FvH4_5g33121

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000111
Physical Location & Seq
Forward (+)
23927852 .. 23929111
1260 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g33121.t1

Sequence Viewer

Length: 630 bp
ATGGAAGTTGGTTCTAAAAAAAAGAAGACAGAAGTCCAGGGTGGCCAAAATGTCGAGCTTCCACCCGAGATCATAGATGGTTTTCTTTCAAGGTTACCAGTGAATCCCTTGCGCCGCTTCAAGCTTGTGTCCAAGTCATGGCAGTCCTTAATCTTCGATCCTGATTTCGTCGCCAACTATTCCAAAGCCGCCATTGAGAATAAGGATGTCTTCTTCAGAAGATGGCGCCTCCTCTTTACTATTGATATGCCACAAAGAGGGATATACTCTTTGGATCTTGACCAGTTTCTCAATGAGAATCCTACTGCTGGTGTTGAAGGTCTAGTAGCAGCACCCACTGAGCTCGGCTTTGTTTACAATCATCTTCCGAGACGTGGACTTGATTGGGTTCCCTATGTCCATTACTCCTGCTATGGCTTGTTCTTGACTCAGTCATCACTAGTTATGTACAATTTTAATGATGGAACATTTTGGGATCTATTGATTCGTGACATTCCCCAAGATATTAGTTCTATCATTAGCTTTGGTATCTATGTGGAGAGCCTACCATCGGTACTCATGGTCAAGAACAATGTAAGAGGAGTAAAAATCACAGATGATCGGAATCCACTCAGTAACATTCTCGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

210

Amino Acids

23.94

Weight (kDa)

5.77

Isoelectric Point (pI)

