Rorug02G0012600

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000111
Physical Location & Seq
Forward (+)
1087932 .. 1090654
2723 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0012600.1

Sequence Viewer

Length: 600 bp
ATGAAGATCACGGCGTTGCTGGTCCTCAAGTGCAACCCGGAAGGATCCGACCCGGTCATATTGGCCAACGCCTCCGATACCTCCCATTTCGGCTACTTCCAGAGGTCCAGCGTCAAGGAGTTCATCGTCTTCGTCGGCCGCACCGTCGCCAAACGCACCCCTCCCGGTCAACGTCAGTCCGTCAAGCACGAAGAGTATAAAGTACATGCTTACAGCAGCAATGGACTCTGTGCATTGGGCTTTATGGATGATCACTATCCGGTTAGAAGTGCGTTTTCGCTGCTGAACCAGGTGTTAGATGAATATCAGAAAAAATTTGGTGATTCTTGGAGGACTGCACAACAGGACAGCACAGAATCATGGCCCTACCTAAATGAGGCTCTAACAAGATTCCAGGACCCTGCAGAAGCTGATAAGTTGTTGAAAATTCAGAGGGAATTGGACGAAACAAAGATTATTCTTCATAAGACTATTGATAGTGTGCTTGAACGAGGTGAGAAACTGGACAGTTTGGTTGAGAAGAGTTCGGATCTTAGCACGGCATCACAGATGTTCTATAAGCAGGCAAAAAAGACCAATTCTTGTTGTACCATACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

199

Amino Acids

22.58

Weight (kDa)

6.96

Isoelectric Point (pI)

