MD11G1202700.v1.1

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000111
Physical Location & Seq
Forward (+)
29421387 .. 29423382
1996 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1202700.v1.1.491

Sequence Viewer

Length: 1140 bp
ATGATGAAGGAAGAGAACCCTAACCTTCCATGGGAGATGATACGCGAGATTTTTTCATGGCTGCCAGTAAAATCATTAGGCCAATTCAGGTGTGTATCTAAGCCATGTCGTTCTTTCATCTCCGATCCCAACTTTGCTAAAATCCAGCTTAGCAGAACAATTGACAATAAGCACATTTTGTTCCAAAGACGGAGACTTGTTTTTACTAATGAAAAACGTCATTCCATGTACTTTTGTAACCTTGATGAGCTTCTCAATCAAGACAGTCGATTTCTGGATGATGGAGAAAGTATTAATGAGAATATTGGTAAAAGTGTTGTGGTTAGTAATCTGGATTATGTTCATCCTGAACAGTCCAGTCCTGATGGGTCGCCATTGCCGAATTTCTGGGTCTTGATTTCTTACTGCAATGGGTTAGTGTTGTTCAAGTTAAATGGACAAGAGTTATATCTGGTCAACCCAGCAATAAGGGAATATAAGAAACTGCCCAAGCCACCATCTTTTAACGCACTAAGTCTTTCTGGGTTCGGTTTTGATCATGCCAGTGATGATTACAAAGTGGTAAATGGGTGGTCCGTGAAAGATGAGATCGAGTTTGCTGTCTATTCATTGAAAACCGGTTTTTGGCGAGTGATTGAAAGGCGGTTTCCCTACAAAGCTATGTTCTGTTTTATTGGCTTCATGCTGAATGGAGGCGTGCATTGGTTGGTGAAGATAGCCCAAGATGACTCGTGGGTGATTATATCTTTCCTTTTAGAAGAGGAGGAGGTTCGAGAAATTCCAGTACCATTTACTTCTTATAAGCCACTACACTACAAACTGGGTGTCTTCGGGGAATTTCTGTGCATAGCAGATTGGGTTTCTTCTCATGTAGATGAACAATATACTGACTTTTGGGTTATGAAGGAATATGGAGTCAGGGAGTCTTGGACTGAAAAAAAGTTCTCCAGTTTCATCCCATTCTCGTTAGTACATTCAGGTTGCTGGAAGAAAGATTATGTTCTCTTGATTTGCCAGCACAAGAAGCTGCTGGTTATGTACGACTTTAGTGATGGAAGCTCGCATTGCATAAACATTTATGATTTCCCTAAAGTAAGTGATGCGGGTTTCTATGTGGAGAGCCTTGTTTCGCTAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

380

Amino Acids

44.23

Weight (kDa)

5.96

Isoelectric Point (pI)

