FvH4_7g28041

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000111
Physical Location & Seq
Reverse (-)
20838895 .. 20840847
1953 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g28041.t1

Sequence Viewer

Length: 513 bp
ATGGAAGATCGTCCTATAAAAAAGAAGAGGACAGAAGTCCACGGAAGCCAAAACGTCGAGCTTCCACCCGAGATTATAGATGCGATTCTTTTAAGGTTACCAGTGAAGCCCTTGTGCCGCTTCAAGCTTGTATCCAAGTCATGGCAATCCCTAATCTCCCATCCTGATTTCGTCGCAAACCATTCTAAAGCCGCCGTTGAGAATAAGGACAGACGGCGCCTCTTTATCAATAATTTATTGTACTCGTCATTTCTGCTATACTCTTTGAATCTCGACCAGTTTCTCAATGAGAATGATCATACCGTTGATGTTGATTTAGTAGCAGCACCCACTGAGCTTGATTTTTGGGCTCCCTCTGGTGGCTGTCCAAAAGGATCTGATGTTAAACAGATGGGTGTGGAGAGTAATTTGGCTGATAAACCTGAGGGGGCTGCTAACCGGATAGATTGGGAGAATAGGAGAGTTGGTTGCAACATATTTCCAGACACCAGAAACAGGAAATCCTTTTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

171

Amino Acids

19.33

Weight (kDa)

7.74

Isoelectric Point (pI)

