RLG00000032940

F-box kelch-repeat protein At3g06240-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
21209328 .. 21209936
609 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032940

Sequence Viewer

Length: 609 bp
ATGGAAAAGGGTTCAAGACTTGCCTTATATGTATTTAAAGAGAGATCCAGGGACGGAGCTATCCACTGGTTATGTCAGGACCCTGGAGGTCACCCTGTCATTGCTGCTTTTGATTTAGCAGAGGAGAAGTTCTCGATATTGTCCCCACCTGAATCTGTCAGAGATGATCGGGAATATAAAACTGGCGTTTTGAGAGGGTGTCTTTGTTTGCTCCAGAGGAATGAAGGTAATTGGCCATGCTCATTTTGGGTTATGGAAGAGTATGGTGTGAAGGAATCTTGGAAGAGGTTTTTAATAGGTACTGGTCGGAGAACAAGTTTGTCTTCTAGGCCACTATGTTACTGGAAGAATACCAAGGTATTACTCTTGAGAAATCAATTGGAAATACTTTTGGGCAACCCCAAGGATGGAAGTTGTAAAGGTTTCTTGAATTATGGCAGTCTTCGCATGGTTTTCGATTCTGATTTGTATGTGGAGAGCCTAGTCTCTCCAAATTTTCCGAAGAAGAAATGCTCGTGTAATCATGTTAAACCAAAGTTGCAGCACTGTACAAGATTTTCTTCTACTGCTAGTGCTTCACTTTTGAATTATTGTAACAAACTTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

203

Amino Acids

23.02

Weight (kDa)

9.18

Isoelectric Point (pI)