40.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Longin PF13774 47 - 112 2.2e-15 Regulated-SNARE-like domain
Synaptobrevin PF00957 140 - 193 2.1e-14 Synaptobrevin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 139
AclWI GGATC 3 cut(s) 39, 52, 537
AcoI YGGCCR 2 cut(s) 63, 136
AcsI RAATTY 2 cut(s) 314, 426
AfaI GTAC 2 cut(s) 204, 589
AfiI CCNNNNNNNGG 1 cut(s) 376
AgsI TTSAA 2 cut(s) 424, 488
AjnI CCWGG 2 cut(s) 288, 393
AluBI AGCT 1 cut(s) 410
AluI AGCT 1 cut(s) 410
AlwI GGATC 3 cut(s) 39, 52, 537
AlwNI CAGNNNCTG 1 cut(s) 410
AoxI GGCC 3 cut(s) 63, 136, 362
ApeKI GCWGC 2 cut(s) 216, 280
ApoI RAATTY 2 cut(s) 314, 426
AspS9I GGNCC 4 cut(s) 22, 105, 363, 397
AsuC2I CCSGG 3 cut(s) 38, 53, 165
AsuHPI GGTGA 2 cut(s) 332, 506
AvaII GGWCC 3 cut(s) 22, 105, 397
BalI TGGCCA 1 cut(s) 65
BamHI GGATCC 1 cut(s) 44
BbsI GAAGAC 1 cut(s) 121
BbvI GCAGC 2 cut(s) 228, 267
BceAI ACGGC 2 cut(s) 27, 555
BciT130I CCWGG 2 cut(s) 290, 395
BclI TGATCA 1 cut(s) 250
BcnI CCSGG 3 cut(s) 38, 53, 165
BfmI CTRYAG 1 cut(s) 402
BisI GCNGC 3 cut(s) 139, 217, 281
BlsI GCNGC 3 cut(s) 140, 218, 282
Bme1390I CCNGG 5 cut(s) 38, 53, 165, 290, 395
Bme18I GGWCC 3 cut(s) 22, 105, 397
BmgT120I GGNCC 4 cut(s) 22, 105, 363, 397
BmiI GGNNCC 2 cut(s) 46, 399
BmrFI CCNGG 5 cut(s) 38, 53, 165, 290, 395
BmsI GCATC 1 cut(s) 551
BpiI GAAGAC 1 cut(s) 121
BpuEI CTTGAG 1 cut(s) 11
BpuMI CCSGG 3 cut(s) 38, 53, 165
BsaBI GATNNNNATC 2 cut(s) 255, 303
BsaWI WCCGGW 1 cut(s) 259
Bsc4I CCNNNNNNNGG 1 cut(s) 376
Bse1I ACTGG 1 cut(s) 507
Bse3DI GCAATG 1 cut(s) 226
Bse8I GATNNNNATC 2 cut(s) 255, 303
BseBI CCWGG 2 cut(s) 290, 395
BseGI GGATG 1 cut(s) 253
BseJI GATNNNNATC 2 cut(s) 255, 303
BseLI CCNNNNNNNGG 1 cut(s) 376
BseMI GCAATG 1 cut(s) 226
BseNI ACTGG 1 cut(s) 507
BseX3I CGGCCG 1 cut(s) 136
BseXI GCAGC 2 cut(s) 228, 267
BsgI GTGCAG 1 cut(s) 321
Bsh1285I CGRYCG 1 cut(s) 139
BshFI GGCC 3 cut(s) 65, 138, 364
BsiEI CGRYCG 1 cut(s) 139
BsiSI CCGG 4 cut(s) 38, 53, 165, 260
BslI CCNNNNNNNGG 1 cut(s) 376
BsnI GGCC 3 cut(s) 65, 138, 364
Bsp143I GATC 4 cut(s) 6, 44, 250, 529
BspACI CCGC 1 cut(s) 139
BspANI GGCC 3 cut(s) 65, 138, 364
BspLI GGNNCC 2 cut(s) 46, 399
BspMAI CTGCAG 1 cut(s) 406
BspPI GGATC 3 cut(s) 39, 52, 537
BsrDI GCAATG 1 cut(s) 226
BsrI ACTGG 1 cut(s) 507
BssMI GATC 4 cut(s) 6, 44, 250, 529
Bst2UI CCWGG 2 cut(s) 290, 395
Bst4CI ACNGT 3 cut(s) 145, 509, 597
Bst6I CTCTTC 2 cut(s) 186, 515
BstC8I GCNNGC 1 cut(s) 564
BstDEI CTNAG 1 cut(s) 533
BstENI CCTNNNNNAGG 1 cut(s) 374
BstF5I GGATG 1 cut(s) 253
BstKTI GATC 4 cut(s) 9, 47, 253, 532
BstMBI GATC 4 cut(s) 6, 44, 250, 529
BstMCI CGRYCG 1 cut(s) 139
BstNI CCWGG 2 cut(s) 290, 395
BstNSI RCATGY 1 cut(s) 209
BstSCI CCNGG 5 cut(s) 36, 51, 163, 288, 393
BstSFI CTRYAG 1 cut(s) 402
BstV1I GCAGC 2 cut(s) 228, 267
BstV2I GAAGAC 1 cut(s) 121
BstX2I RGATCY 2 cut(s) 44, 529
BstYI RGATCY 2 cut(s) 44, 529
BstZI CGGCCG 1 cut(s) 136
BsuRI GGCC 3 cut(s) 65, 138, 364
BtsCI GGATG 1 cut(s) 253
Cac8I GCNNGC 1 cut(s) 564
CaiI CAGNNNCTG 1 cut(s) 410
Cfr13I GGNCC 4 cut(s) 22, 105, 363, 397
CseI GACGC 1 cut(s) 100
CsiI ACCWGGT 1 cut(s) 288
Csp6I GTAC 2 cut(s) 203, 588
CviAII CATG 2 cut(s) 206, 360
CviJI RGCY 7 cut(s) 65, 93, 138, 240, 364, 380, 410
CviKI_1 RGCY 7 cut(s) 65, 93, 138, 240, 364, 380, 410
CviQI GTAC 2 cut(s) 203, 588
DdeI CTNAG 1 cut(s) 533
DpnI GATC 4 cut(s) 8, 46, 252, 531
DpnII GATC 4 cut(s) 6, 44, 250, 529
EaeI YGGCCR 2 cut(s) 63, 136
EagI CGGCCG 1 cut(s) 136
Eam1104I CTCTTC 2 cut(s) 186, 515
EarI CTCTTC 2 cut(s) 186, 515
EclXI CGGCCG 1 cut(s) 136
