RLG00000036270

F-box kelch-repeat protein At3g06240-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
78249445 .. 78250667
1223 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036270

Sequence Viewer

Length: 960 bp
ATGGGCTCAAGTTCGGCTCTGGGCTCAATCCAAAGCCTACTCATCTCAAACTCAGAAGTCGGAACCAGGAGTGTTGGACTAGTTCTCAACCTTGATGAGTGTCTCAATCACATAAATATTGACGATGTTGGTGATGATGTTTTAGTTCTACCCACTCAACTCAAGCGTCGTAGATTTACCAAGTTCGTGTTTTACTGCAATGGGTTGTTGTTGTTGAAGTCGTATTATGTGTTTTATTTGTTAAACCCTGCAACCAAGGAAACCAAGATAGTACCAAACCCACCAGAGCTATATATGTGGTCTATTGAGCTGTATGGGTTTGGATTTGATCTGTCCAGTCTAGATTACAAGGTGGTTCAGGGCGAGTTCGTTGAATTTGATCTTGGGTTTAGTGTTTATTCATTGAAAACCGGGTCTTGGCGAGCGATTGAGAAGCGATATCCCTATGAAAGTTTACAACCTGGTATGCTGGGGAGACTGGTGAATGGGAGTATTCACTGGTTGGTTTGTAGAAACTACAATGATGTGCCATCCATGGTTCTCTTGTCTTTTGTTTTAGCAAACGAGGAAGTGCAAGAGATTCCACTACCGCCTGATTTCCTTGTTGATTTCAACATTGAAGATGAAACGTATTTTCTCGACGTGTTCCAGGAATGCCTGTGTGTGGGAAAGAATGATGCTTTTGAGTTTTGGGTCATGAAGGAATACGGAGTGATGAAATCTTGGACTAAAATAAGCATCTCCTTTCCATGTACTGAAGAGCTACATTCTGGTTTCATGAAAAAAAATCATCATCTGTTGCTGGATTTGCACCAACACCGTCTGGTCATGTACAATTTTGATGATGGAAGCTCTCGAAATCTTTCAGTTGCGAAACGTTCCAAAGTTGATTTTGTTGGGTGCTACTTGGAGAGCCTCGTCTCGCCTAATCACTATCATATGACTGATGGAGAACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

320

Amino Acids

36.63

Weight (kDa)

5.2

Isoelectric Point (pI)

