FvH4_3g15810

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000111
Physical Location & Seq
Reverse (-)
9949182 .. 9951615
2434 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g15810.t1

Sequence Viewer

Length: 1032 bp
ATGTCTAAAATTTCACATGATACCATCATAGACATACTCTCTCGACTTCCTGCCAAGTCTATCTGTCGATTTAGGTGTGTGTCAAAGACATGGCTCCTTCTTACCCATGAACCCCACTTCATTGCAACCCACCTCAGCAGACACCAGAAGCAAAAACTTATTCTCAGTTCCAATAAGGCTCTCTTCTCCTTGGACCAAGAAGCACCTATAGATGATGATATGTTACCCTCTGTGCTTGATTTTCCTCTGAAGGGCGATCTCAACAATCAGTGGATTCAAATGCTTGGTTCTTGTAATGGTTTGGTCTGCATTATGCCTCAACCAGAAGCATTCTTTGTGTTTAATCCTTCAACTCGGGAGTCCATGAGAGTACCCGATTGCCCCATGTCAAGCCATGCTGATCCCTGTGCTGAAGTGGGTTATGATGTACATGGTTTTGGTTATGCTCCTTCTGTCAAGGATTACATGTTAGTTAAAATTCATAAGGGCTGCAGTGTGCTCATCTTTTCACTGAAAAACAATTCATGGAAAACTGTTCAGGACTTTCCTTACAAACATCTTTTGAAAAATCCAGGGACTACTCTCAATGGAGCTGTCCACTGGTTGTGCATGGGCCCTGATCATCTCCCTGTAATTGCTGCTTTAGATTTAGCAGGGCAGAAGTTCTCAGGGTTGTCCCCACCTGAATCTGTTATAGATTCTAATGGCTATACAACTGGTGTCTTAAGGGACTGTCTTTGTTTGCTACACCACAATGATCATGACAGGCAGCGTGTATTTTGGATTATGAAAGAGTATGGTGTGAAGGAGTCATGGACCAGGATTTTGATTGCCGAGCCATTCTTTTCTTTGCAGCCATTATGTTACTGGAAGAATACCAAGATTTTGGTGGCAAGAAATCGGAGGGAAATGCTTCTGTTCAATCCGAGGGACGGAACTTGTAAATGTTTATTGGCAAATGGCCTCCAGGTTCCATTCTATGTGGATGTGTATGTGGAGAGTCTTGTTTCTCCAAACTTTCGGCTGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

344

Amino Acids

38.96

Weight (kDa)

8.18

Isoelectric Point (pI)