41.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 20 - 57 1.4e-09 F-box domain
F-box-like PF12937 20 - 55 4e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 216
AccB7I CCANNNNNTGG 1 cut(s) 141
AciI CCGC 2 cut(s) 118, 192
AclWI GGATC 1 cut(s) 382
AcyI GRCGYC 1 cut(s) 217
AfaI GTAC 1 cut(s) 242
AfiI CCNNNNNNNGG 3 cut(s) 141, 359, 495
AgsI TTSAA 2 cut(s) 124, 268
AluBI AGCT 3 cut(s) 61, 127, 337
AluI AGCT 3 cut(s) 61, 127, 337
AlwI GGATC 1 cut(s) 382
Ama87I CYCGRG 1 cut(s) 68
ApeKI GCWGC 2 cut(s) 323, 431
AspLEI GCGC 1 cut(s) 219
AvaI CYCGRG 1 cut(s) 68
AxyI CCTNAGG 1 cut(s) 423
BanI GGYRCC 1 cut(s) 216
BanII GRGCYC 1 cut(s) 352
BbvI GCAGC 2 cut(s) 335, 418
BccI CCATC 2 cut(s) 168, 385
BceAI ACGGC 2 cut(s) 179, 230
BciVI GTATCC 1 cut(s) 142
BclI TGATCA 1 cut(s) 295
BfoI RGCGCY 1 cut(s) 220
BfuI GTATCC 1 cut(s) 142
BisI GCNGC 4 cut(s) 118, 192, 324, 432
BlsI GCNGC 4 cut(s) 119, 193, 325, 433
BmeT110I CYCGRG 1 cut(s) 68
BmiI GGNNCC 2 cut(s) 218, 351
BmsI GCATC 1 cut(s) 70
BoxI GACNNNNGTC 1 cut(s) 35
BsaHI GRCGYC 1 cut(s) 217
BsaJI CCNNGG 1 cut(s) 40
BsaWI WCCGGW 1 cut(s) 438
BsaXI ACNNNNNCTCC 2 cut(s) 451, 481
Bsc4I CCNNNNNNNGG 3 cut(s) 141, 359, 495
Bse1I ACTGG 2 cut(s) 101, 277
Bse21I CCTNAGG 1 cut(s) 423
BseDI CCNNGG 1 cut(s) 40
BseGI GGATG 1 cut(s) 160
BseLI CCNNNNNNNGG 3 cut(s) 141, 359, 495
BseMII CTCAG 2 cut(s) 324, 414
BseNI ACTGG 2 cut(s) 101, 277
BseXI GCAGC 2 cut(s) 335, 418
BshNI GGYRCC 1 cut(s) 216
BsiHKCI CYCGRG 1 cut(s) 68
BsiSI CCGG 1 cut(s) 439
BslI CCNNNNNNNGG 3 cut(s) 141, 359, 495
BsoBI CYCGRG 1 cut(s) 68
Bsp1286I GDGCHC 1 cut(s) 352
Bsp143I GATC 3 cut(s) 7, 295, 374
BspACI CCGC 2 cut(s) 118, 192
BspCNI CTCAG 2 cut(s) 325, 415
BspLI GGNNCC 2 cut(s) 218, 351
BspPI GGATC 1 cut(s) 382
BspT107I GGYRCC 1 cut(s) 216
BsrI ACTGG 2 cut(s) 101, 277
BssECI CCNNGG 1 cut(s) 40
BssMI GATC 3 cut(s) 7, 295, 374
BssNI GRCGYC 1 cut(s) 217
Bst4CI ACNGT 1 cut(s) 304
Bst6I CTCTTC 1 cut(s) 20
BstACI GRCGYC 1 cut(s) 217
BstDEI CTNAG 2 cut(s) 333, 423
BstDSI CCRYGG 1 cut(s) 40
BstEII GGTNACC 1 cut(s) 96
BstF5I GGATG 1 cut(s) 160
BstH2I RGCGCY 1 cut(s) 220
BstHHI GCGC 1 cut(s) 219
BstKTI GATC 3 cut(s) 10, 298, 377
BstMBI GATC 3 cut(s) 7, 295, 374
BstPAI GACNNNNGTC 1 cut(s) 35
BstPI GGTNACC 1 cut(s) 96
BstV1I GCAGC 2 cut(s) 335, 418
BstX2I RGATCY 1 cut(s) 374
BstYI RGATCY 1 cut(s) 374
Bsu36I CCTNAGG 1 cut(s) 423
BsuI GTATCC 1 cut(s) 142
BtgI CCRYGG 1 cut(s) 40
BtsCI GGATG 1 cut(s) 160
BtsIMutI CAGTG 2 cut(s) 108, 330
CfoI GCGC 1 cut(s) 219
Csp6I GTAC 1 cut(s) 241
CspCI CAANNNNNGTGG 2 cut(s) 319, 354
CviAII CATG 1 cut(s) 141
CviQI GTAC 1 cut(s) 241
DdeI CTNAG 2 cut(s) 333, 423
DinI GGCGCC 1 cut(s) 218
DpnI GATC 3 cut(s) 9, 297, 376
DpnII GATC 3 cut(s) 7, 295, 374
Eam1104I CTCTTC 1 cut(s) 20
EarI CTCTTC 1 cut(s) 20
Eco24I GRGCYC 1 cut(s) 352