50.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 58 - 251 5.5e-13 F-box associated beta propeller domain
FBA_1 PF07734 61 - 308 1.2e-20 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 590
AclI AACGTT 1 cut(s) 877
AcsI RAATTY 1 cut(s) 374
AcuI CTGAAG 1 cut(s) 777
AfaI GTAC 3 cut(s) 273, 754, 833
AfiI CCNNNNNNNGG 2 cut(s) 417, 664
AflIII ACRYGT 1 cut(s) 642
AgsI TTSAA 5 cut(s) 217, 374, 406, 613, 620
AhlI ACTAGT 1 cut(s) 79
AjiI CACGTC 1 cut(s) 643
AjnI CCWGG 3 cut(s) 65, 460, 648
AjuI GAANNNNNNNTTGG 2 cut(s) 366, 398
AluBI AGCT 4 cut(s) 289, 310, 763, 852
AluI AGCT 4 cut(s) 289, 310, 763, 852
Alw26I GTCTC 3 cut(s) 107, 469, 925
ApoI RAATTY 1 cut(s) 374
Asp700I GAANNNNTTC 1 cut(s) 862
AsuC2I CCSGG 1 cut(s) 412
AsuHPI GGTGA 2 cut(s) 143, 493
BanII GRGCYC 2 cut(s) 8, 26
BccI CCATC 3 cut(s) 538, 839, 941
BciT130I CCWGG 3 cut(s) 67, 462, 650
BcnI CCSGG 1 cut(s) 412
BcoDI GTCTC 3 cut(s) 107, 469, 925
BcuI ACTAGT 1 cut(s) 79
BfaI CTAG 2 cut(s) 80, 341
Bme1390I CCNGG 4 cut(s) 67, 412, 462, 650
BmgBI CACGTC 1 cut(s) 643
BmiI GGNNCC 1 cut(s) 64
BmrFI CCNGG 4 cut(s) 67, 412, 462, 650
BmsI GCATC 2 cut(s) 667, 747
BpuEI CTTGAG 1 cut(s) 146
BpuMI CCSGG 1 cut(s) 412
BsaJI CCNNGG 2 cut(s) 255, 534
Bsc4I CCNNNNNNNGG 2 cut(s) 417, 664
Bse1I ACTGG 3 cut(s) 336, 483, 503
Bse3DI GCAATG 1 cut(s) 205
BseBI CCWGG 3 cut(s) 67, 462, 650
BseDI CCNNGG 2 cut(s) 255, 534
BseGI GGATG 1 cut(s) 530
BseLI CCNNNNNNNGG 2 cut(s) 417, 664
BseMI GCAATG 1 cut(s) 205
BseMII CTCAG 1 cut(s) 66
BseNI ACTGG 3 cut(s) 336, 483, 503
BseYI CCCAGC 1 cut(s) 469
BsiSI CCGG 1 cut(s) 411
BslI CCNNNNNNNGG 2 cut(s) 417, 664
BsmAI GTCTC 3 cut(s) 107, 469, 925
BsmBI CGTCTC 1 cut(s) 925
BsmI GAATGC 1 cut(s) 659
Bsp1286I GDGCHC 2 cut(s) 8, 26
Bsp1407I TGTACA 1 cut(s) 831
Bsp143I GATC 2 cut(s) 328, 379
Bsp19I CCATGG 1 cut(s) 534
BspACI CCGC 1 cut(s) 590
BspCNI CTCAG 1 cut(s) 65
BspHI TCATGA 2 cut(s) 696, 777
BspLI GGNNCC 1 cut(s) 64
BspQI GCTCTTC 1 cut(s) 753
BsrDI GCAATG 1 cut(s) 205
BsrGI TGTACA 1 cut(s) 831
BsrI ACTGG 3 cut(s) 336, 483, 503
BssECI CCNNGG 2 cut(s) 255, 534
BssMI GATC 2 cut(s) 328, 379
BssT1I CCWWGG 2 cut(s) 255, 534
Bst2UI CCWGG 3 cut(s) 67, 462, 650
Bst4CI ACNGT 1 cut(s) 821
Bst6I CTCTTC 1 cut(s) 753
BstAUI TGTACA 1 cut(s) 831
BstC8I GCNNGC 1 cut(s) 423
BstDEI CTNAG 1 cut(s) 52
BstDSI CCRYGG 1 cut(s) 534
BstF5I GGATG 1 cut(s) 530
BstKTI GATC 2 cut(s) 331, 382
BstMAI GTCTC 3 cut(s) 107, 469, 925
BstMBI GATC 2 cut(s) 328, 379
BstMWI GCNNNNNNNGC 1 cut(s) 808
BstNI CCWGG 3 cut(s) 67, 462, 650
BstSCI CCNGG 4 cut(s) 65, 410, 460, 648
BtgI CCRYGG 1 cut(s) 534
BtrI CACGTC 1 cut(s) 643
BtsCI GGATG 1 cut(s) 530
BtsIMutI CAGTG 1 cut(s) 496
Cac8I GCNNGC 1 cut(s) 423
CciI TCATGA 2 cut(s) 696, 777
CseI GACGC 1 cut(s) 155
CsiI ACCWGGT 1 cut(s) 460
Csp6I GTAC 3 cut(s) 272, 753, 832
CviAII CATG 5 cut(s) 535, 697, 750, 778, 829
CviJI RGCY 9 cut(s) 6, 17, 24, 36, 289, 310, 763, 852, 915
CviKI_1 RGCY 9 cut(s) 6, 17, 24, 36, 289, 310, 763, 852, 915
CviQI GTAC 3 cut(s) 272, 753, 832
DdeI CTNAG 1 cut(s) 52
DpnI GATC 2 cut(s) 330, 381
DpnII GATC 2 cut(s) 328, 379
Eam1104I CTCTTC 1 cut(s) 753
EarI CTCTTC 1 cut(s) 753
Eco130I CCWWGG 2 cut(s) 255, 534
Eco24I GRGCYC 2 cut(s) 8, 26