41.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 2 - 34 5e-07 F-box domain
FBA_3 PF08268 66 - 281 8.9e-12 F-box associated beta propeller domain
FBA_1 PF07734 83 - 308 4.4e-18 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 395
AcsI RAATTY 2 cut(s) 9, 477
AcuI CTGAAG 2 cut(s) 269, 432
AfaI GTAC 2 cut(s) 372, 429
AfiI CCNNNNNNNGG 2 cut(s) 251, 932
AflII CTTAAG 1 cut(s) 724
AflIII ACRYGT 1 cut(s) 465
AgsI TTSAA 4 cut(s) 278, 351, 565, 922
AjnI CCWGG 3 cut(s) 571, 818, 966
AluBI AGCT 1 cut(s) 593
AluI AGCT 1 cut(s) 593
Alw21I GWGCWC 1 cut(s) 501
AlwI GGATC 1 cut(s) 395
Ama87I CYCGRG 1 cut(s) 354
AoxI GGCC 2 cut(s) 613, 961
ApaI GGGCCC 1 cut(s) 617
ApeKI GCWGC 4 cut(s) 489, 638, 769, 853
ApoI RAATTY 2 cut(s) 9, 477
ArsI GACNNNNNNTTYG 2 cut(s) 808, 840
Asp700I GAANNNNTTC 1 cut(s) 912
AspS9I GGNCC 4 cut(s) 193, 613, 614, 816
AvaI CYCGRG 1 cut(s) 354
AvaII GGWCC 2 cut(s) 193, 816
BaeGI GKGCMC 1 cut(s) 617
BanII GRGCYC 1 cut(s) 617
Bbv12I GWGCWC 1 cut(s) 501
BbvCI CCTCAGC 1 cut(s) 134
BbvI GCAGC 4 cut(s) 476, 625, 781, 865
BccI CCATC 1 cut(s) 32
BciT130I CCWGG 3 cut(s) 573, 820, 968
BclI TGATCA 2 cut(s) 619, 757
BfmI CTRYAG 2 cut(s) 207, 490
BfrI CTTAAG 1 cut(s) 724
BisI GCNGC 4 cut(s) 490, 639, 770, 854
BlsI GCNGC 4 cut(s) 491, 640, 771, 855
Bme1390I CCNGG 3 cut(s) 573, 820, 968
Bme18I GGWCC 2 cut(s) 193, 816
BmeT110I CYCGRG 1 cut(s) 354
BmgT120I GGNCC 4 cut(s) 193, 613, 614, 816
BmiI GGNNCC 3 cut(s) 95, 615, 972
BmrFI CCNGG 3 cut(s) 573, 820, 968
BpmI CTGGAG 1 cut(s) 950
Bpu10I CCTNAGC 1 cut(s) 134
BsaJI CCNNGG 3 cut(s) 189, 572, 926
Bsc4I CCNNNNNNNGG 2 cut(s) 251, 932
Bse1I ACTGG 3 cut(s) 605, 721, 872
Bse3DI GCAATG 1 cut(s) 120
BseBI CCWGG 3 cut(s) 573, 820, 968
BseDI CCNNGG 3 cut(s) 189, 572, 926
BseGI GGATG 1 cut(s) 991
BseLI CCNNNNNNNGG 2 cut(s) 251, 932
BseMI GCAATG 1 cut(s) 120
BseMII CTCAG 3 cut(s) 148, 178, 681
BseNI ACTGG 3 cut(s) 605, 721, 872
BseSI GKGCMC 1 cut(s) 617
BseXI GCAGC 4 cut(s) 476, 625, 781, 865
BshFI GGCC 2 cut(s) 615, 963
BsiHKAI GWGCWC 1 cut(s) 501
BsiHKCI CYCGRG 1 cut(s) 354
BslFI GGGAC 4 cut(s) 589, 661, 743, 944
BslI CCNNNNNNNGG 2 cut(s) 251, 932
BsmFI GGGAC 4 cut(s) 589, 661, 743, 944
BsmI GAATGC 1 cut(s) 329
BsnI GGCC 2 cut(s) 615, 963
BsoBI CYCGRG 1 cut(s) 354
Bsp120I GGGCCC 1 cut(s) 613
Bsp1286I GDGCHC 2 cut(s) 501, 617
Bsp1407I TGTACA 1 cut(s) 427
Bsp143I GATC 4 cut(s) 256, 400, 619, 757
BspANI GGCC 2 cut(s) 615, 963
