Rh7CG439300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000111
Physical Location & Seq
Reverse (-)
57511518 .. 57512935
1418 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG439300.1

Sequence Viewer

Length: 297 bp
ATGTTCTCTTCCGGTCCGGTACCAGTGCTGCGTTGGGAATGTACAATTTCAATGATTTTAGCTGTCAAGGTCTATCCATTCCTGGATATCCTAAAGTTAGGGGGGCTGGTTTCTACTTGGAGAGCCTTGTTTCACTGGATGATCATCGCGATTTTAATGAGCATATCCAGCATGAGAGGAATCTTAGCTGAATACTGGATGAGATACACTCTTGTTGTCTTCCAGATGCTGACTTTTGTGGTGCACGATCGTAGTTTATGGTTGGTTTCTCTTCCAGGAATGTTTCAGTTGCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

11.38

Weight (kDa)

9.51

Isoelectric Point (pI)

56.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 19
AccB1I GGYRCC 1 cut(s) 19
AccII CGCG 1 cut(s) 149
AfaI GTAC 2 cut(s) 21, 43
AgsI TTSAA 1 cut(s) 51
AjnI CCWGG 2 cut(s) 81, 274
AluBI AGCT 2 cut(s) 62, 188
AluI AGCT 2 cut(s) 62, 188
Alw21I GWGCWC 1 cut(s) 246
Alw44I GTGCAC 1 cut(s) 242
AlwNI CAGNNNCTG 2 cut(s) 229, 292
ApaLI GTGCAC 1 cut(s) 242
ApeKI GCWGC 1 cut(s) 28
Asp718I GGTACC 1 cut(s) 19
AspS9I GGNCC 1 cut(s) 14
AvaII GGWCC 1 cut(s) 14
BaeGI GKGCMC 1 cut(s) 246
BanI GGYRCC 1 cut(s) 19
BbsI GAAGAC 1 cut(s) 211
Bbv12I GWGCWC 1 cut(s) 246
BbvI GCAGC 1 cut(s) 15
BciT130I CCWGG 2 cut(s) 83, 276
BclI TGATCA 1 cut(s) 141
BfmI CTRYAG 1 cut(s) 293
BisI GCNGC 1 cut(s) 29
BlsI GCNGC 1 cut(s) 30
Bme1390I CCNGG 2 cut(s) 83, 276
Bme18I GGWCC 1 cut(s) 14
BmgT120I GGNCC 1 cut(s) 14
BmiI GGNNCC 1 cut(s) 21
BmrFI CCNGG 2 cut(s) 83, 276
BmsI GCATC 1 cut(s) 216
BpiI GAAGAC 1 cut(s) 211
BplI GAGNNNNNCTC 2 cut(s) 193, 225
BsaBI GATNNNNATC 1 cut(s) 143
BsaWI WCCGGW 2 cut(s) 11, 16
Bse1I ACTGG 3 cut(s) 23, 140, 200
Bse8I GATNNNNATC 1 cut(s) 143
BseBI CCWGG 2 cut(s) 83, 276
BseGI GGATG 2 cut(s) 144, 204
BseJI GATNNNNATC 1 cut(s) 143
BseNI ACTGG 3 cut(s) 23, 140, 200
BseSI GKGCMC 1 cut(s) 246
BseXI GCAGC 1 cut(s) 15
Bsh1236I CGCG 1 cut(s) 149
Bsh1285I CGRYCG 1 cut(s) 250
BshNI GGYRCC 1 cut(s) 19
BsiEI CGRYCG 1 cut(s) 250
BsiHKAI GWGCWC 1 cut(s) 246
BsiSI CCGG 2 cut(s) 12, 17
Bsp1286I GDGCHC 1 cut(s) 246
Bsp1407I TGTACA 1 cut(s) 41
Bsp143I GATC 2 cut(s) 141, 247
Bsp68I TCGCGA 1 cut(s) 149
BspFNI CGCG 1 cut(s) 149
BspLI GGNNCC 1 cut(s) 21
BspT107I GGYRCC 1 cut(s) 19
BsrGI TGTACA 1 cut(s) 41
BsrI ACTGG 3 cut(s) 23, 140, 200
BssMI GATC 2 cut(s) 141, 247
Bst2UI CCWGG 2 cut(s) 83, 276
Bst6I CTCTTC 2 cut(s) 13, 276
BstAUI TGTACA 1 cut(s) 41
BstDEI CTNAG 1 cut(s) 184
BstF5I GGATG 2 cut(s) 144, 204
BstFNI CGCG 1 cut(s) 149
BstKTI GATC 2 cut(s) 144, 250
BstMBI GATC 2 cut(s) 141, 247
BstMCI CGRYCG 1 cut(s) 250
BstMWI GCNNNNNNNGC 1 cut(s) 168
BstNI CCWGG 2 cut(s) 83, 276
BstSCI CCNGG 2 cut(s) 81, 274
BstSFI CTRYAG 1 cut(s) 293
BstSLI GKGCMC 1 cut(s) 246
BstUI CGCG 1 cut(s) 149
BstV1I GCAGC 1 cut(s) 15