50.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 19 - 56 6.6e-06 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 225
AccB7I CCANNNNNTGG 1 cut(s) 138
AciI CCGC 2 cut(s) 115, 189
AclWI GGATC 3 cut(s) 152, 282, 483
AcoI YGGCCR 1 cut(s) 43
AcuI CTGAAG 1 cut(s) 199
AcyI GRCGYC 1 cut(s) 226
AfaI GTAC 2 cut(s) 449, 555
AfiI CCNNNNNNNGG 5 cut(s) 138, 257, 308, 374, 550
AgsI TTSAA 3 cut(s) 90, 121, 317
AhlI ACTAGT 1 cut(s) 439
AjiI CACGTC 1 cut(s) 374
AjnI CCWGG 1 cut(s) 36
AluBI AGCT 4 cut(s) 58, 124, 343, 522
AluI AGCT 4 cut(s) 58, 124, 343, 522
Alw21I GWGCWC 1 cut(s) 345
Alw26I GTCTC 1 cut(s) 364
AlwI GGATC 3 cut(s) 152, 282, 483
Ama87I CYCGRG 1 cut(s) 65
AoxI GGCC 1 cut(s) 43
ApeKI GCWGC 1 cut(s) 329
AspLEI GCGC 2 cut(s) 114, 228
AvaI CYCGRG 1 cut(s) 65
BalI TGGCCA 1 cut(s) 45
BanI GGYRCC 1 cut(s) 225
BanII GRGCYC 1 cut(s) 345
BbsI GAAGAC 2 cut(s) 32, 202
Bbv12I GWGCWC 1 cut(s) 345
BbvI GCAGC 1 cut(s) 341
BccI CCATC 4 cut(s) 71, 216, 455, 556
BciT130I CCWGG 1 cut(s) 38
BcoDI GTCTC 1 cut(s) 364
BcuI ACTAGT 1 cut(s) 439
BfaI CTAG 2 cut(s) 323, 440
BfoI RGCGCY 1 cut(s) 229
BisI GCNGC 3 cut(s) 115, 189, 330
BlsI GCNGC 3 cut(s) 116, 190, 331
Bme1390I CCNGG 1 cut(s) 38
BmeT110I CYCGRG 1 cut(s) 65
BmgBI CACGTC 1 cut(s) 374
BmiI GGNNCC 2 cut(s) 227, 390
BmrFI CCNGG 1 cut(s) 38
BoxI GACNNNNGTC 1 cut(s) 32
BpiI GAAGAC 2 cut(s) 32, 202
BsaBI GATNNNNATC 1 cut(s) 603
BsaHI GRCGYC 1 cut(s) 226
BsaJI CCNNGG 1 cut(s) 37
Bsc4I CCNNNNNNNGG 5 cut(s) 138, 257, 308, 374, 550
Bse1I ACTGG 2 cut(s) 98, 283
Bse8I GATNNNNATC 1 cut(s) 603
BseBI CCWGG 1 cut(s) 38
BseDI CCNNGG 1 cut(s) 37
BseGI GGATG 1 cut(s) 211
BseJI GATNNNNATC 1 cut(s) 603
BseLI CCNNNNNNNGG 5 cut(s) 138, 257, 308, 374, 550
BseMII CTCAG 3 cut(s) 330, 443, 625
BseNI ACTGG 2 cut(s) 98, 283
BseRI GAGGAG 2 cut(s) 221, 594
BseXI GCAGC 1 cut(s) 341
BshFI GGCC 1 cut(s) 45
BshNI GGYRCC 1 cut(s) 225
BsiHKAI GWGCWC 1 cut(s) 345
BsiHKCI CYCGRG 1 cut(s) 65
BslI CCNNNNNNNGG 5 cut(s) 138, 257, 308, 374, 550
BsmAI GTCTC 1 cut(s) 364
BsmBI CGTCTC 1 cut(s) 364
BsnI GGCC 1 cut(s) 45
BsoBI CYCGRG 1 cut(s) 65
Bsp1286I GDGCHC 1 cut(s) 345
Bsp1407I TGTACA 1 cut(s) 447
Bsp143I GATC 5 cut(s) 69, 157, 274, 475, 598
BspACI CCGC 2 cut(s) 115, 189
BspANI GGCC 1 cut(s) 45
BspCNI CTCAG 3 cut(s) 331, 442, 624
BspLI GGNNCC 2 cut(s) 227, 390
BspPI GGATC 3 cut(s) 152, 282, 483
BspT107I GGYRCC 1 cut(s) 225
BsrGI TGTACA 1 cut(s) 447
BsrI ACTGG 2 cut(s) 98, 283
BssECI CCNNGG 1 cut(s) 37