BspCNI CTCAG 3 cut(s) 147, 177, 680
BspHI TCATGA 1 cut(s) 760
BspLI GGNNCC 3 cut(s) 95, 615, 972
BspMAI CTGCAG 1 cut(s) 494
BspPI GGATC 1 cut(s) 395
BspTI CTTAAG 1 cut(s) 724
BsrDI GCAATG 1 cut(s) 120
BsrGI TGTACA 1 cut(s) 427
BsrI ACTGG 3 cut(s) 605, 721, 872
BssECI CCNNGG 3 cut(s) 189, 572, 926
BssMI GATC 4 cut(s) 256, 400, 619, 757
BssT1I CCWWGG 1 cut(s) 189
Bst2UI CCWGG 3 cut(s) 573, 820, 968
Bst4CI ACNGT 2 cut(s) 535, 734
Bst6I CTCTTC 1 cut(s) 188
BstAFI CTTAAG 1 cut(s) 724
BstAUI TGTACA 1 cut(s) 427
BstDEI CTNAG 3 cut(s) 134, 164, 667
BstF5I GGATG 1 cut(s) 991
BstKTI GATC 4 cut(s) 259, 403, 622, 760
BstMBI GATC 4 cut(s) 256, 400, 619, 757
BstNI CCWGG 3 cut(s) 573, 820, 968
BstNSI RCATGY 1 cut(s) 469
BstSCI CCNGG 3 cut(s) 571, 818, 966
BstSFI CTRYAG 2 cut(s) 207, 490
BstSLI GKGCMC 1 cut(s) 617
BstV1I GCAGC 4 cut(s) 476, 625, 781, 865
BstXI CCANNNNNNTGG 1 cut(s) 886
BsuRI GGCC 2 cut(s) 615, 963
BtsCI GGATG 1 cut(s) 991
BtsI GCAGTG 1 cut(s) 499
BtsIMutI CAGTG 4 cut(s) 275, 499, 509, 598
CciI TCATGA 1 cut(s) 760
Cfr13I GGNCC 4 cut(s) 193, 613, 614, 816
Csp6I GTAC 2 cut(s) 371, 428
CviQI GTAC 2 cut(s) 371, 428
DdeI CTNAG 3 cut(s) 134, 164, 667
DpnI GATC 4 cut(s) 258, 402, 621, 759
DpnII GATC 4 cut(s) 256, 400, 619, 757
Eam1104I CTCTTC 1 cut(s) 188
EarI CTCTTC 1 cut(s) 188
Eco130I CCWWGG 1 cut(s) 189
Eco24I GRGCYC 1 cut(s) 617
Eco47I GGWCC 2 cut(s) 193, 816
Eco57I CTGAAG 2 cut(s) 269, 432
Eco88I CYCGRG 1 cut(s) 354
EcoO109I RGGNCCY 1 cut(s) 614
EcoRII CCWGG 3 cut(s) 571, 818, 966
EcoT14I CCWWGG 1 cut(s) 189
EcoT38I GRGCYC 1 cut(s) 617
ErhI CCWWGG 1 cut(s) 189
FalI AAGNNNNNCTT 2 cut(s) 167, 199
FaqI GGGAC 4 cut(s) 589, 661, 743, 944
FbaI TGATCA 2 cut(s) 619, 757
Fnu4HI GCNGC 4 cut(s) 490, 639, 770, 854
FokI GGATG 1 cut(s) 998
FriOI GRGCYC 1 cut(s) 617
Fsp4HI GCNGC 4 cut(s) 490, 639, 770, 854
GluI GCNGC 4 cut(s) 490, 639, 770, 854
GsuI CTGGAG 1 cut(s) 950
HaeIII GGCC 2 cut(s) 615, 963
HinfI GANTC 6 cut(s) 274, 359, 686, 698, 809, 1000
Hpy166II GTNNAC 1 cut(s) 598
Hpy188I TCNGA 3 cut(s) 249, 903, 927
Hpy188III TCNNGA 4 cut(s) 42, 356, 539, 761
Hpy8I GTNNAC 1 cut(s) 598
HpyAV CCTTC 5 cut(s) 107, 244, 357, 459, 799
HpyCH4III ACNGT 2 cut(s) 535, 734
HpyCH4V TGCA 5 cut(s) 125, 309, 492, 609, 853
HpyF3I CTNAG 3 cut(s) 134, 164, 667
Ksp22I TGATCA 2 cut(s) 619, 757
Kzo9I GATC 4 cut(s) 256, 400, 619, 757
LmnI GCTCC 3 cut(s) 99, 451, 590
Lsp1109I GCAGC 4 cut(s) 476, 625, 781, 865
