pycom11g10840

F-box domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000111
Physical Location & Seq
Reverse (-)
9207367 .. 9208173
807 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g10840.1

Sequence Viewer

Length: 807 bp
ATGTTTGTAGCGAAGTGTCGGGTATTTTCGTTTCCTTGTTGTGTTCCTGCAACGACTTGTTATGCATGTTGTGTGACTCAAGGTTATATTTGGTTGACCCCTCCACCAAGGAAACCAAGAAATTGCCAGAATTATCGGAATTCAGTCAAGGTATATGGGGTTGGATTTGATCGTTCCACTTATGAACACAAGGTGGTTGTGGGAATCTACAATAAACACGATCGCTTAACCAACCCCTTCATCGATGATTTCGATGAAGGTGTTGTGTTTAGTGTTTATACGCTGGAAACCGATTCTTGGAGAAAGATTGAGGGACTGTTTCCGTACATTACTAGTCAACAAGGGATTATGCTGAATGGAGATCTCCATTGGTTTGGGGAAAGACTCGAAGATCAGTCGCAAGTGATTGTTTCCCTCACTCTAACGGGGGAGGAGAGGGTTCGAGAAATTCCACTCCCACTTGAATGCGATTCTGTTGAAAGTATTAAGAGGAAGATGAAATTGGGAGTCTTCAGACATTGGTTATGCATAACGCAGCATTCTTATCCTCGTGGTGGAACATATAACGAGTTTTGGGTCATGACGGAATATGGAGTGAGGGAGTCTTGGACTAAAATGAGGGTTTCCATCCCGTATTCGATGTTAAAACATTTTGGTTTCTGGACAGAGTCTCATGATTTGATGGTGTGCGGAGAACAGTTAATCAACATTCGTGGAATCGGCAAAGTTGGTCGTGTTTTTACGTGCTTGGAGAGCCTTGTTTCACTCAAACAACGTCAGAGAAGTAATTTGAAGATTGAAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

269

Amino Acids

31.18

Weight (kDa)

8.59

Isoelectric Point (pI)