47.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 39
AcoI YGGCCR 1 cut(s) 233
AcsI RAATTY 1 cut(s) 493
AfaI GTAC 2 cut(s) 301, 550
AfiI CCNNNNNNNGG 1 cut(s) 407
AgsI TTSAA 3 cut(s) 15, 430, 586
AjnI CCWGG 2 cut(s) 47, 82
AluBI AGCT 1 cut(s) 59
AluI AGCT 1 cut(s) 59
Alw26I GTCTC 1 cut(s) 490
AlwI GGATC 1 cut(s) 39
AoxI GGCC 2 cut(s) 233, 329
ApeKI GCWGC 2 cut(s) 104, 541
ApoI RAATTY 1 cut(s) 493
AspS9I GGNCC 1 cut(s) 79
AsuHPI GGTGA 1 cut(s) 83
AvaII GGWCC 1 cut(s) 79
BalI TGGCCA 1 cut(s) 235
BauI CACGAG 1 cut(s) 514
BbsI GAAGAC 2 cut(s) 315, 434
BbvI GCAGC 2 cut(s) 91, 553
BccI CCATC 1 cut(s) 401
BcgI CGANNNNNNTGC 2 cut(s) 436, 470
BciT130I CCWGG 2 cut(s) 49, 84
BcoDI GTCTC 1 cut(s) 490
BfaI CTAG 3 cut(s) 327, 482, 570
BisI GCNGC 2 cut(s) 105, 542
BlsI GCNGC 2 cut(s) 106, 543
Bme1390I CCNGG 2 cut(s) 49, 84
Bme18I GGWCC 1 cut(s) 79
BmgT120I GGNCC 1 cut(s) 79
BmiI GGNNCC 1 cut(s) 81
BmrFI CCNGG 2 cut(s) 49, 84
BpiI GAAGAC 2 cut(s) 315, 434
BplI GAGNNNNNCTC 2 cut(s) 116, 148
BpmI CTGGAG 2 cut(s) 105, 197
BpuEI CTTGAG 1 cut(s) 388
BsaJI CCNNGG 4 cut(s) 48, 82, 354, 402
BsaXI ACNNNNNCTCC 2 cut(s) 301, 331
Bsc4I CCNNNNNNNGG 1 cut(s) 407
Bse1I ACTGG 4 cut(s) 71, 187, 307, 347
Bse3DI GCAATG 1 cut(s) 99
BseBI CCWGG 2 cut(s) 49, 84
BseDI CCNNGG 4 cut(s) 48, 82, 354, 402
BseGI GGATG 1 cut(s) 412
BseLI CCNNNNNNNGG 1 cut(s) 407
BseMI GCAATG 1 cut(s) 99
BseNI ACTGG 4 cut(s) 71, 187, 307, 347
BseRI GAGGAG 1 cut(s) 137
BseXI GCAGC 2 cut(s) 91, 553
BshFI GGCC 2 cut(s) 235, 331
BslFI GGGAC 2 cut(s) 65, 127
BslI CCNNNNNNNGG 1 cut(s) 407
BsmAI GTCTC 1 cut(s) 490
BsmFI GGGAC 2 cut(s) 65, 127
BsnI GGCC 2 cut(s) 235, 331
Bsp1407I TGTACA 1 cut(s) 548
Bsp143I GATC 2 cut(s) 44, 166
BspANI GGCC 2 cut(s) 235, 331
BspLI GGNNCC 1 cut(s) 81
BspPI GGATC 1 cut(s) 39
BsrDI GCAATG 1 cut(s) 99
BsrGI TGTACA 1 cut(s) 548
BsrI ACTGG 4 cut(s) 71, 187, 307, 347
BssECI CCNNGG 4 cut(s) 48, 82, 354, 402
BssMI GATC 2 cut(s) 44, 166
BssSI CACGAG 1 cut(s) 514
BssT1I CCWWGG 2 cut(s) 354, 402
Bst2BI CACGAG 1 cut(s) 514
Bst2UI CCWGG 2 cut(s) 49, 84
Bst4CI ACNGT 1 cut(s) 548
Bst6I CTCTTC 2 cut(s) 252, 278
BstAUI TGTACA 1 cut(s) 548
BstEII GGTNACC 1 cut(s) 89
BstF5I GGATG 1 cut(s) 412
BstKTI GATC 2 cut(s) 47, 169
BstMAI GTCTC 1 cut(s) 490
BstMBI GATC 2 cut(s) 44, 166
BstMWI GCNNNNNNNGC 1 cut(s) 444
BstNI CCWGG 2 cut(s) 49, 84
BstPI GGTNACC 1 cut(s) 89
BstSCI CCNGG 2 cut(s) 47, 82
BstV1I GCAGC 2 cut(s) 91, 553
BstV2I GAAGAC 2 cut(s) 315, 434
BstX2I RGATCY 1 cut(s) 44
BstYI RGATCY 1 cut(s) 44
BsuRI GGCC 2 cut(s) 235, 331
BtsCI GGATG 1 cut(s) 412
BtsIMutI CAGTG 2 cut(s) 64, 544
Cfr13I GGNCC 1 cut(s) 79
Csp6I GTAC 2 cut(s) 300, 549
CviAII CATG 3 cut(s) 237, 448, 524
CviJI RGCY 5 cut(s) 59, 235, 331, 480, 606
CviKI_1 RGCY 5 cut(s) 59, 235, 331, 480, 606
CviQI GTAC 2 cut(s) 300, 549
DpnI GATC 2 cut(s) 46, 168
DpnII GATC 2 cut(s) 44, 166
DraI TTTAAA 1 cut(s) 37
EaeI YGGCCR 1 cut(s) 233
Eam1104I CTCTTC 2 cut(s) 252, 278
EarI CTCTTC 2 cut(s) 252, 278
Eco130I CCWWGG 2 cut(s) 354, 402
Eco47I GGWCC 1 cut(s) 79