MaeIII GTNAC 2 cut(s) 222, 863
MalI GATC 4 cut(s) 258, 402, 621, 759
MboI GATC 4 cut(s) 256, 400, 619, 757
MboII GAAGA 2 cut(s) 175, 883
MhlI GDGCHC 2 cut(s) 501, 617
MluCI AATT 4 cut(s) 9, 477, 520, 633
MlyI GAGTC 3 cut(s) 368, 818, 1009
MnlI CCTC 7 cut(s) 143, 238, 255, 327, 897, 921, 974
MroXI GAANNNNTTC 1 cut(s) 912
MseI TTAA 3 cut(s) 342, 474, 725
MslI CAYNNNNRTG 1 cut(s) 753
MspCI CTTAAG 1 cut(s) 724
MspR9I CCNGG 3 cut(s) 573, 820, 968
Mva1269I GAATGC 1 cut(s) 329
MvaI CCWGG 3 cut(s) 573, 820, 968
NdeII GATC 4 cut(s) 256, 400, 619, 757
NlaIV GGNNCC 3 cut(s) 95, 615, 972
NmeAIII GCCGAG 1 cut(s) 859
NspI RCATGY 1 cut(s) 469
PagI TCATGA 1 cut(s) 760
PciI ACATGT 1 cut(s) 465
PctI GAATGC 1 cut(s) 329
PdmI GAANNNNTTC 1 cut(s) 912
PfeI GAWTC 3 cut(s) 274, 686, 698
PkrI GCNGC 4 cut(s) 491, 640, 771, 855
PleI GAGTC 3 cut(s) 367, 817, 1008
PpsI GAGTC 3 cut(s) 367, 817, 1008
PscI ACATGT 1 cut(s) 465
Psp6I CCWGG 3 cut(s) 571, 818, 966
PspGI CCWGG 3 cut(s) 571, 818, 966
PspN4I GGNNCC 3 cut(s) 95, 615, 972
PspOMI GGGCCC 1 cut(s) 613
PspPI GGNCC 4 cut(s) 193, 613, 614, 816
PstI CTGCAG 1 cut(s) 494
RsaI GTAC 2 cut(s) 372, 429
RsaNI GTAC 2 cut(s) 371, 428
RseI CAYNNNNRTG 1 cut(s) 753
SaqAI TTAA 3 cut(s) 342, 474, 725
SatI GCNGC 4 cut(s) 490, 639, 770, 854
Sau3AI GATC 4 cut(s) 256, 400, 619, 757
Sau96I GGNCC 4 cut(s) 193, 613, 614, 816
SchI GAGTC 3 cut(s) 368, 818, 1009
ScrFI CCNGG 3 cut(s) 573, 820, 968
SduI GDGCHC 2 cut(s) 501, 617
SetI ASST 6 cut(s) 77, 135, 208, 595, 685, 972
SfcI CTRYAG 2 cut(s) 207, 490
SinI GGWCC 2 cut(s) 193, 816
SmiMI CAYNNNNRTG 1 cut(s) 753
SmlI CTYRAG 1 cut(s) 724
SmoI CTYRAG 1 cut(s) 724
Sse9I AATT 4 cut(s) 9, 477, 520, 633
StyD4I CCNGG 3 cut(s) 571, 818, 966
StyI CCWWGG 1 cut(s) 189
TaaI ACNGT 2 cut(s) 535, 734
TaqI TCGA 2 cut(s) 43, 67
TasI AATT 4 cut(s) 9, 477, 520, 633
TatI WGTACW 1 cut(s) 427
TfiI GAWTC 3 cut(s) 274, 686, 698
Tru1I TTAA 3 cut(s) 342, 474, 725
Tru9I TTAA 3 cut(s) 342, 474, 725
TscAI CASTG 4 cut(s) 275, 499, 516, 605
TseI GCWGC 4 cut(s) 489, 638, 769, 853
TspDTI ATGAA 5 cut(s) 109, 123, 470, 513, 803
TspGWI ACGGA 1 cut(s) 948
TspRI CASTG 4 cut(s) 275, 499, 516, 605
Vha464I CTTAAG 1 cut(s) 724
VpaK11BI GGWCC 2 cut(s) 193, 816
XapI RAATTY 2 cut(s) 9, 477
XceI RCATGY 1 cut(s) 469
XcmI CCANNNNNNNNNTGG 2 cut(s) 864, 886
XmnI GAANNNNTTC 1 cut(s) 912
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.