MD10G1202200.v1.1

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0000111
Physical Location & Seq
Forward (+)
30001149 .. 30003551
2403 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1202200.v1.1.491

Sequence Viewer

Length: 1143 bp
ATGGATATCATTGCCGATATACTCTCTCGACTTCCTCTCAAGTCAGTGTGCCGATTCAGGTGCATATCAAAGTCATGGCTCCGTCTAACCAGTGAACCCAACTTCACCAAAACCCATCTAGATCGGTTCCAGAAGCAAAAAATCATTTTCAGTTCTGAAAATTCGTTATTCTCCTTGGACCCTGAAGCACCTATAGATGATGATATGTTGCCATTGGAGATTGATTTTCCACTCAAGAACCACCCCAACACTGAGTGGGTTCATGTGTTTGGTACTTCCAATGGTTTGGTCTGCATCATGCCTCAGCCAGAAACCTTCTTTATATTCAATCCTACCACTAGAGAGTCCTTGAGAGTGCCAGATTGCCCCATTCCAAGTCATAAATGTCCTCCACAACCTCAAGAAGTAGGGTTCAATCATGCATATGGTTTTGGTTATGCTCATTCTGTTGATGATTACAAGTTTTTCACGATTGCTTATGGGTGCATGATTCTCATTTTTTCATTGAGAAGCAATTCGTGGAAAAGGGTTCAAGACTTTCCTTACAAACATCATTTGGAGGGTTCAGGGACGTTTCTCAATGGAACTGTCCATTGGTTATGCGGACAGCTTGAAAATGGTGGTAACTGCGTCATTGCTGCTTTTGATTTAGCGGAGGAGAAGTTCTCAGACTTGCCCACACCTAATTCTGTCACTGATTATCAGACGTTTACAACTGGCGTTCTGGAAGGGAGTCTTTGTTTACTATACCAGCATAATAGAGAATACTCATTTTGGGTTATGAAGGATTATGGTGTGAAAGAGTCGTGGACTAGAATTTTTATAGCTGAACCATATTTGTCTACTTCTTTGAAGCCATTATGTTACTGGAAGAATAACAAGATCTTACTGGCGAGGAGTTGGAAACAGTTACTTCTGTGCAATCCAAATGATGGGACTTGCAAAAATTTCTTGGCAAATGGCCTTCCAGATAAATTCTGTGCTGATGTGTATGTGGAGAGCCTCATCTCACCGAGTTATCACAAGAATTTGCAGTTGCGTCTAATTCCGATTACATTCTACACATTTCTACTCCTAGTGAATATGAACTACTTGCTTCTTGTAACTGAGCTGAGCAAGGTTCTGACCAAGACAAGTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

381

Amino Acids

43.68

Weight (kDa)

6.59

Isoelectric Point (pI)