44.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 8 - 45 5.7e-10 F-box domain
FBA_3 PF08268 131 - 360 1.4e-18 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 131 - 267 5.1e-08 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 801
AccII CGCG 1 cut(s) 45
AciI CCGC 2 cut(s) 643, 1103
AclWI GGATC 1 cut(s) 119
AcsI RAATTY 3 cut(s) 382, 777, 836
AfaI GTAC 4 cut(s) 230, 786, 972, 1040
AfiI CCNNNNNNNGG 2 cut(s) 31, 624
AgeI ACCGGT 1 cut(s) 617
AgsI TTSAA 3 cut(s) 427, 613, 638
AluBI AGCT 5 cut(s) 148, 250, 659, 1027, 1059
AluI AGCT 5 cut(s) 148, 250, 659, 1027, 1059
Alw26I GTCTC 1 cut(s) 187
AlwI GGATC 1 cut(s) 119
AoxI GGCC 1 cut(s) 79
ApeKI GCWGC 2 cut(s) 61, 1027
ApoI RAATTY 3 cut(s) 382, 777, 836
ArsI GACNNNNNNTTYG 2 cut(s) 810, 842
AseI ATTAAT 1 cut(s) 294
AsiGI ACCGGT 1 cut(s) 617
AspS9I GGNCC 1 cut(s) 573
AsuHPI GGTGA 2 cut(s) 721, 748
AvaII GGWCC 1 cut(s) 573
BauI CACGAG 1 cut(s) 730
BbsI GAAGAC 1 cut(s) 820
BbvI GCAGC 2 cut(s) 48, 1014
BccI CCATC 4 cut(s) 275, 359, 505, 1046
BclI TGATCA 1 cut(s) 535
BcoDI GTCTC 1 cut(s) 187
BisI GCNGC 2 cut(s) 62, 1028
BlpI GCTNAGC 1 cut(s) 149
BlsI GCNGC 2 cut(s) 63, 1029
Bme18I GGWCC 1 cut(s) 573
BmgT120I GGNCC 1 cut(s) 573
BmrI ACTGGG 1 cut(s) 830
BmsI GCATC 1 cut(s) 1090
BmuI ACTGGG 1 cut(s) 830
BpiI GAAGAC 1 cut(s) 820
BpmI CTGGAG 1 cut(s) 931
Bpu1102I GCTNAGC 1 cut(s) 149
BsaJI CCNNGG 1 cut(s) 29
BsaWI WCCGGW 1 cut(s) 617
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 624
Bse118I RCCGGY 1 cut(s) 617
Bse1I ACTGG 6 cut(s) 65, 357, 543, 782, 825, 948
Bse3DI GCAATG 3 cut(s) 374, 415, 1063
BseDI CCNNGG 1 cut(s) 29
BseGI GGATG 3 cut(s) 283, 343, 954
BseLI CCNNNNNNNGG 2 cut(s) 31, 624
BseMI GCAATG 3 cut(s) 374, 415, 1063
BseNI ACTGG 6 cut(s) 65, 357, 543, 782, 825, 948
BseRI GAGGAG 2 cut(s) 776, 779
BseXI GCAGC 2 cut(s) 48, 1014
BseYI CCCAGC 1 cut(s) 460
Bsh1236I CGCG 1 cut(s) 45
BshFI GGCC 1 cut(s) 81
BshTI ACCGGT 1 cut(s) 617
BsiSI CCGG 1 cut(s) 618
BslI CCNNNNNNNGG 2 cut(s) 31, 624
BsmAI GTCTC 1 cut(s) 187
BsnI GGCC 1 cut(s) 81
Bsp143I GATC 3 cut(s) 124, 535, 588
Bsp1720I GCTNAGC 1 cut(s) 149
Bsp19I CCATGG 1 cut(s) 29
BspACI CCGC 2 cut(s) 643, 1103
BspANI GGCC 1 cut(s) 81
BspFNI CGCG 1 cut(s) 45
BspPI GGATC 1 cut(s) 119
BsrDI GCAATG 3 cut(s) 374, 415, 1063
BsrFI RCCGGY 1 cut(s) 617
BsrI ACTGG 6 cut(s) 65, 357, 543, 782, 825, 948
BssAI RCCGGY 1 cut(s) 617
BssECI CCNNGG 1 cut(s) 29
BssMI GATC 3 cut(s) 124, 535, 588
BssSI CACGAG 1 cut(s) 730
BssT1I CCWWGG 1 cut(s) 29
Bst2BI CACGAG 1 cut(s) 730
Bst4CI ACNGT 2 cut(s) 266, 354
Bst6I CTCTTC 2 cut(s) 6, 753
BstC8I GCNNGC 3 cut(s) 698, 1016, 1061
BstDEI CTNAG 3 cut(s) 99, 149, 512
BstDSI CCRYGG 1 cut(s) 29
BstF5I GGATG 3 cut(s) 283, 343, 954
BstFNI CGCG 1 cut(s) 45
BstKTI GATC 3 cut(s) 127, 538, 591
BstMAI GTCTC 1 cut(s) 187
BstMBI GATC 3 cut(s) 124, 535, 588
BstMWI GCNNNNNNNGC 2 cut(s) 1024, 1065
BstUI CGCG 1 cut(s) 45
BstV1I GCAGC 2 cut(s) 48, 1014
BstV2I GAAGAC 1 cut(s) 820
BsuRI GGCC 1 cut(s) 81
BtgI CCRYGG 1 cut(s) 29
BtsCI GGATG 3 cut(s) 283, 343, 954
BtsIMutI CAGTG 1 cut(s) 550
Cac8I GCNNGC 3 cut(s) 698, 1016, 1061
Cfr10I RCCGGY 1 cut(s) 617
Cfr13I GGNCC 1 cut(s) 573
Csp6I GTAC 4 cut(s) 229, 785, 971, 1039
CspAI ACCGGT 1 cut(s) 617
CviAII CATG 7 cut(s) 30, 57, 105, 226, 539, 682, 869
