FvH4_5g39231

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000111
Physical Location & Seq
Forward (+)
28948401 .. 28948940
540 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g39231.t1

Sequence Viewer

Length: 540 bp
ATGGACCTAGATGAGTTTCTCCATAACCATGCAGCTCATGATGATTTAGTAACAGCGACCGAGCTCGATTTTGTTCGCCAAGAATTTCATCCAGAGCAACAAGATAGACCCCCTTGGCTTCCTTTCATCTACTCCTGTAATAACTTCTTGTTGTGCCGCTTCTGCGGTTCTAAGAATGGGACTTATTTGGTTAATCCTGCAACCAGGGAGCTGAAGAAAGTGCCAGAGACACCGACGTGGAGACCTAGCCCTGCTCTCAGGGATCCCAAGATTGTTGGCTTGAGCCCATGTGGAATTGGATTTGATTACTCGACCAATGAGTACAAGGTGGTTGACGGGCAGATCTATACTGACATGACAATCGTATTCAGTGTCTATAGATTGAAAACTGATTCTTGGCGACAGATAGAGTACCACATTGATGAATACAATCCTGATTTTCATCATGGGATTTTTTTAAATGGAGCTCTTCATTGGTCGGCGATAGAAGCTTCTAGAGTTAGCGATAGACCAGCGACTCCAACTTTTCTATTAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

180

Amino Acids

20.68

Weight (kDa)

5.39

Isoelectric Point (pI)

