Rmu_sc0009422.1_g000009

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009422.1
OG0000111
Physical Location & Seq
Forward (+)
18116 .. 19091
976 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009422.1_g000009.1.cds

Sequence Viewer

Length: 888 bp
atggaggaccataattgccagttgacgggaaaacaaaacgatcttccaccggagatcatgcatgagatcctttcaaggctaccagtgaagtcattgtgccgcttcaagtgtgtatcaaacccatggcggtctctaatctccaatcccaaattcattgcaaagcactccaaagccattgagaataaggatgtgttcttccaaagacgaagactcgtatttactgaccgggaacatcattacctttactctttggaccttgaccaatttctcaaccagaacctcgcagttctaaagaatcggggacgatgtcattggtttccctttacccaatcttgcaatagcttgttattgtcccagtcgtattctgggtaccatttgattaaccctgtagccaaggaatcaaagaaactaccagagacaccaaagcggaaacgaccatggaagccctatttttgggagttatatggtctgggatttgattactccactaatgaatacaaggtggttaacggtaagttttttgctacttatgggattgtatttagtgtgtatacattggaaactgattcttggcgacagattaagtgcctctttccctacaagccgataagttatgatgggatcgtgctgaatggaggtgttcattggttattggggacagtcgcagatgactcgttgctgatcctatcttcccttttagcagaagaggaagtcagagaaattccactaccgttcattggtactcaatcaattgaactaggggtctttagagattggctatgtataacattgatcgagaaagcaactaatgagttttggataatgaaggaatatggagtgagagagtcttggactaaaatgcgagtctccattccatatcaccaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

295

Amino Acids

34.67

Weight (kDa)

8.83

Isoelectric Point (pI)