Eco32I GATATC 1 cut(s) 440
Eco57I CTGAAG 1 cut(s) 777
EcoRII CCWGG 3 cut(s) 65, 460, 648
EcoRV GATATC 1 cut(s) 440
EcoT14I CCWWGG 2 cut(s) 255, 534
EcoT38I GRGCYC 2 cut(s) 8, 26
ErhI CCWWGG 2 cut(s) 255, 534
Esp3I CGTCTC 1 cut(s) 925
FaeI CATG 5 cut(s) 538, 700, 753, 781, 832
FatI CATG 5 cut(s) 534, 696, 749, 777, 828
FauNDI CATATG 1 cut(s) 939
FokI GGATG 1 cut(s) 517
FriOI GRGCYC 2 cut(s) 8, 26
FspBI CTAG 2 cut(s) 80, 341
GsaI CCCAGC 1 cut(s) 473
HapII CCGG 1 cut(s) 411
HgaI GACGC 1 cut(s) 155
Hin1II CATG 5 cut(s) 538, 700, 753, 781, 832
HinfI GANTC 1 cut(s) 580
HpaII CCGG 1 cut(s) 411
HphI GGTGA 2 cut(s) 143, 493
Hpy166II GTNNAC 1 cut(s) 455
Hpy188I TCNGA 2 cut(s) 55, 62
Hpy188III TCNNGA 5 cut(s) 341, 638, 697, 778, 855
Hpy8I GTNNAC 1 cut(s) 455
Hpy99I CGWCG 2 cut(s) 171, 644
HpyAV CCTTC 1 cut(s) 694
HpyCH4III ACNGT 1 cut(s) 821
HpyCH4IV ACGT 3 cut(s) 629, 642, 877
HpyCH4V TGCA 4 cut(s) 198, 251, 574, 811
HpyF10VI GCNNNNNNNGC 1 cut(s) 808
HpyF3I CTNAG 1 cut(s) 52
HpySE526I ACGT 3 cut(s) 629, 642, 877
Hsp92II CATG 5 cut(s) 538, 700, 753, 781, 832
Kzo9I GATC 2 cut(s) 328, 379
LguI GCTCTTC 1 cut(s) 753
LweI GCATC 2 cut(s) 667, 747
MabI ACCWGGT 1 cut(s) 460
MaeI CTAG 2 cut(s) 80, 341
MaeII ACGT 3 cut(s) 629, 642, 877
MalI GATC 2 cut(s) 330, 381
MboI GATC 2 cut(s) 328, 379
MboII GAAGA 2 cut(s) 632, 770
MhlI GDGCHC 2 cut(s) 8, 26
MluCI AATT 2 cut(s) 374, 835
MmeI TCCRAC 2 cut(s) 40, 55
MnlI CCTC 2 cut(s) 559, 926
MroXI GAANNNNTTC 1 cut(s) 862
MseI TTAA 2 cut(s) 242, 958
MspI CCGG 1 cut(s) 411
MspR9I CCNGG 4 cut(s) 67, 412, 462, 650
Mva1269I GAATGC 1 cut(s) 659
MvaI CCWGG 3 cut(s) 67, 462, 650
MwoI GCNNNNNNNGC 1 cut(s) 808
NciI CCSGG 1 cut(s) 412
NcoI CCATGG 1 cut(s) 534
NdeI CATATG 1 cut(s) 939
NdeII GATC 2 cut(s) 328, 379
NlaIII CATG 5 cut(s) 538, 700, 753, 781, 832
NlaIV GGNNCC 1 cut(s) 64
PagI TCATGA 2 cut(s) 696, 777
PciSI GCTCTTC 1 cut(s) 753
PctI GAATGC 1 cut(s) 659
PdmI GAANNNNTTC 1 cut(s) 862
PfeI GAWTC 1 cut(s) 580
PfoI TCCNGGA 1 cut(s) 648
Psp1406I AACGTT 1 cut(s) 877
Psp6I CCWGG 3 cut(s) 65, 460, 648
PspFI CCCAGC 1 cut(s) 469
PspGI CCWGG 3 cut(s) 65, 460, 648
PspN4I GGNNCC 1 cut(s) 64
RsaI GTAC 3 cut(s) 273, 754, 833
RsaNI GTAC 3 cut(s) 272, 753, 832
SapI GCTCTTC 1 cut(s) 753
SaqAI TTAA 2 cut(s) 242, 958
Sau3AI GATC 2 cut(s) 328, 379
ScrFI CCNGG 4 cut(s) 67, 412, 462, 650
SduI GDGCHC 2 cut(s) 8, 26
SexAI ACCWGGT 1 cut(s) 460
SfaNI GCATC 2 cut(s) 667, 747
SmlI CTYRAG 2 cut(s) 7, 161
SmoI CTYRAG 2 cut(s) 7, 161
SpeI ACTAGT 1 cut(s) 79
Sse9I AATT 2 cut(s) 374, 835
SsiI CCGC 1 cut(s) 590
SspI AATATT 1 cut(s) 118
SspMI CTAG 2 cut(s) 80, 341
StyD4I CCNGG 4 cut(s) 65, 410, 460, 648
StyI CCWWGG 2 cut(s) 255, 534
TaaI ACNGT 1 cut(s) 821
TaiI ACGT 3 cut(s) 632, 645, 880
TaqI TCGA 2 cut(s) 639, 856
TasI AATT 2 cut(s) 374, 835
TatI WGTACW 2 cut(s) 752, 831
TfiI GAWTC 1 cut(s) 580
Tru1I TTAA 2 cut(s) 242, 958
Tru9I TTAA 2 cut(s) 242, 958
TscAI CASTG 1 cut(s) 503
TspDTI ATGAA 7 cut(s) 390, 462, 639, 713, 731, 766, 794
TspGWI ACGGA 1 cut(s) 723
TspRI CASTG 1 cut(s) 503
XapI RAATTY 1 cut(s) 374
XbaI TCTAGA 1 cut(s) 340
XmnI GAANNNNTTC 1 cut(s) 862
XspI CTAG 2 cut(s) 80, 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.