35.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 37 - 168 6.7e-15 F-box associated beta propeller domain
FBA_3 PF08268 37 - 164 1.7e-08 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 157, 165
AclWI GGATC 2 cut(s) 257, 270
AcsI RAATTY 1 cut(s) 83
AcuI CTGAAG 1 cut(s) 233
AfaI GTAC 2 cut(s) 323, 413
AgsI TTSAA 1 cut(s) 385
AjiI CACGTC 1 cut(s) 237
AjnI CCWGG 1 cut(s) 203
AleI CACNNNNGTG 1 cut(s) 235
AluBI AGCT 5 cut(s) 35, 64, 211, 467, 491
AluI AGCT 5 cut(s) 35, 64, 211, 467, 491
Alw21I GWGCWC 2 cut(s) 66, 469
Alw26I GTCTC 2 cut(s) 221, 235
AlwI GGATC 2 cut(s) 257, 270
ApeKI GCWGC 1 cut(s) 32
ApoI RAATTY 1 cut(s) 83
AspS9I GGNCC 1 cut(s) 4
AvaII GGWCC 1 cut(s) 4
BamHI GGATCC 1 cut(s) 262
BanII GRGCYC 3 cut(s) 66, 287, 469
Bbv12I GWGCWC 2 cut(s) 66, 469
BbvI GCAGC 1 cut(s) 44
BciT130I CCWGG 1 cut(s) 205
BcoDI GTCTC 2 cut(s) 221, 235
BfaI CTAG 3 cut(s) 8, 246, 495
BfmI CTRYAG 1 cut(s) 376
BglII AGATCT 1 cut(s) 342
BisI GCNGC 2 cut(s) 33, 157
BlsI GCNGC 2 cut(s) 34, 158
Bme1390I CCNGG 1 cut(s) 205
Bme18I GGWCC 1 cut(s) 4
BmgBI CACGTC 1 cut(s) 237
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 264
BmrFI CCNGG 1 cut(s) 205
BpuEI CTTGAG 1 cut(s) 301
BsaBI GATNNNNATC 1 cut(s) 441
BsaI GGTCTC 1 cut(s) 235
BsaJI CCNNGG 2 cut(s) 113, 204
Bse8I GATNNNNATC 1 cut(s) 441
BseBI CCWGG 1 cut(s) 205
BseDI CCNNGG 2 cut(s) 113, 204
BseGI GGATG 1 cut(s) 88
BseJI GATNNNNATC 1 cut(s) 441
BseMII CTCAG 1 cut(s) 271
BseXI GCAGC 1 cut(s) 44
Bsh1285I CGRYCG 1 cut(s) 60
BsiEI CGRYCG 1 cut(s) 60
BsiHKAI GWGCWC 2 cut(s) 66, 469
BslFI GGGAC 1 cut(s) 193
BsmAI GTCTC 2 cut(s) 221, 235
BsmFI GGGAC 1 cut(s) 193
Bso31I GGTCTC 1 cut(s) 235
Bsp1286I GDGCHC 3 cut(s) 66, 287, 469
Bsp143I GATC 2 cut(s) 262, 342
BspACI CCGC 2 cut(s) 157, 165
BspCNI CTCAG 1 cut(s) 270
BspHI TCATGA 1 cut(s) 37
BspLI GGNNCC 1 cut(s) 264
BspPI GGATC 2 cut(s) 257, 270
BspQI GCTCTTC 1 cut(s) 474
BspTNI GGTCTC 1 cut(s) 235
BssECI CCNNGG 2 cut(s) 113, 204
BssMI GATC 2 cut(s) 262, 342
BssT1I CCWWGG 1 cut(s) 113
Bst2UI CCWGG 1 cut(s) 205
Bst6I CTCTTC 1 cut(s) 474
BstDEI CTNAG 2 cut(s) 171, 257
BstF5I GGATG 1 cut(s) 88
BstKTI GATC 2 cut(s) 265, 345
BstMAI GTCTC 2 cut(s) 221, 235
BstMBI GATC 2 cut(s) 262, 342
BstMCI CGRYCG 1 cut(s) 60
BstMWI GCNNNNNNNGC 2 cut(s) 162, 488
BstNI CCWGG 1 cut(s) 205
BstSCI CCNGG 1 cut(s) 203
BstSFI CTRYAG 1 cut(s) 376
BstV1I GCAGC 1 cut(s) 44
BstX2I RGATCY 2 cut(s) 262, 342
BstYI RGATCY 2 cut(s) 262, 342
BtrI CACGTC 1 cut(s) 237
BtsCI GGATG 1 cut(s) 88
BtsIMutI CAGTG 1 cut(s) 376
CciI TCATGA 1 cut(s) 37
Cfr13I GGNCC 1 cut(s) 4
Csp6I GTAC 2 cut(s) 322, 412
CviAII CATG 5 cut(s) 29, 38, 288, 355, 446
CviJI RGCY 9 cut(s) 35, 64, 118, 211, 249, 279, 285, 467, 491
CviKI_1 RGCY 9 cut(s) 35, 64, 118, 211, 249, 279, 285, 467, 491
CviQI GTAC 2 cut(s) 322, 412
DdeI CTNAG 2 cut(s) 171, 257
DpnI GATC 2 cut(s) 264, 344
DpnII GATC 2 cut(s) 262, 342
DraI TTTAAA 1 cut(s) 459
Eam1104I CTCTTC 1 cut(s) 474
EarI CTCTTC 1 cut(s) 474
Ecl136II GAGCTC 2 cut(s) 64, 467
Eco130I CCWWGG 1 cut(s) 113
Eco24I GRGCYC 3 cut(s) 66, 287, 469
Eco31I GGTCTC 1 cut(s) 235
Eco47I GGWCC 1 cut(s) 4
Eco53kI GAGCTC 2 cut(s) 64, 467
Eco57I CTGAAG 1 cut(s) 233
EcoICRI GAGCTC 2 cut(s) 64, 467