47.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 369
AccB1I GGYRCC 1 cut(s) 369
AccI GTMKAC 1 cut(s) 551
AciI CCGC 3 cut(s) 100, 127, 427
AclWI GGATC 3 cut(s) 61, 629, 676
AcsI RAATTY 2 cut(s) 149, 720
AfaI GTAC 2 cut(s) 371, 742
AfiI CCNNNNNNNGG 3 cut(s) 25, 453, 737
AgsI TTSAA 3 cut(s) 75, 106, 755
AjuI GAANNNNNNNTTGG 2 cut(s) 134, 166
AluBI AGCT 1 cut(s) 342
AluI AGCT 1 cut(s) 342
Alw26I GTCTC 3 cut(s) 135, 410, 871
AlwI GGATC 3 cut(s) 61, 629, 676
ApoI RAATTY 2 cut(s) 149, 720
Asp718I GGTACC 1 cut(s) 369
AspS9I GGNCC 2 cut(s) 7, 253
AsuC2I CCSGG 1 cut(s) 227
AsuHPI GGTGA 1 cut(s) 872
AvaII GGWCC 2 cut(s) 7, 253
BanI GGYRCC 1 cut(s) 369
BbsI GAAGAC 1 cut(s) 214
BccI CCATC 1 cut(s) 611
BcgI CGANNNNNNTGC 2 cut(s) 654, 688
BcnI CCSGG 1 cut(s) 227
BcoDI GTCTC 3 cut(s) 135, 410, 871
BfaI CTAG 1 cut(s) 758
BfmI CTRYAG 1 cut(s) 387
BisI GCNGC 1 cut(s) 100
BlsI GCNGC 1 cut(s) 101
Bme1390I CCNGG 1 cut(s) 227
Bme18I GGWCC 2 cut(s) 7, 253
BmgT120I GGNCC 2 cut(s) 7, 253
BmiI GGNNCC 1 cut(s) 371
BmrFI CCNGG 1 cut(s) 227
BmrI ACTGGG 1 cut(s) 349
BmuI ACTGGG 1 cut(s) 349
BpiI GAAGAC 1 cut(s) 214
BpuMI CCSGG 1 cut(s) 227
BsaI GGTCTC 1 cut(s) 135
BsaJI CCNNGG 3 cut(s) 122, 393, 437
BsaWI WCCGGW 1 cut(s) 49
Bsc4I CCNNNNNNNGG 3 cut(s) 25, 453, 737
Bse1I ACTGG 3 cut(s) 19, 83, 355
Bse3DI GCAATG 1 cut(s) 153
BseDI CCNNGG 3 cut(s) 122, 393, 437
BseGI GGATG 1 cut(s) 193
BseLI CCNNNNNNNGG 3 cut(s) 25, 453, 737
BseMI GCAATG 1 cut(s) 153
BseNI ACTGG 3 cut(s) 19, 83, 355
BshNI GGYRCC 1 cut(s) 369
BsiSI CCGG 2 cut(s) 50, 226
BslFI GGGAC 3 cut(s) 315, 337, 670
BslI CCNNNNNNNGG 3 cut(s) 25, 453, 737
BsmAI GTCTC 3 cut(s) 135, 410, 871
BsmFI GGGAC 3 cut(s) 315, 337, 670
Bso31I GGTCTC 1 cut(s) 135
Bsp143I GATC 6 cut(s) 40, 54, 66, 621, 681, 792
Bsp19I CCATGG 2 cut(s) 122, 437
BspACI CCGC 3 cut(s) 100, 127, 427
BspLI GGNNCC 1 cut(s) 371
BspPI GGATC 3 cut(s) 61, 629, 676
BspT107I GGYRCC 1 cut(s) 369
BspTNI GGTCTC 1 cut(s) 135
BsrDI GCAATG 1 cut(s) 153
BsrI ACTGG 3 cut(s) 19, 83, 355
BssECI CCNNGG 3 cut(s) 122, 393, 437
BssMI GATC 6 cut(s) 40, 54, 66, 621, 681, 792
BssNAI GTATAC 1 cut(s) 552
BssT1I CCWWGG 3 cut(s) 122, 393, 437
Bst1107I GTATAC 1 cut(s) 552
Bst4CI ACNGT 3 cut(s) 512, 661, 732
Bst6I CTCTTC 1 cut(s) 699
BstDSI CCRYGG 2 cut(s) 122, 437
BstF5I GGATG 1 cut(s) 193
BstKTI GATC 6 cut(s) 43, 57, 69, 624, 684, 795
BstMAI GTCTC 3 cut(s) 135, 410, 871
BstMBI GATC 6 cut(s) 40, 54, 66, 621, 681, 792
BstSCI CCNGG 1 cut(s) 225
BstSFI CTRYAG 1 cut(s) 387
BstV2I GAAGAC 1 cut(s) 214
BstX2I RGATCY 1 cut(s) 66
BstYI RGATCY 1 cut(s) 66
BstZ17I GTATAC 1 cut(s) 552
BtgI CCRYGG 2 cut(s) 122, 437
BtsCI GGATG 1 cut(s) 193
BtsIMutI CAGTG 1 cut(s) 90
Cfr13I GGNCC 2 cut(s) 7, 253
Csp6I GTAC 2 cut(s) 370, 741
CviAII CATG 4 cut(s) 58, 62, 123, 438
CviJI RGCY 7 cut(s) 79, 173, 342, 392, 445, 604, 778
CviKI_1 RGCY 7 cut(s) 79, 173, 342, 392, 445, 604, 778
CviQI GTAC 2 cut(s) 370, 741
DpnI GATC 6 cut(s) 42, 56, 68, 623, 683, 794
DpnII GATC 6 cut(s) 40, 54, 66, 621, 681, 792
Eam1104I CTCTTC 1 cut(s) 699
EarI CTCTTC 1 cut(s) 699
Eco130I CCWWGG 3 cut(s) 122, 393, 437