Eco81I CCTNAGG 1 cut(s) 423
Eco88I CYCGRG 1 cut(s) 68
Eco91I GGTNACC 1 cut(s) 96
EcoO65I GGTNACC 1 cut(s) 96
EcoT38I GRGCYC 1 cut(s) 352
EgeI GGCGCC 1 cut(s) 218
EheI GGCGCC 1 cut(s) 218
FaeI CATG 1 cut(s) 144
FaiI YATR 6 cut(s) 17, 77, 142, 259, 300, 476
FatI CATG 1 cut(s) 140
FbaI TGATCA 1 cut(s) 295
Fnu4HI GCNGC 4 cut(s) 118, 192, 324, 432
FokI GGATG 1 cut(s) 147
FriOI GRGCYC 1 cut(s) 352
Fsp4HI GCNGC 4 cut(s) 118, 192, 324, 432
GlaI GCGC 1 cut(s) 218
GluI GCNGC 4 cut(s) 118, 192, 324, 432
HaeII RGCGCY 1 cut(s) 220
HapII CCGG 1 cut(s) 439
HhaI GCGC 1 cut(s) 219
Hin1I GRCGYC 1 cut(s) 217
Hin1II CATG 1 cut(s) 144
Hin6I GCGC 1 cut(s) 217
HinP1I GCGC 1 cut(s) 217
HindIII AAGCTT 1 cut(s) 125
HinfI GANTC 2 cut(s) 85, 268
HpaII CCGG 1 cut(s) 439
Hpy166II GTNNAC 1 cut(s) 40
Hpy188I TCNGA 1 cut(s) 379
Hpy188III TCNNGA 3 cut(s) 164, 272, 482
Hpy8I GTNNAC 1 cut(s) 40
Hpy99I CGWCG 2 cut(s) 59, 176
HpyCH4III ACNGT 1 cut(s) 304
HpyCH4IV ACGT 1 cut(s) 54
HpyCH4V TGCA 1 cut(s) 471
HpyF3I CTNAG 2 cut(s) 333, 423
HpySE526I ACGT 1 cut(s) 54
Hsp92I GRCGYC 1 cut(s) 217
Hsp92II CATG 1 cut(s) 144
HspAI GCGC 1 cut(s) 217
KasI GGCGCC 1 cut(s) 216
Ksp22I TGATCA 1 cut(s) 295
Kzo9I GATC 3 cut(s) 7, 295, 374
LmnI GCTCC 1 cut(s) 355
LpnPI CCDG 9 cut(s) 114, 177, 290, 342, 435, 452, 481, 495, 502
Lsp1109I GCAGC 2 cut(s) 335, 418
LweI GCATC 1 cut(s) 70
MaeII ACGT 1 cut(s) 54
MaeIII GTNAC 1 cut(s) 96
MalI GATC 3 cut(s) 9, 297, 376
MboI GATC 3 cut(s) 7, 295, 374
MboII GAAGA 2 cut(s) 17, 37
MflI RGATCY 1 cut(s) 374
MhlI GDGCHC 1 cut(s) 352
MluCI AATT 2 cut(s) 232, 406
Mly113I GGCGCC 1 cut(s) 217
MnlI CCTC 4 cut(s) 21, 230, 364, 418
MseI TTAA 2 cut(s) 92, 384
MspI CCGG 1 cut(s) 439
NarI GGCGCC 1 cut(s) 217
NdeII GATC 3 cut(s) 7, 295, 374
NlaIII CATG 1 cut(s) 144
NlaIV GGNNCC 2 cut(s) 218, 351
PfeI GAWTC 2 cut(s) 85, 268
PflMI CCANNNNNTGG 1 cut(s) 141
PkrI GCNGC 4 cut(s) 119, 193, 325, 433
PluTI GGCGCC 1 cut(s) 220
PshAI GACNNNNGTC 1 cut(s) 35
PspEI GGTNACC 1 cut(s) 96
PspN4I GGNNCC 2 cut(s) 218, 351
PsuI RGATCY 1 cut(s) 374
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
SaqAI TTAA 2 cut(s) 92, 384
SatI GCNGC 4 cut(s) 118, 192, 324, 432
Sau3AI GATC 3 cut(s) 7, 295, 374
SduI GDGCHC 1 cut(s) 352
SetI ASST 6 cut(s) 57, 63, 98, 129, 339, 424
SfaNI GCATC 1 cut(s) 70
SfoI GGCGCC 1 cut(s) 218
Sse9I AATT 2 cut(s) 232, 406
SsiI CCGC 2 cut(s) 118, 192
SspDI GGCGCC 1 cut(s) 216
TaaI ACNGT 1 cut(s) 304
TaiI ACGT 1 cut(s) 57
TaqI TCGA 2 cut(s) 57, 273
TasI AATT 2 cut(s) 232, 406
TatI WGTACW 1 cut(s) 240
TauI GCSGC 2 cut(s) 120, 194
TfiI GAWTC 2 cut(s) 85, 268
Tru1I TTAA 2 cut(s) 92, 384
Tru9I TTAA 2 cut(s) 92, 384
TscAI CASTG 2 cut(s) 108, 337
TseI GCWGC 2 cut(s) 323, 431
TspGWI ACGGA 1 cut(s) 57
TspRI CASTG 2 cut(s) 108, 337
Van91I CCANNNNNTGG 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.