BssMI GATC 5 cut(s) 69, 157, 274, 475, 598
BssNI GRCGYC 1 cut(s) 226
Bst2UI CCWGG 1 cut(s) 38
BstACI GRCGYC 1 cut(s) 226
BstAUI TGTACA 1 cut(s) 447
BstDEI CTNAG 3 cut(s) 339, 429, 611
BstEII GGTNACC 1 cut(s) 93
BstF5I GGATG 1 cut(s) 211
BstH2I RGCGCY 1 cut(s) 229
BstHHI GCGC 2 cut(s) 114, 228
BstKTI GATC 5 cut(s) 72, 160, 277, 478, 601
BstMAI GTCTC 1 cut(s) 364
BstMBI GATC 5 cut(s) 69, 157, 274, 475, 598
BstNI CCWGG 1 cut(s) 38
BstPAI GACNNNNGTC 1 cut(s) 32
BstPI GGTNACC 1 cut(s) 93
BstSCI CCNGG 1 cut(s) 36
BstV1I GCAGC 1 cut(s) 341
BstV2I GAAGAC 2 cut(s) 32, 202
BstX2I RGATCY 2 cut(s) 274, 475
BstYI RGATCY 2 cut(s) 274, 475
BsuRI GGCC 1 cut(s) 45
BtrI CACGTC 1 cut(s) 374
BtsCI GGATG 1 cut(s) 211
BtsIMutI CAGTG 2 cut(s) 105, 336
CfoI GCGC 2 cut(s) 114, 228
Csp6I GTAC 2 cut(s) 448, 554
CviAII CATG 2 cut(s) 138, 559
CviJI RGCY 9 cut(s) 45, 58, 124, 188, 343, 348, 417, 522, 543
CviKI_1 RGCY 9 cut(s) 45, 58, 124, 188, 343, 348, 417, 522, 543
CviQI GTAC 2 cut(s) 448, 554
DdeI CTNAG 3 cut(s) 339, 429, 611
DinI GGCGCC 1 cut(s) 227
DpnI GATC 5 cut(s) 71, 159, 276, 477, 600
DpnII GATC 5 cut(s) 69, 157, 274, 475, 598
EaeI YGGCCR 1 cut(s) 43
Ecl136II GAGCTC 1 cut(s) 343
Eco24I GRGCYC 1 cut(s) 345
Eco53kI GAGCTC 1 cut(s) 343
Eco57I CTGAAG 1 cut(s) 199
Eco88I CYCGRG 1 cut(s) 65
Eco91I GGTNACC 1 cut(s) 93
EcoICRI GAGCTC 1 cut(s) 343
EcoO65I GGTNACC 1 cut(s) 93
EcoRII CCWGG 1 cut(s) 36
EcoT38I GRGCYC 1 cut(s) 345
EgeI GGCGCC 1 cut(s) 227
EheI GGCGCC 1 cut(s) 227
Esp3I CGTCTC 1 cut(s) 364
FaeI CATG 2 cut(s) 141, 562
FaiI YATR 9 cut(s) 74, 139, 248, 265, 396, 414, 446, 534, 560
FalI AAGNNNNNCTT 2 cut(s) 194, 226
FatI CATG 2 cut(s) 137, 558
Fnu4HI GCNGC 3 cut(s) 115, 189, 330
FokI GGATG 1 cut(s) 218
FriOI GRGCYC 1 cut(s) 345
Fsp4HI GCNGC 3 cut(s) 115, 189, 330
FspBI CTAG 2 cut(s) 323, 440
GlaI GCGC 2 cut(s) 113, 227
GluI GCNGC 3 cut(s) 115, 189, 330
HaeII RGCGCY 1 cut(s) 229
HaeIII GGCC 1 cut(s) 45
HhaI GCGC 2 cut(s) 114, 228
Hin1I GRCGYC 1 cut(s) 226
Hin1II CATG 2 cut(s) 141, 562
Hin6I GCGC 2 cut(s) 112, 226
HinP1I GCGC 2 cut(s) 112, 226
HindIII AAGCTT 1 cut(s) 122
HinfI GANTC 5 cut(s) 103, 298, 427, 484, 604
Hpy166II GTNNAC 2 cut(s) 355, 377
Hpy188I TCNGA 3 cut(s) 218, 369, 603
Hpy188III TCNNGA 6 cut(s) 161, 278, 424, 488, 565, 623
Hpy8I GTNNAC 2 cut(s) 355, 377
Hpy99I CGWCG 1 cut(s) 173
HpyAV CCTTC 1 cut(s) 311
HpyCH4IV ACGT 1 cut(s) 373
HpyF3I CTNAG 3 cut(s) 339, 429, 611
HpySE526I ACGT 1 cut(s) 373
Hsp92I GRCGYC 1 cut(s) 226