CviQI GTAC 4 cut(s) 229, 785, 971, 1039
DdeI CTNAG 3 cut(s) 99, 149, 512
DpnI GATC 3 cut(s) 126, 537, 590
DpnII GATC 3 cut(s) 124, 535, 588
Eam1104I CTCTTC 2 cut(s) 6, 753
EarI CTCTTC 2 cut(s) 6, 753
Eco130I CCWWGG 1 cut(s) 29
Eco47I GGWCC 1 cut(s) 573
EcoT14I CCWWGG 1 cut(s) 29
ErhI CCWWGG 1 cut(s) 29
FaeI CATG 7 cut(s) 33, 60, 108, 229, 542, 685, 872
FatI CATG 7 cut(s) 29, 56, 104, 225, 538, 681, 868
FauI CCCGC 1 cut(s) 1096
FbaI TGATCA 1 cut(s) 535
Fnu4HI GCNGC 2 cut(s) 62, 1028
FokI GGATG 3 cut(s) 290, 330, 941
Fsp4HI GCNGC 2 cut(s) 62, 1028
GluI GCNGC 2 cut(s) 62, 1028
GsaI CCCAGC 1 cut(s) 464
GsuI CTGGAG 1 cut(s) 931
HaeIII GGCC 1 cut(s) 81
HapII CCGG 1 cut(s) 618
Hin1II CATG 7 cut(s) 33, 60, 108, 229, 542, 685, 872
HincII GTYRAC 1 cut(s) 457
HindII GTYRAC 1 cut(s) 457
HinfI GANTC 3 cut(s) 728, 915, 923
HpaII CCGG 1 cut(s) 618
HphI GGTGA 2 cut(s) 721, 748
Hpy166II GTNNAC 1 cut(s) 457
Hpy188I TCNGA 1 cut(s) 124
Hpy188III TCNNGA 8 cut(s) 260, 275, 332, 347, 362, 394, 773, 1006
Hpy8I GTNNAC 1 cut(s) 457
HpyAV CCTTC 2 cut(s) 35, 898
HpyCH4III ACNGT 2 cut(s) 266, 354
HpyCH4IV ACGT 1 cut(s) 217
HpyCH4V TGCA 4 cut(s) 408, 700, 846, 1068
HpyF10VI GCNNNNNNNGC 2 cut(s) 1024, 1065
HpyF3I CTNAG 3 cut(s) 99, 149, 512
HpySE526I ACGT 1 cut(s) 217
Hsp92II CATG 7 cut(s) 33, 60, 108, 229, 542, 685, 872
Ksp22I TGATCA 1 cut(s) 535
Kzo9I GATC 3 cut(s) 124, 535, 588
Lsp1109I GCAGC 2 cut(s) 48, 1014
LweI GCATC 1 cut(s) 1090
MaeII ACGT 1 cut(s) 217
MaeIII GTNAC 1 cut(s) 236
MalI GATC 3 cut(s) 126, 537, 590
MboI GATC 3 cut(s) 124, 535, 588
MboII GAAGA 6 cut(s) 23, 724, 770, 820, 855, 1000
MfeI CAATTG 1 cut(s) 159
MluCI AATT 5 cut(s) 83, 159, 382, 777, 836
MlyI GAGTC 3 cut(s) 722, 924, 932
MnlI CCTC 4 cut(s) 686, 754, 757, 760
MseI TTAA 3 cut(s) 294, 431, 504
MslI CAYNNNNRTG 2 cut(s) 543, 873
MspI CCGG 1 cut(s) 618
MunI CAATTG 1 cut(s) 159
MvnI CGCG 1 cut(s) 45
MwoI GCNNNNNNNGC 2 cut(s) 1024, 1065
NcoI CCATGG 1 cut(s) 29
NdeII GATC 3 cut(s) 124, 535, 588
NlaIII CATG 7 cut(s) 33, 60, 108, 229, 542, 685, 872
PcsI WCGNNNNNNNCGW 1 cut(s) 377
PinAI ACCGGT 1 cut(s) 617
PkrI GCNGC 2 cut(s) 63, 1029
PleI GAGTC 3 cut(s) 722, 923, 931
PpsI GAGTC 3 cut(s) 722, 923, 931
PshBI ATTAAT 1 cut(s) 294
PsiI TTATAA 1 cut(s) 801
PspFI CCCAGC 1 cut(s) 460
PspPI GGNCC 1 cut(s) 573
RsaI GTAC 4 cut(s) 230, 786, 972, 1040
RsaNI GTAC 4 cut(s) 229, 785, 971, 1039
RseI CAYNNNNRTG 2 cut(s) 543, 873
SaqAI TTAA 3 cut(s) 294, 431, 504
SatI GCNGC 2 cut(s) 62, 1028
Sau3AI GATC 3 cut(s) 124, 535, 588
Sau96I GGNCC 1 cut(s) 573
SchI GAGTC 3 cut(s) 722, 924, 932
SfaNI GCATC 1 cut(s) 1090
SinI GGWCC 1 cut(s) 573
SmiMI CAYNNNNRTG 2 cut(s) 543, 873
Sse9I AATT 5 cut(s) 83, 159, 382, 777, 836
SsiI CCGC 2 cut(s) 643, 1103
SspI AATATT 1 cut(s) 304
StyI CCWWGG 1 cut(s) 29
TaaI ACNGT 2 cut(s) 266, 354
TaiI ACGT 1 cut(s) 220
TaqI TCGA 3 cut(s) 268, 591, 772
TasI AATT 5 cut(s) 83, 159, 382, 777, 836
TatI WGTACW 2 cut(s) 228, 970
Tru1I TTAA 3 cut(s) 294, 431, 504
Tru9I TTAA 3 cut(s) 294, 431, 504
TscAI CASTG 1 cut(s) 550
TseI GCWGC 2 cut(s) 61, 1027
TspGWI ACGGA 2 cut(s) 205, 565
TspRI CASTG 1 cut(s) 550
VpaK11BI GGWCC 1 cut(s) 573
VspI ATTAAT 1 cut(s) 294
XapI RAATTY 3 cut(s) 382, 777, 836
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.