EcoRII CCWGG 1 cut(s) 203
EcoT14I CCWWGG 1 cut(s) 113
EcoT38I GRGCYC 3 cut(s) 66, 287, 469
ErhI CCWWGG 1 cut(s) 113
FaeI CATG 5 cut(s) 32, 41, 291, 358, 449
FaiI YATR 9 cut(s) 24, 30, 39, 289, 348, 356, 378, 447, 538
FaqI GGGAC 1 cut(s) 193
FatI CATG 5 cut(s) 28, 37, 287, 354, 445
Fnu4HI GCNGC 2 cut(s) 33, 157
FokI GGATG 1 cut(s) 75
FriOI GRGCYC 3 cut(s) 66, 287, 469
Fsp4HI GCNGC 2 cut(s) 33, 157
FspBI CTAG 3 cut(s) 8, 246, 495
GluI GCNGC 2 cut(s) 33, 157
Hin1II CATG 5 cut(s) 32, 41, 291, 358, 449
HincII GTYRAC 1 cut(s) 334
HindII GTYRAC 1 cut(s) 334
HindIII AAGCTT 1 cut(s) 489
HinfI GANTC 2 cut(s) 392, 517
Hpy166II GTNNAC 1 cut(s) 334
Hpy188III TCNNGA 4 cut(s) 38, 92, 434, 495
Hpy8I GTNNAC 1 cut(s) 334
Hpy99I CGWCG 1 cut(s) 238
HpyCH4IV ACGT 1 cut(s) 236
HpyCH4V TGCA 2 cut(s) 32, 200
HpyF10VI GCNNNNNNNGC 2 cut(s) 162, 488
HpyF3I CTNAG 2 cut(s) 171, 257
HpySE526I ACGT 1 cut(s) 236
Hsp92II CATG 5 cut(s) 32, 41, 291, 358, 449
Kzo9I GATC 2 cut(s) 262, 342
LguI GCTCTTC 1 cut(s) 474
LmnI GCTCC 2 cut(s) 208, 464
Lsp1109I GCAGC 1 cut(s) 44
MaeI CTAG 3 cut(s) 8, 246, 495
MaeII ACGT 1 cut(s) 236
MaeIII GTNAC 1 cut(s) 49
MalI GATC 2 cut(s) 264, 344
MboI GATC 2 cut(s) 262, 342
MboII GAAGA 2 cut(s) 226, 461
MflI RGATCY 2 cut(s) 262, 342
MhlI GDGCHC 3 cut(s) 66, 287, 469
MluCI AATT 2 cut(s) 83, 294
MlyI GAGTC 1 cut(s) 511
MseI TTAA 2 cut(s) 192, 458
MslI CAYNNNNRTG 3 cut(s) 27, 235, 420
MspR9I CCNGG 1 cut(s) 205
MvaI CCWGG 1 cut(s) 205
MwoI GCNNNNNNNGC 2 cut(s) 162, 488
NdeII GATC 2 cut(s) 262, 342
NlaIII CATG 5 cut(s) 32, 41, 291, 358, 449
NlaIV GGNNCC 1 cut(s) 264
OliI CACNNNNGTG 1 cut(s) 235
PagI TCATGA 1 cut(s) 37
PciSI GCTCTTC 1 cut(s) 474
PfeI GAWTC 1 cut(s) 392
PkrI GCNGC 2 cut(s) 34, 158
PleI GAGTC 1 cut(s) 511
PpsI GAGTC 1 cut(s) 511
Psp124BI GAGCTC 2 cut(s) 66, 469
Psp6I CCWGG 1 cut(s) 203
PspGI CCWGG 1 cut(s) 203
PspN4I GGNNCC 1 cut(s) 264
PspPI GGNCC 1 cut(s) 4
PsuI RGATCY 2 cut(s) 262, 342
RsaI GTAC 2 cut(s) 323, 413
RsaNI GTAC 2 cut(s) 322, 412
RseI CAYNNNNRTG 3 cut(s) 27, 235, 420
SacI GAGCTC 2 cut(s) 66, 469
SapI GCTCTTC 1 cut(s) 474
SaqAI TTAA 2 cut(s) 192, 458
SatI GCNGC 2 cut(s) 33, 157
Sau3AI GATC 2 cut(s) 262, 342
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 511
ScrFI CCNGG 1 cut(s) 205
SduI GDGCHC 3 cut(s) 66, 287, 469
SetI ASST 9 cut(s) 9, 37, 66, 213, 239, 247, 330, 469, 493
SfcI CTRYAG 1 cut(s) 376
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 3 cut(s) 27, 235, 420
SmlI CTYRAG 1 cut(s) 280
SmoI CTYRAG 1 cut(s) 280
Sse9I AATT 2 cut(s) 83, 294
SsiI CCGC 2 cut(s) 157, 165
SspMI CTAG 3 cut(s) 8, 246, 495
SstI GAGCTC 2 cut(s) 66, 469
StyD4I CCNGG 1 cut(s) 203
StyI CCWWGG 1 cut(s) 113
TaiI ACGT 1 cut(s) 239
TaqI TCGA 2 cut(s) 66, 311
TaqII GACCGA 1 cut(s) 74
TasI AATT 2 cut(s) 83, 294
TatI WGTACW 1 cut(s) 321
TauI GCSGC 1 cut(s) 159
TfiI GAWTC 1 cut(s) 392
Tru1I TTAA 2 cut(s) 192, 458
Tru9I TTAA 2 cut(s) 192, 458
TscAI CASTG 1 cut(s) 376
TseI GCWGC 1 cut(s) 32
TspDTI ATGAA 5 cut(s) 77, 115, 431, 438, 461
TspRI CASTG 1 cut(s) 376
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 1 cut(s) 83
XbaI TCTAGA 1 cut(s) 494
XspI CTAG 3 cut(s) 8, 246, 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.