34.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 43 - 221 4.8e-15 F-box associated beta propeller domain
FBA_3 PF08268 47 - 216 1.7e-11 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 690
AcsI RAATTY 2 cut(s) 139, 447
AcuI CTGAAG 1 cut(s) 496
AdeI CACNNNGTG 1 cut(s) 193
AfaI GTAC 1 cut(s) 326
AfiI CCNNNNNNNGG 2 cut(s) 297, 554
AgsI TTSAA 4 cut(s) 464, 479, 793, 800
AhlI ACTAGT 1 cut(s) 332
AjuI GAANNNNNNNTTGG 2 cut(s) 485, 517
Alw26I GTCTC 1 cut(s) 675
ApeKI GCWGC 1 cut(s) 535
ApoI RAATTY 2 cut(s) 139, 447
BauI CACGAG 1 cut(s) 549
BbsI GAAGAC 1 cut(s) 502
BbvI GCAGC 1 cut(s) 547
BccI CCATC 2 cut(s) 635, 676
BcoDI GTCTC 1 cut(s) 675
BcuI ACTAGT 1 cut(s) 332
BfaI CTAG 1 cut(s) 333
BglII AGATCT 1 cut(s) 361
BisI GCNGC 1 cut(s) 536
BlsI GCNGC 1 cut(s) 537
BpiI GAAGAC 1 cut(s) 502
BpuEI CTTGAG 1 cut(s) 63
Bsa29I ATCGAT 1 cut(s) 243
BsaAI YACGTR 1 cut(s) 744
BsaJI CCNNGG 1 cut(s) 107
Bsc4I CCNNNNNNNGG 2 cut(s) 297, 554
BseCI ATCGAT 1 cut(s) 243
BseDI CCNNGG 1 cut(s) 107
BseGI GGATG 1 cut(s) 627
BseLI CCNNNNNNNGG 2 cut(s) 297, 554
BseRI GAGGAG 1 cut(s) 446
BseXI GCAGC 1 cut(s) 547
Bsh1285I CGRYCG 1 cut(s) 223
BshVI ATCGAT 1 cut(s) 243
BsiEI CGRYCG 1 cut(s) 223
BslFI GGGAC 1 cut(s) 327
BslI CCNNNNNNNGG 2 cut(s) 297, 554
BsmAI GTCTC 1 cut(s) 675
BsmFI GGGAC 1 cut(s) 327
BsmI GAATGC 2 cut(s) 470, 538
Bsp143I GATC 4 cut(s) 169, 220, 361, 391
BspACI CCGC 1 cut(s) 690
BspDI ATCGAT 1 cut(s) 243
BspHI TCATGA 2 cut(s) 579, 673
BssECI CCNNGG 1 cut(s) 107
BssMI GATC 4 cut(s) 169, 220, 361, 391
BssSI CACGAG 1 cut(s) 549
BssT1I CCWWGG 1 cut(s) 107
Bst2BI CACGAG 1 cut(s) 549
Bst4CI ACNGT 2 cut(s) 318, 699
BstBAI YACGTR 1 cut(s) 744
BstF5I GGATG 1 cut(s) 627
BstKTI GATC 4 cut(s) 172, 223, 364, 394
BstMAI GTCTC 1 cut(s) 675
BstMBI GATC 4 cut(s) 169, 220, 361, 391
BstMCI CGRYCG 1 cut(s) 223
BstMWI GCNNNNNNNGC 1 cut(s) 753
BstNSI RCATGY 1 cut(s) 69
BstV1I GCAGC 1 cut(s) 547
BstV2I GAAGAC 1 cut(s) 502
BstX2I RGATCY 1 cut(s) 361
BstXI CCANNNNNNTGG 1 cut(s) 374
BstYI RGATCY 1 cut(s) 361
Bsu15I ATCGAT 1 cut(s) 243
BsuTUI ATCGAT 1 cut(s) 243
BtsCI GGATG 1 cut(s) 627
CciI TCATGA 2 cut(s) 579, 673
ClaI ATCGAT 1 cut(s) 243
Csp6I GTAC 1 cut(s) 325
CspCI CAANNNNNGTGG 2 cut(s) 694, 729
CviAII CATG 3 cut(s) 66, 580, 674
CviJI RGCY 1 cut(s) 756
CviKI_1 RGCY 1 cut(s) 756
CviQI GTAC 1 cut(s) 325
DpnI GATC 4 cut(s) 171, 222, 363, 393
DpnII GATC 4 cut(s) 169, 220, 361, 391
DraIII CACNNNGTG 1 cut(s) 193
Eco130I CCWWGG 1 cut(s) 107
Eco57I CTGAAG 1 cut(s) 496
EcoRI GAATTC 1 cut(s) 139
EcoT14I CCWWGG 1 cut(s) 107
EcoT22I ATGCAT 2 cut(s) 67, 530
ErhI CCWWGG 1 cut(s) 107
FaeI CATG 3 cut(s) 69, 583, 677
FaqI GGGAC 1 cut(s) 327
FatI CATG 3 cut(s) 65, 579, 673
Fnu4HI GCNGC 1 cut(s) 536
FokI GGATG 1 cut(s) 614
Fsp4HI GCNGC 1 cut(s) 536
FspBI CTAG 1 cut(s) 333
GluI GCNGC 1 cut(s) 536
Hin1II CATG 3 cut(s) 69, 583, 677