BstV2I GAAGAC 1 cut(s) 211
BtgZI GCGATG 1 cut(s) 130
BtsCI GGATG 2 cut(s) 144, 204
BtsIMutI CAGTG 2 cut(s) 30, 133
BtuMI TCGCGA 1 cut(s) 149
CaiI CAGNNNCTG 2 cut(s) 229, 292
Cfr13I GGNCC 1 cut(s) 14
CpoI CGGWCCG 1 cut(s) 14
Csp6I GTAC 2 cut(s) 20, 42
CspI CGGWCCG 1 cut(s) 14
CviAII CATG 1 cut(s) 172
CviJI RGCY 4 cut(s) 62, 106, 125, 188
CviKI_1 RGCY 4 cut(s) 62, 106, 125, 188
CviQI GTAC 2 cut(s) 20, 42
DdeI CTNAG 1 cut(s) 184
DpnI GATC 2 cut(s) 143, 249
DpnII GATC 2 cut(s) 141, 247
Eam1104I CTCTTC 2 cut(s) 13, 276
EarI CTCTTC 2 cut(s) 13, 276
Eco32I GATATC 1 cut(s) 88
Eco47I GGWCC 1 cut(s) 14
EcoRII CCWGG 2 cut(s) 81, 274
EcoRV GATATC 1 cut(s) 88
FaeI CATG 1 cut(s) 175
FaiI YATR 3 cut(s) 164, 173, 259
FatI CATG 1 cut(s) 171
FbaI TGATCA 1 cut(s) 141
Fnu4HI GCNGC 1 cut(s) 29
FokI GGATG 2 cut(s) 151, 211
Fsp4HI GCNGC 1 cut(s) 29
GluI GCNGC 1 cut(s) 29
HapII CCGG 2 cut(s) 12, 17
Hin1II CATG 1 cut(s) 175
HinfI GANTC 1 cut(s) 180
HpaII CCGG 2 cut(s) 12, 17
Hpy166II GTNNAC 1 cut(s) 244
Hpy188III TCNNGA 2 cut(s) 148, 223
Hpy8I GTNNAC 1 cut(s) 244
HpyCH4V TGCA 1 cut(s) 244
HpyF10VI GCNNNNNNNGC 1 cut(s) 168
HpyF3I CTNAG 1 cut(s) 184
Hsp92II CATG 1 cut(s) 175
KpnI GGTACC 1 cut(s) 23
Ksp22I TGATCA 1 cut(s) 141
Kzo9I GATC 2 cut(s) 141, 247
Lsp1109I GCAGC 1 cut(s) 15
LweI GCATC 1 cut(s) 216
MalI GATC 2 cut(s) 143, 249
MboI GATC 2 cut(s) 141, 247
MboII GAAGA 2 cut(s) 211, 263
MhlI GDGCHC 1 cut(s) 246
MluCI AATT 1 cut(s) 45
MnlI CCTC 1 cut(s) 170
MseI TTAA 1 cut(s) 155
MspI CCGG 2 cut(s) 12, 17
MspR9I CCNGG 2 cut(s) 83, 276
MvaI CCWGG 2 cut(s) 83, 276
MvnI CGCG 1 cut(s) 149
MwoI GCNNNNNNNGC 1 cut(s) 168
NdeII GATC 2 cut(s) 141, 247
NlaIII CATG 1 cut(s) 175
NlaIV GGNNCC 1 cut(s) 21
NruI TCGCGA 1 cut(s) 149
PfeI GAWTC 1 cut(s) 180
PfoI TCCNGGA 2 cut(s) 81, 274
PkrI GCNGC 1 cut(s) 30
Ple19I CGATCG 1 cut(s) 250
Psp6I CCWGG 2 cut(s) 81, 274
PspGI CCWGG 2 cut(s) 81, 274
PspN4I GGNNCC 1 cut(s) 21
PspPI GGNCC 1 cut(s) 14
PstNI CAGNNNCTG 2 cut(s) 229, 292
PvuI CGATCG 1 cut(s) 250
RruI TCGCGA 1 cut(s) 149
RsaI GTAC 2 cut(s) 21, 43
RsaNI GTAC 2 cut(s) 20, 42
Rsr2I CGGWCCG 1 cut(s) 14
RsrII CGGWCCG 1 cut(s) 14
SaqAI TTAA 1 cut(s) 155
SatI GCNGC 1 cut(s) 29
Sau3AI GATC 2 cut(s) 141, 247
Sau96I GGNCC 1 cut(s) 14
ScrFI CCNGG 2 cut(s) 83, 276
SduI GDGCHC 1 cut(s) 246
SetI ASST 3 cut(s) 64, 72, 190
SfaNI GCATC 1 cut(s) 216
SfcI CTRYAG 1 cut(s) 293
SinI GGWCC 1 cut(s) 14
Sse9I AATT 1 cut(s) 45
StyD4I CCNGG 2 cut(s) 81, 274
TasI AATT 1 cut(s) 45
TatI WGTACW 1 cut(s) 41
TfiI GAWTC 1 cut(s) 180
Tru1I TTAA 1 cut(s) 155
Tru9I TTAA 1 cut(s) 155
TscAI CASTG 2 cut(s) 30, 140
TseI GCWGC 1 cut(s) 28
TspRI CASTG 2 cut(s) 30, 140
VneI GTGCAC 1 cut(s) 242
VpaK11BI GGWCC 1 cut(s) 14
XcmI CCANNNNNNNNNTGG 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.