Eco31I GGTCTC 1 cut(s) 135
Eco47I GGWCC 2 cut(s) 7, 253
EcoT14I CCWWGG 3 cut(s) 122, 393, 437
EcoT22I ATGCAT 1 cut(s) 63
ErhI CCWWGG 3 cut(s) 122, 393, 437
FaeI CATG 4 cut(s) 61, 65, 126, 441
FalI AAGNNNNNCTT 2 cut(s) 575, 607
FaqI GGGAC 3 cut(s) 315, 337, 670
FatI CATG 4 cut(s) 57, 61, 122, 437
FblI GTMKAC 1 cut(s) 551
Fnu4HI GCNGC 1 cut(s) 100
FokI GGATG 1 cut(s) 200
Fsp4HI GCNGC 1 cut(s) 100
FspBI CTAG 1 cut(s) 758
GluI GCNGC 1 cut(s) 100
HapII CCGG 2 cut(s) 50, 226
Hin1II CATG 4 cut(s) 61, 65, 126, 441
HincII GTYRAC 2 cut(s) 24, 508
HindII GTYRAC 2 cut(s) 24, 508
HinfI GANTC 7 cut(s) 210, 295, 398, 566, 671, 845, 864
HpaI GTTAAC 1 cut(s) 508
HpaII CCGG 2 cut(s) 50, 226
HphI GGTGA 1 cut(s) 872
Hpy166II GTNNAC 3 cut(s) 24, 508, 552
Hpy188I TCNGA 1 cut(s) 716
Hpy188III TCNNGA 1 cut(s) 796
Hpy8I GTNNAC 3 cut(s) 24, 508, 552
HpyAV CCTTC 1 cut(s) 820
HpyCH4III ACNGT 3 cut(s) 512, 661, 732
HpyCH4V TGCA 3 cut(s) 61, 158, 336
Hsp92II CATG 4 cut(s) 61, 65, 126, 441
KpnI GGTACC 1 cut(s) 373
KspAI GTTAAC 1 cut(s) 508
Kzo9I GATC 6 cut(s) 40, 54, 66, 621, 681, 792
MaeI CTAG 1 cut(s) 758
MalI GATC 6 cut(s) 42, 56, 68, 623, 683, 794
MboI GATC 6 cut(s) 40, 54, 66, 621, 681, 792
MboII GAAGA 5 cut(s) 35, 187, 219, 681, 716
MfeI CAATTG 1 cut(s) 750
MflI RGATCY 1 cut(s) 66
MluCI AATT 5 cut(s) 13, 149, 263, 720, 750
MlyI GAGTC 4 cut(s) 204, 665, 854, 873
MnlI CCTC 4 cut(s) 290, 599, 629, 700
Mph1103I ATGCAT 1 cut(s) 63
MseI TTAA 3 cut(s) 381, 507, 582
MspI CCGG 2 cut(s) 50, 226
MspR9I CCNGG 1 cut(s) 227
MunI CAATTG 1 cut(s) 750
NciI CCSGG 1 cut(s) 227
NcoI CCATGG 2 cut(s) 122, 437
NdeII GATC 6 cut(s) 40, 54, 66, 621, 681, 792
NlaIII CATG 4 cut(s) 61, 65, 126, 441
NlaIV GGNNCC 1 cut(s) 371
NsiI ATGCAT 1 cut(s) 63
PfeI GAWTC 3 cut(s) 295, 398, 566
PflFI GACNNNGTC 1 cut(s) 306
PkrI GCNGC 1 cut(s) 101
PleI GAGTC 4 cut(s) 204, 665, 853, 872
PpsI GAGTC 4 cut(s) 204, 665, 853, 872
PspN4I GGNNCC 1 cut(s) 371
PspPI GGNCC 2 cut(s) 7, 253
PsuI RGATCY 1 cut(s) 66
PsyI GACNNNGTC 1 cut(s) 306
RsaI GTAC 2 cut(s) 371, 742
RsaNI GTAC 2 cut(s) 370, 741
SaqAI TTAA 3 cut(s) 381, 507, 582
SatI GCNGC 1 cut(s) 100
Sau3AI GATC 6 cut(s) 40, 54, 66, 621, 681, 792
Sau96I GGNCC 2 cut(s) 7, 253
SchI GAGTC 4 cut(s) 204, 665, 854, 873
ScrFI CCNGG 1 cut(s) 227
SetI ASST 6 cut(s) 243, 258, 282, 344, 504, 640
SfcI CTRYAG 1 cut(s) 387
SinI GGWCC 2 cut(s) 7, 253
Sse9I AATT 5 cut(s) 13, 149, 263, 720, 750
SsiI CCGC 3 cut(s) 100, 127, 427
SspMI CTAG 1 cut(s) 758
StyD4I CCNGG 1 cut(s) 225
StyI CCWWGG 3 cut(s) 122, 393, 437
TaaI ACNGT 3 cut(s) 512, 661, 732
TaqI TCGA 1 cut(s) 795
TasI AATT 5 cut(s) 13, 149, 263, 720, 750
TauI GCSGC 1 cut(s) 102
TfiI GAWTC 3 cut(s) 295, 398, 566
Tru1I TTAA 3 cut(s) 381, 507, 582
Tru9I TTAA 3 cut(s) 381, 507, 582
TscAI CASTG 1 cut(s) 90
TspDTI ATGAA 5 cut(s) 142, 507, 632, 724, 839
TspRI CASTG 1 cut(s) 90
Tth111I GACNNNGTC 1 cut(s) 306
VpaK11BI GGWCC 2 cut(s) 7, 253
XapI RAATTY 2 cut(s) 149, 720
XcmI CCANNNNNNNNNTGG 1 cut(s) 362
XmiI GTMKAC 1 cut(s) 551
XspI CTAG 1 cut(s) 758
Zsp2I ATGCAT 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.