Eco91I GGTNACC 1 cut(s) 89
EcoO109I RGGNCCY 1 cut(s) 79
EcoO65I GGTNACC 1 cut(s) 89
EcoRII CCWGG 2 cut(s) 47, 82
EcoT14I CCWWGG 2 cut(s) 354, 402
ErhI CCWWGG 2 cut(s) 354, 402
FaeI CATG 3 cut(s) 240, 451, 527
FalI AAGNNNNNCTT 4 cut(s) 307, 339, 544, 576
FaqI GGGAC 2 cut(s) 65, 127
FatI CATG 3 cut(s) 236, 447, 523
Fnu4HI GCNGC 2 cut(s) 105, 542
FokI GGATG 1 cut(s) 419
Fsp4HI GCNGC 2 cut(s) 105, 542
FspBI CTAG 3 cut(s) 327, 482, 570
GluI GCNGC 2 cut(s) 105, 542
GsuI CTGGAG 2 cut(s) 105, 197
HaeIII GGCC 2 cut(s) 235, 331
Hin1II CATG 3 cut(s) 240, 451, 527
HinfI GANTC 3 cut(s) 152, 275, 458
HphI GGTGA 1 cut(s) 83
Hpy188I TCNGA 4 cut(s) 161, 309, 463, 501
Hpy188III TCNNGA 7 cut(s) 15, 77, 133, 170, 214, 367, 427
HpyAV CCTTC 2 cut(s) 218, 265
HpyCH4III ACNGT 1 cut(s) 548
HpyCH4V TGCA 1 cut(s) 541
HpyF10VI GCNNNNNNNGC 1 cut(s) 444
Hsp92II CATG 3 cut(s) 240, 451, 527
Kzo9I GATC 2 cut(s) 44, 166
LmnI GCTCC 2 cut(s) 56, 216
Lsp1109I GCAGC 2 cut(s) 91, 553
MaeI CTAG 3 cut(s) 327, 482, 570
MaeIII GTNAC 3 cut(s) 89, 338, 593
MalI GATC 2 cut(s) 46, 168
MboI GATC 2 cut(s) 44, 166
MboII GAAGA 8 cut(s) 269, 295, 315, 358, 434, 514, 517, 552
MfeI CAATTG 1 cut(s) 377
MflI RGATCY 1 cut(s) 44
MlsI TGGCCA 1 cut(s) 235
MluCI AATT 5 cut(s) 229, 377, 430, 493, 586
MluNI TGGCCA 1 cut(s) 235
MmeI TCCRAC 1 cut(s) 287
MnlI CCTC 5 cut(s) 80, 115, 188, 210, 279
Mox20I TGGCCA 1 cut(s) 235
MscI TGGCCA 1 cut(s) 235
MseI TTAA 3 cut(s) 36, 293, 528
Msp20I TGGCCA 1 cut(s) 235
MspR9I CCNGG 2 cut(s) 49, 84
MunI CAATTG 1 cut(s) 377
MvaI CCWGG 2 cut(s) 49, 84
MwoI GCNNNNNNNGC 1 cut(s) 444
NdeII GATC 2 cut(s) 44, 166
NlaIII CATG 3 cut(s) 240, 451, 527
NlaIV GGNNCC 1 cut(s) 81
NmuCI GTSAC 1 cut(s) 89
PfeI GAWTC 3 cut(s) 152, 275, 458
PkrI GCNGC 2 cut(s) 106, 543
PpuMI RGGWCCY 1 cut(s) 79
Psp5II RGGWCCY 1 cut(s) 79
Psp6I CCWGG 2 cut(s) 47, 82
PspEI GGTNACC 1 cut(s) 89
PspGI CCWGG 2 cut(s) 47, 82
PspN4I GGNNCC 1 cut(s) 81
PspPI GGNCC 1 cut(s) 79
PspPPI RGGWCCY 1 cut(s) 79
PsuI RGATCY 1 cut(s) 44
RsaI GTAC 2 cut(s) 301, 550
RsaNI GTAC 2 cut(s) 300, 549
SaqAI TTAA 3 cut(s) 36, 293, 528
SatI GCNGC 2 cut(s) 105, 542
Sau3AI GATC 2 cut(s) 44, 166
Sau96I GGNCC 1 cut(s) 79
ScrFI CCNGG 2 cut(s) 49, 84
SetI ASST 8 cut(s) 61, 91, 151, 229, 290, 301, 360, 424
SinI GGWCC 1 cut(s) 79
SmlI CTYRAG 1 cut(s) 367
SmoI CTYRAG 1 cut(s) 367
Sse9I AATT 5 cut(s) 229, 377, 430, 493, 586
SspMI CTAG 3 cut(s) 327, 482, 570
StyD4I CCNGG 2 cut(s) 47, 82
StyI CCWWGG 2 cut(s) 354, 402
TaaI ACNGT 1 cut(s) 548
TaqI TCGA 2 cut(s) 134, 456
TasI AATT 5 cut(s) 229, 377, 430, 493, 586
TatI WGTACW 1 cut(s) 548
TfiI GAWTC 3 cut(s) 152, 275, 458
Tru1I TTAA 3 cut(s) 36, 293, 528
Tru9I TTAA 3 cut(s) 36, 293, 528
TscAI CASTG 2 cut(s) 71, 551
TseFI GTSAC 1 cut(s) 89
TseI GCWGC 2 cut(s) 104, 541
Tsp45I GTSAC 1 cut(s) 89
TspDTI ATGAA 1 cut(s) 237
TspGWI ACGGA 1 cut(s) 69
TspRI CASTG 2 cut(s) 71, 551
VpaK11BI GGWCC 1 cut(s) 79
XapI RAATTY 1 cut(s) 493
XcmI CCANNNNNNNNNTGG 2 cut(s) 243, 339
XspI CTAG 3 cut(s) 327, 482, 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.