35.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 2 - 37 6.7e-07 F-box domain
FBA_1 PF07734 76 - 311 4.2e-21 F-box associated beta propeller domain
FBA_3 PF08268 81 - 279 7.6e-19 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 932
AccI GTMKAC 1 cut(s) 842
AciI CCGC 2 cut(s) 603, 653
AcsI RAATTY 5 cut(s) 160, 816, 946, 974, 1027
AcuI CTGAAG 1 cut(s) 204
AdeI CACNNNGTG 1 cut(s) 255
AfaI GTAC 1 cut(s) 274
AfiI CCNNNNNNNGG 1 cut(s) 932
AgsI TTSAA 5 cut(s) 328, 415, 533, 614, 853
AjuI GAANNNNNNNTTGG 2 cut(s) 577, 609
AloI GAACNNNNNNTCC 2 cut(s) 647, 679
AluBI AGCT 3 cut(s) 610, 827, 1111
AluI AGCT 3 cut(s) 610, 827, 1111
AoxI GGCC 1 cut(s) 961
ApeKI GCWGC 1 cut(s) 638
ApoI RAATTY 5 cut(s) 160, 816, 946, 974, 1027
Asp700I GAANNNNTTC 1 cut(s) 514
AspS9I GGNCC 1 cut(s) 178
AsuHPI GGTGA 2 cut(s) 97, 1002
AvaII GGWCC 1 cut(s) 178
BbvCI CCTCAGC 1 cut(s) 303
BbvI GCAGC 1 cut(s) 625
BccI CCATC 2 cut(s) 123, 926
BcgI CGANNNNNNTGC 2 cut(s) 42, 76
BfaI CTAG 4 cut(s) 119, 339, 813, 1076
BfmI CTRYAG 1 cut(s) 192
BglII AGATCT 1 cut(s) 882
BisI GCNGC 1 cut(s) 639
BlpI GCTNAGC 1 cut(s) 1112
BlsI GCNGC 1 cut(s) 640
Bme18I GGWCC 1 cut(s) 178
BmgT120I GGNCC 1 cut(s) 178
BmiI GGNNCC 3 cut(s) 80, 128, 180
BmsI GCATC 1 cut(s) 303
BplI GAGNNNNNCTC 2 cut(s) 650, 682
Bpu10I CCTNAGC 1 cut(s) 303
Bpu1102I GCTNAGC 1 cut(s) 1112
BpuEI CTTGAG 4 cut(s) 23, 218, 370, 384
BsaJI CCNNGG 1 cut(s) 174
BsaXI ACNNNNNCTCC 4 cut(s) 647, 677, 724, 754
Bsc4I CCNNNNNNNGG 1 cut(s) 932
Bse1I ACTGG 4 cut(s) 90, 721, 872, 894
Bse3DI GCAATG 2 cut(s) 9, 633
BseDI CCNNGG 1 cut(s) 174
BseLI CCNNNNNNNGG 1 cut(s) 932
BseMI GCAATG 2 cut(s) 9, 633
BseMII CTCAG 5 cut(s) 243, 317, 681, 1098, 1103
BseNI ACTGG 4 cut(s) 90, 721, 872, 894
BseRI GAGGAG 2 cut(s) 671, 910
BseXI GCAGC 1 cut(s) 625
BshFI GGCC 1 cut(s) 963
BslFI GGGAC 2 cut(s) 583, 949
BslI CCNNNNNNNGG 1 cut(s) 932
BsmFI GGGAC 2 cut(s) 583, 949
BsnI GGCC 1 cut(s) 963
Bsp143I GATC 2 cut(s) 121, 882
Bsp1720I GCTNAGC 1 cut(s) 1112
BspACI CCGC 2 cut(s) 603, 653
BspANI GGCC 1 cut(s) 963
BspCNI CTCAG 5 cut(s) 244, 316, 680, 1099, 1104
BspLI GGNNCC 3 cut(s) 80, 128, 180
BsrDI GCAATG 2 cut(s) 9, 633
BsrI ACTGG 4 cut(s) 90, 721, 872, 894
BssECI CCNNGG 1 cut(s) 174
BssMI GATC 2 cut(s) 121, 882
BssT1I CCWWGG 1 cut(s) 174
Bst4CI ACNGT 2 cut(s) 589, 909
BstDEI CTNAG 5 cut(s) 252, 303, 667, 1107, 1112
BstKTI GATC 2 cut(s) 124, 885
BstMBI GATC 2 cut(s) 121, 882
BstSFI CTRYAG 1 cut(s) 192
BstV1I GCAGC 1 cut(s) 625
BstX2I RGATCY 1 cut(s) 882
BstXI CCANNNNNNTGG 1 cut(s) 286
BstYI RGATCY 1 cut(s) 882
BsuRI GGCC 1 cut(s) 963
BtsIMutI CAGTG 4 cut(s) 51, 97, 249, 693
Cfr13I GGNCC 1 cut(s) 178
CseI GACGC 2 cut(s) 619, 1028
Csp6I GTAC 1 cut(s) 273
CviAII CATG 5 cut(s) 75, 263, 298, 419, 487
CviJI RGCY 8 cut(s) 79, 307, 610, 827, 856, 963, 1002, 1111
CviKI_1 RGCY 8 cut(s) 79, 307, 610, 827, 856, 963, 1002, 1111
CviQI GTAC 1 cut(s) 273
DdeI CTNAG 5 cut(s) 252, 303, 667, 1107, 1112
DpnI GATC 2 cut(s) 123, 884
DpnII GATC 2 cut(s) 121, 882
DraIII CACNNNGTG 1 cut(s) 255
Eco130I CCWWGG 1 cut(s) 174
Eco32I GATATC 1 cut(s) 7
Eco47I GGWCC 1 cut(s) 178
Eco57I CTGAAG 1 cut(s) 204
EcoRV GATATC 1 cut(s) 7
EcoT14I CCWWGG 1 cut(s) 174
EcoT22I ATGCAT 1 cut(s) 424
ErhI CCWWGG 1 cut(s) 174
FaeI CATG 5 cut(s) 78, 266, 301, 422, 490