Eco47I GGWCC 3 cut(s) 22, 105, 397
Eco52I CGGCCG 1 cut(s) 136
EcoNI CCTNNNNNAGG 1 cut(s) 374
EcoO109I RGGNCCY 1 cut(s) 397
EcoRII CCWGG 2 cut(s) 288, 393
FaeI CATG 2 cut(s) 209, 363
FaiI YATR 8 cut(s) 59, 198, 207, 245, 361, 465, 558, 593
FatI CATG 2 cut(s) 205, 359
FbaI TGATCA 1 cut(s) 250
Fnu4HI GCNGC 3 cut(s) 139, 217, 281
FokI GGATG 1 cut(s) 260
Fsp4HI GCNGC 3 cut(s) 139, 217, 281
GluI GCNGC 3 cut(s) 139, 217, 281
HaeIII GGCC 3 cut(s) 65, 138, 364
HapII CCGG 4 cut(s) 38, 53, 165, 260
HgaI GACGC 1 cut(s) 100
Hin1II CATG 2 cut(s) 209, 363
HincII GTYRAC 1 cut(s) 170
HindII GTYRAC 1 cut(s) 170
HinfI GANTC 4 cut(s) 225, 323, 356, 390
HpaII CCGG 4 cut(s) 38, 53, 165, 260
HphI GGTGA 2 cut(s) 332, 506
Hpy166II GTNNAC 1 cut(s) 170
Hpy188I TCNGA 5 cut(s) 49, 76, 309, 432, 529
Hpy188III TCNNGA 1 cut(s) 100
Hpy8I GTNNAC 1 cut(s) 170
Hpy99I CGWCG 2 cut(s) 137, 149
HpyAV CCTTC 1 cut(s) 35
HpyCH4III ACNGT 3 cut(s) 145, 509, 597
HpyCH4IV ACGT 1 cut(s) 172
HpyCH4V TGCA 4 cut(s) 33, 233, 338, 404
HpyF3I CTNAG 1 cut(s) 533
HpySE526I ACGT 1 cut(s) 172
Hsp92II CATG 2 cut(s) 209, 363
Ksp22I TGATCA 1 cut(s) 250
Kzo9I GATC 4 cut(s) 6, 44, 250, 529
Lsp1109I GCAGC 2 cut(s) 228, 267
LweI GCATC 1 cut(s) 551
MabI ACCWGGT 1 cut(s) 288
MaeII ACGT 1 cut(s) 172
MalI GATC 4 cut(s) 8, 46, 252, 531
MboI GATC 4 cut(s) 6, 44, 250, 529
MboII GAAGA 5 cut(s) 16, 121, 203, 452, 532
MflI RGATCY 2 cut(s) 44, 529
MlsI TGGCCA 1 cut(s) 65
MluCI AATT 4 cut(s) 314, 426, 437, 577
MluNI TGGCCA 1 cut(s) 65
MlyI GAGTC 1 cut(s) 219
MmeI TCCRAC 1 cut(s) 72
MnlI CCTC 9 cut(s) 35, 82, 91, 96, 171, 324, 370, 426, 485
Mox20I TGGCCA 1 cut(s) 65
MscI TGGCCA 1 cut(s) 65
Msp20I TGGCCA 1 cut(s) 65
MspI CCGG 4 cut(s) 38, 53, 165, 260
MspR9I CCNGG 5 cut(s) 38, 53, 165, 290, 395
MvaI CCWGG 2 cut(s) 290, 395
NciI CCSGG 3 cut(s) 38, 53, 165
NdeII GATC 4 cut(s) 6, 44, 250, 529
NlaIII CATG 2 cut(s) 209, 363
NlaIV GGNNCC 2 cut(s) 46, 399
NspI RCATGY 1 cut(s) 209
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PfeI GAWTC 3 cut(s) 323, 356, 390
PflFI GACNNNGTC 1 cut(s) 53
PfoI TCCNGGA 1 cut(s) 393
PkrI GCNGC 3 cut(s) 140, 218, 282
PleI GAGTC 1 cut(s) 219
PpsI GAGTC 1 cut(s) 219
PpuMI RGGWCCY 1 cut(s) 397
Psp5II RGGWCCY 1 cut(s) 397
Psp6I CCWGG 2 cut(s) 288, 393
PspGI CCWGG 2 cut(s) 288, 393
PspN4I GGNNCC 2 cut(s) 46, 399
PspPI GGNCC 4 cut(s) 22, 105, 363, 397
PspPPI RGGWCCY 1 cut(s) 397
PstI CTGCAG 1 cut(s) 406
PstNI CAGNNNCTG 1 cut(s) 410
PsuI RGATCY 2 cut(s) 44, 529
PsyI GACNNNGTC 1 cut(s) 53
RsaI GTAC 2 cut(s) 204, 589
RsaNI GTAC 2 cut(s) 203, 588
SatI GCNGC 3 cut(s) 139, 217, 281
Sau3AI GATC 4 cut(s) 6, 44, 250, 529
Sau96I GGNCC 4 cut(s) 22, 105, 363, 397
SchI GAGTC 1 cut(s) 219
ScrFI CCNGG 5 cut(s) 38, 53, 165, 290, 395
SetI ASST 7 cut(s) 83, 107, 175, 294, 372, 412, 496
SexAI ACCWGGT 1 cut(s) 288
SfaNI GCATC 1 cut(s) 551
SfcI CTRYAG 1 cut(s) 402
SinI GGWCC 3 cut(s) 22, 105, 397
SmlI CTYRAG 1 cut(s) 26
SmoI CTYRAG 1 cut(s) 26
Sse9I AATT 4 cut(s) 314, 426, 437, 577
SsiI CCGC 1 cut(s) 139
StyD4I CCNGG 5 cut(s) 36, 51, 163, 288, 393
TaaI ACNGT 3 cut(s) 145, 509, 597
TaiI ACGT 1 cut(s) 175
TasI AATT 4 cut(s) 314, 426, 437, 577
TatI WGTACW 1 cut(s) 202
TauI GCSGC 1 cut(s) 141
TfiI GAWTC 3 cut(s) 323, 356, 390
TseI GCWGC 2 cut(s) 216, 280
TspDTI ATGAA 4 cut(s) 17, 112, 315, 452
TspGWI ACGGA 1 cut(s) 169
Tth111I GACNNNGTC 1 cut(s) 53
VpaK11BI GGWCC 3 cut(s) 22, 105, 397
XagI CCTNNNNNAGG 1 cut(s) 374
XapI RAATTY 2 cut(s) 314, 426
XceI RCATGY 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.