HincII GTYRAC 2 cut(s) 96, 338
HindII GTYRAC 2 cut(s) 96, 338
HinfI GANTC 9 cut(s) 76, 204, 293, 384, 470, 507, 602, 668, 717
Hpy166II GTNNAC 2 cut(s) 96, 338
Hpy188I TCNGA 3 cut(s) 138, 515, 780
Hpy188III TCNNGA 4 cut(s) 443, 580, 661, 674
Hpy8I GTNNAC 2 cut(s) 96, 338
HpyAV CCTTC 2 cut(s) 247, 251
HpyCH4III ACNGT 2 cut(s) 318, 699
HpyCH4IV ACGT 2 cut(s) 743, 775
HpyCH4V TGCA 3 cut(s) 50, 65, 528
HpyF10VI GCNNNNNNNGC 1 cut(s) 753
HpySE526I ACGT 2 cut(s) 743, 775
Hsp92II CATG 3 cut(s) 69, 583, 677
Kzo9I GATC 4 cut(s) 169, 220, 361, 391
LpnPI CCDG 4 cut(s) 60, 140, 269, 646
Lsp1109I GCAGC 1 cut(s) 547
MaeI CTAG 1 cut(s) 333
MaeII ACGT 2 cut(s) 743, 775
MaeIII GTNAC 1 cut(s) 73
MalI GATC 4 cut(s) 171, 222, 363, 393
MboI GATC 4 cut(s) 169, 220, 361, 391
MboII GAAGA 4 cut(s) 401, 502, 505, 805
MflI RGATCY 1 cut(s) 361
MluCI AATT 6 cut(s) 121, 130, 139, 447, 500, 787
MlyI GAGTC 5 cut(s) 70, 378, 516, 611, 677
MmeI TCCRAC 1 cut(s) 142
MnlI CCTC 9 cut(s) 111, 304, 424, 425, 429, 483, 558, 591, 612
Mph1103I ATGCAT 2 cut(s) 67, 530
MseI TTAA 4 cut(s) 227, 486, 644, 701
MslI CAYNNNNRTG 1 cut(s) 463
Mva1269I GAATGC 2 cut(s) 470, 538
MwoI GCNNNNNNNGC 1 cut(s) 753
NdeII GATC 4 cut(s) 169, 220, 361, 391
NlaIII CATG 3 cut(s) 69, 583, 677
NmuCI GTSAC 1 cut(s) 73
NsiI ATGCAT 2 cut(s) 67, 530
NspI RCATGY 1 cut(s) 69
PagI TCATGA 2 cut(s) 579, 673
PcsI WCGNNNNNNNCGW 1 cut(s) 249
PctI GAATGC 2 cut(s) 470, 538
PfeI GAWTC 4 cut(s) 204, 293, 470, 717
PflFI GACNNNGTC 1 cut(s) 667
PkrI GCNGC 1 cut(s) 537
Ple19I CGATCG 1 cut(s) 223
PleI GAGTC 5 cut(s) 70, 378, 515, 610, 676
PpsI GAGTC 5 cut(s) 70, 378, 515, 610, 676
Ppu21I YACGTR 1 cut(s) 744
PsuI RGATCY 1 cut(s) 361
PsyI GACNNNGTC 1 cut(s) 667
PvuI CGATCG 1 cut(s) 223
RsaI GTAC 1 cut(s) 326
RsaNI GTAC 1 cut(s) 325
RseI CAYNNNNRTG 1 cut(s) 463
SaqAI TTAA 4 cut(s) 227, 486, 644, 701
SatI GCNGC 1 cut(s) 536
Sau3AI GATC 4 cut(s) 169, 220, 361, 391
SchI GAGTC 5 cut(s) 70, 378, 516, 611, 677
SetI ASST 6 cut(s) 85, 153, 195, 262, 746, 778
SmiMI CAYNNNNRTG 1 cut(s) 463
SmlI CTYRAG 1 cut(s) 78
SmoI CTYRAG 1 cut(s) 78
SpeI ACTAGT 1 cut(s) 332
Sse9I AATT 6 cut(s) 121, 130, 139, 447, 500, 787
SsiI CCGC 1 cut(s) 690
SspMI CTAG 1 cut(s) 333
StyI CCWWGG 1 cut(s) 107
TaaI ACNGT 2 cut(s) 318, 699
TaiI ACGT 2 cut(s) 746, 778
TaqI TCGA 5 cut(s) 243, 252, 387, 442, 638
TasI AATT 6 cut(s) 121, 130, 139, 447, 500, 787
TfiI GAWTC 4 cut(s) 204, 293, 470, 717
Tru1I TTAA 4 cut(s) 227, 486, 644, 701
Tru9I TTAA 4 cut(s) 227, 486, 644, 701
TseFI GTSAC 1 cut(s) 73
TseI GCWGC 1 cut(s) 535
Tsp45I GTSAC 1 cut(s) 73
TspDTI ATGAA 4 cut(s) 198, 229, 270, 512
TspGWI ACGGA 2 cut(s) 312, 599
Tth111I GACNNNGTC 1 cut(s) 667
XapI RAATTY 2 cut(s) 139, 447
XceI RCATGY 1 cut(s) 69
XspI CTAG 1 cut(s) 333
Zsp2I ATGCAT 2 cut(s) 67, 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.