FalI AAGNNNNNCTT 2 cut(s) 720, 752
FaqI GGGAC 2 cut(s) 583, 949
FatI CATG 5 cut(s) 74, 262, 297, 418, 486
FauNDI CATATG 1 cut(s) 424
FblI GTMKAC 1 cut(s) 842
Fnu4HI GCNGC 1 cut(s) 639
Fsp4HI GCNGC 1 cut(s) 639
FspBI CTAG 4 cut(s) 119, 339, 813, 1076
GluI GCNGC 1 cut(s) 639
HaeIII GGCC 1 cut(s) 963
HgaI GACGC 2 cut(s) 619, 1028
Hin1II CATG 5 cut(s) 78, 266, 301, 422, 490
HinfI GANTC 5 cut(s) 54, 344, 490, 733, 803
HphI GGTGA 2 cut(s) 97, 1002
Hpy166II GTNNAC 5 cut(s) 95, 711, 743, 810, 843
Hpy188I TCNGA 5 cut(s) 157, 670, 705, 1050, 1125
Hpy188III TCNNGA 9 cut(s) 27, 119, 130, 235, 401, 469, 533, 725, 968
Hpy8I GTNNAC 5 cut(s) 95, 711, 743, 810, 843
HpyAV CCTTC 4 cut(s) 325, 722, 778, 974
HpyCH4III ACNGT 2 cut(s) 589, 909
HpyCH4IV ACGT 2 cut(s) 572, 707
HpyCH4V TGCA 7 cut(s) 63, 294, 422, 486, 921, 942, 1033
HpyF3I CTNAG 5 cut(s) 252, 303, 667, 1107, 1112
HpySE526I ACGT 2 cut(s) 572, 707
Hsp92II CATG 5 cut(s) 78, 266, 301, 422, 490
Kzo9I GATC 2 cut(s) 121, 882
LmnI GCTCC 1 cut(s) 84
Lsp1109I GCAGC 1 cut(s) 625
LweI GCATC 1 cut(s) 303
MaeI CTAG 4 cut(s) 119, 339, 813, 1076
MaeII ACGT 2 cut(s) 572, 707
MaeIII GTNAC 6 cut(s) 623, 691, 863, 909, 1102, 1136
MalI GATC 2 cut(s) 123, 884
MboI GATC 2 cut(s) 121, 882
MboII GAAGA 1 cut(s) 883
MflI RGATCY 1 cut(s) 882
MluCI AATT 8 cut(s) 160, 514, 685, 816, 946, 974, 1027, 1044
MlyI GAGTC 3 cut(s) 353, 742, 812
MmeI TCCRAC 1 cut(s) 881
MnlI CCTC 8 cut(s) 45, 312, 399, 408, 553, 649, 888, 1013
Mph1103I ATGCAT 1 cut(s) 424
MroXI GAANNNNTTC 1 cut(s) 514
MslI CAYNNNNRTG 1 cut(s) 423
NdeI CATATG 1 cut(s) 424
NdeII GATC 2 cut(s) 121, 882
NlaIII CATG 5 cut(s) 78, 266, 301, 422, 490
NlaIV GGNNCC 3 cut(s) 80, 128, 180
NmuCI GTSAC 1 cut(s) 691
NsiI ATGCAT 1 cut(s) 424
PdmI GAANNNNTTC 1 cut(s) 514
PfeI GAWTC 2 cut(s) 54, 490
PflMI CCANNNNNTGG 1 cut(s) 932
PkrI GCNGC 1 cut(s) 640
PleI GAGTC 3 cut(s) 352, 741, 811
PpsI GAGTC 3 cut(s) 352, 741, 811
PspN4I GGNNCC 3 cut(s) 80, 128, 180
PspPI GGNCC 1 cut(s) 178
PsuI RGATCY 1 cut(s) 882
RsaI GTAC 1 cut(s) 274
RsaNI GTAC 1 cut(s) 273
RseI CAYNNNNRTG 1 cut(s) 423
SatI GCNGC 1 cut(s) 639
Sau3AI GATC 2 cut(s) 121, 882
Sau96I GGNCC 1 cut(s) 178
SchI GAGTC 3 cut(s) 353, 742, 812
SfaNI GCATC 1 cut(s) 303
SfcI CTRYAG 1 cut(s) 192
SinI GGWCC 1 cut(s) 178
SmiMI CAYNNNNRTG 1 cut(s) 423
SmlI CTYRAG 4 cut(s) 38, 233, 349, 399
SmoI CTYRAG 4 cut(s) 38, 233, 349, 399
Sse9I AATT 8 cut(s) 160, 514, 685, 816, 946, 974, 1027, 1044
SsiI CCGC 2 cut(s) 603, 653
SspMI CTAG 4 cut(s) 119, 339, 813, 1076
StyI CCWWGG 1 cut(s) 174
TaaI ACNGT 2 cut(s) 589, 909
TaiI ACGT 2 cut(s) 575, 710
TaqI TCGA 1 cut(s) 28
TasI AATT 8 cut(s) 160, 514, 685, 816, 946, 974, 1027, 1044
TfiI GAWTC 2 cut(s) 54, 490
TscAI CASTG 4 cut(s) 51, 97, 256, 700
TseFI GTSAC 1 cut(s) 691
TseI GCWGC 1 cut(s) 638
Tsp45I GTSAC 1 cut(s) 691
TspDTI ATGAA 4 cut(s) 251, 492, 797, 1100
TspGWI ACGGA 1 cut(s) 71
TspRI CASTG 4 cut(s) 51, 97, 256, 700
Van91I CCANNNNNTGG 1 cut(s) 932
VpaK11BI GGWCC 1 cut(s) 178
XapI RAATTY 5 cut(s) 160, 816, 946, 974, 1027
XbaI TCTAGA 1 cut(s) 118
XcmI CCANNNNNNNNNTGG 1 cut(s) 864
XmiI GTMKAC 1 cut(s) 842
XmnI GAANNNNTTC 1 cut(s) 514
XspI CTAG 4 cut(s) 119, 339, 813, 1076
Zsp2I ATGCAT 1 cut(s) 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.