Hsp92II CATG 2 cut(s) 141, 562
HspAI GCGC 2 cut(s) 112, 226
KasI GGCGCC 1 cut(s) 225
Kzo9I GATC 5 cut(s) 69, 157, 274, 475, 598
LpnPI CCDG 7 cut(s) 23, 50, 111, 174, 294, 296, 421
Lsp1109I GCAGC 1 cut(s) 341
MaeI CTAG 2 cut(s) 323, 440
MaeII ACGT 1 cut(s) 373
MaeIII GTNAC 3 cut(s) 93, 488, 614
MalI GATC 5 cut(s) 71, 159, 276, 477, 600
MboI GATC 5 cut(s) 69, 157, 274, 475, 598
MboII GAAGA 6 cut(s) 37, 145, 202, 205, 231, 356
MflI RGATCY 2 cut(s) 274, 475
MhlI GDGCHC 1 cut(s) 345
MlsI TGGCCA 1 cut(s) 45
MluCI AATT 1 cut(s) 451
MluNI TGGCCA 1 cut(s) 45
Mly113I GGCGCC 1 cut(s) 226
MlyI GAGTC 1 cut(s) 421
MnlI CCTC 4 cut(s) 239, 242, 251, 572
Mox20I TGGCCA 1 cut(s) 45
MscI TGGCCA 1 cut(s) 45
MseI TTAA 2 cut(s) 149, 456
Msp20I TGGCCA 1 cut(s) 45
MspR9I CCNGG 1 cut(s) 38
MvaI CCWGG 1 cut(s) 38
NarI GGCGCC 1 cut(s) 226
NdeII GATC 5 cut(s) 69, 157, 274, 475, 598
NlaIII CATG 2 cut(s) 141, 562
NlaIV GGNNCC 2 cut(s) 227, 390
NmeAIII GCCGAG 1 cut(s) 324
NmuCI GTSAC 1 cut(s) 488
PfeI GAWTC 4 cut(s) 103, 298, 484, 604
PflFI GACNNNGTC 1 cut(s) 430
PflMI CCANNNNNTGG 1 cut(s) 138
PkrI GCNGC 3 cut(s) 116, 190, 331
PleI GAGTC 1 cut(s) 421
PluTI GGCGCC 1 cut(s) 229
PpsI GAGTC 1 cut(s) 421
PshAI GACNNNNGTC 1 cut(s) 32
Psp124BI GAGCTC 1 cut(s) 345
Psp6I CCWGG 1 cut(s) 36
PspEI GGTNACC 1 cut(s) 93
PspGI CCWGG 1 cut(s) 36
PspN4I GGNNCC 2 cut(s) 227, 390
PsuI RGATCY 2 cut(s) 274, 475
PsyI GACNNNGTC 1 cut(s) 430
RsaI GTAC 2 cut(s) 449, 555
RsaNI GTAC 2 cut(s) 448, 554
SacI GAGCTC 1 cut(s) 345
SaqAI TTAA 2 cut(s) 149, 456
SatI GCNGC 3 cut(s) 115, 189, 330
Sau3AI GATC 5 cut(s) 69, 157, 274, 475, 598
SchI GAGTC 1 cut(s) 421
ScrFI CCNGG 1 cut(s) 38
SduI GDGCHC 1 cut(s) 345
SetI ASST 7 cut(s) 60, 95, 126, 322, 345, 376, 524
SfoI GGCGCC 1 cut(s) 227
SpeI ACTAGT 1 cut(s) 439
Sse9I AATT 1 cut(s) 451
SsiI CCGC 2 cut(s) 115, 189
SspDI GGCGCC 1 cut(s) 225
SspMI CTAG 2 cut(s) 323, 440
SstI GAGCTC 1 cut(s) 345
StyD4I CCNGG 1 cut(s) 36
TaiI ACGT 1 cut(s) 376
TaqI TCGA 3 cut(s) 54, 156, 624
TasI AATT 1 cut(s) 451
TatI WGTACW 1 cut(s) 447
TauI GCSGC 2 cut(s) 117, 191
TfiI GAWTC 4 cut(s) 103, 298, 484, 604
Tru1I TTAA 2 cut(s) 149, 456
Tru9I TTAA 2 cut(s) 149, 456
TscAI CASTG 2 cut(s) 105, 343
TseFI GTSAC 1 cut(s) 488
TseI GCWGC 1 cut(s) 329
Tsp45I GTSAC 1 cut(s) 488
TspRI CASTG 2 cut(s) 105, 343
Tth111I GACNNNGTC 1 cut(s) 430
Van91I CCANNNNNTGG 1 cut(s) 138
XspI CTAG 2 cut(s) 323, 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.