut(s) 384, 533
FatI CATG 5 cut(s) 52, 150, 494, 592, 941
FokI GGATG 3 cut(s) 194, 865, 1021
FriOI GRGCYC 1 cut(s) 342
FspBI CTAG 3 cut(s) 770, 836, 948
GsuI CTGGAG 1 cut(s) 654
HapII CCGG 1 cut(s) 41
HgaI GACGC 1 cut(s) 384
Hin1I GRCGYC 1 cut(s) 376
Hin1II CATG 5 cut(s) 56, 154, 498, 596, 945
HincII GTYRAC 1 cut(s) 15
HindII GTYRAC 1 cut(s) 15
HinfI GANTC 9 cut(s) 58, 133, 289, 425, 629, 729, 740, 938, 957
HpaII CCGG 1 cut(s) 41
HphI GGTGA 2 cut(s) 58, 709
Hpy166II GTNNAC 2 cut(s) 15, 352
Hpy188I TCNGA 3 cut(s) 160, 424, 536
Hpy188III TCNNGA 6 cut(s) 130, 263, 671, 683, 990, 1160
Hpy8I GTNNAC 2 cut(s) 15, 352
Hpy99I CGWCG 2 cut(s) 378, 642
HpyAV CCTTC 3 cut(s) 195, 813, 913
HpyCH4III ACNGT 1 cut(s) 601
HpyCH4V TGCA 4 cut(s) 52, 154, 405, 660
HpyF3I CTNAG 2 cut(s) 552, 677
Hsp92I GRCGYC 1 cut(s) 376
Hsp92II CATG 5 cut(s) 56, 154, 498, 596, 945
KpnI GGTACC 1 cut(s) 442
LweI GCATC 3 cut(s) 39, 735, 887
MaeI CTAG 3 cut(s) 770, 836, 948
MboII GAAGA 6 cut(s) 26, 178, 317, 496, 644, 788
MfeI CAATTG 1 cut(s) 810
MflI RGATCY 2 cut(s) 673, 1004
MhlI GDGCHC 1 cut(s) 342
MluCI AATT 6 cut(s) 257, 467, 792, 810, 1051, 1067
MlyI GAGTC 4 cut(s) 434, 738, 947, 966
MnlI CCTC 6 cut(s) 37, 698, 717, 880, 995, 1057
Mph1103I ATGCAT 1 cut(s) 54
MseI TTAA 6 cut(s) 125, 284, 450, 470, 831, 1056
MslI CAYNNNNRTG 2 cut(s) 149, 493
MspI CCGG 1 cut(s) 41
MspR9I CCNGG 2 cut(s) 251, 510
MunI CAATTG 1 cut(s) 810
Mva1269I GAATGC 1 cut(s) 957
MvaI CCWGG 2 cut(s) 251, 510
NheI GCTAGC 1 cut(s) 769
NlaIII CATG 5 cut(s) 56, 154, 498, 596, 945
NlaIV GGNNCC 1 cut(s) 440
NsiI ATGCAT 1 cut(s) 54
PctI GAATGC 1 cut(s) 957
PfeI GAWTC 5 cut(s) 58, 133, 289, 629, 740
PleI GAGTC 4 cut(s) 433, 737, 946, 965
PpsI GAGTC 4 cut(s) 433, 737, 946, 965
Psp124BI GAGCTC 1 cut(s) 342
Psp6I CCWGG 2 cut(s) 249, 508
PspGI CCWGG 2 cut(s) 249, 508
PspN4I GGNNCC 1 cut(s) 440
PspPI GGNCC 2 cut(s) 247, 317
PsuI RGATCY 2 cut(s) 673, 1004
RsaI GTAC 3 cut(s) 440, 820, 1049
RsaNI GTAC 3 cut(s) 439, 819, 1048
RseI CAYNNNNRTG 2 cut(s) 149, 493
SacI GAGCTC 1 cut(s) 342
SaqAI TTAA 6 cut(s) 125, 284, 450, 470, 831, 1056
Sau96I GGNCC 2 cut(s) 247, 317
ScaI AGTACT 1 cut(s) 820
SchI GAGTC 4 cut(s) 434, 738, 947, 966
ScrFI CCNGG 2 cut(s) 251, 510
SduI GDGCHC 1 cut(s) 342
SetI ASST 9 cut(s) 48, 252, 342, 413, 567, 667, 709, 805, 891
SfaNI GCATC 3 cut(s) 39, 735, 887
SfcI CTRYAG 1 cut(s) 456
SinI GGWCC 2 cut(s) 247, 317
SmiMI CAYNNNNRTG 2 cut(s) 149, 493
SmlI CTYRAG 1 cut(s) 1158
SmoI CTYRAG 1 cut(s) 1158
Sse9I AATT 6 cut(s) 257, 467, 792, 810, 1051, 1067
SspMI CTAG 3 cut(s) 770, 836, 948
SstI GAGCTC 1 cut(s) 342
StyD4I CCNGG 2 cut(s) 249, 508
StyI CCWWGG 3 cut(s) 113, 462, 1038
TaaI ACNGT 1 cut(s) 601
TaqI TCGA 6 cut(s) 30, 131, 292, 342, 743, 827
TasI AATT 6 cut(s) 257, 467, 792, 810, 1051, 1067
TatI WGTACW 2 cut(s) 818, 1047
TfiI GAWTC 5 cut(s) 58, 133, 289, 629, 740
Tru1I TTAA 6 cut(s) 125, 284, 450, 470, 831, 1056
Tru9I TTAA 6 cut(s) 125, 284, 450, 470, 831, 1056
TscAI CASTG 3 cut(s) 81, 372, 613
TspDTI ATGAA 6 cut(s) 133, 318, 701, 753, 861, 932
TspGWI ACGGA 3 cut(s) 655, 942, 957
TspRI CASTG 3 cut(s) 81, 372, 613
VpaK11BI GGWCC 2 cut(s) 247, 317
XapI RAATTY 1 cut(s) 1067
XspI CTAG 3 cut(s) 770, 836, 948
ZrmI AGTACT 1 cut(s) 820
Zsp2I ATGCAT 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.