Rw7G034680

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000111
Physical Location & Seq
Reverse (-)
51515429 .. 51516127
699 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G034680.1

Sequence Viewer

Length: 699 bp
ATGGCGGACCAACACAAGGCGGTCTGCCGTAGCTTGCCGTCGGAGATCATACGCGAGATTCTTTCGCGGTTGCCGGTCAAGTCTTTATGCCGCTTCAGGTGTGTATCAGAGTCTTGGCTTTCGCTAATCACAGACCCCCAATTTGTGAAGATGCATTTCAACAAAGCCATTCAGAATGAGGATCTGTTTTACCAAAGAAGAAAACTGTTATTCACTGATGAAAAAGGTGATTCACTTTACTCTTTCGACCTCGATGAGTTTCTTCATCATTATCATGATCATCCATTTCTGAATGGTCTTGGTAACTGTAACAATGTTAATGTTGGTGTCATTGGTAATGATTATGATGGTGATCTAGTTGTCACTAGACTCAAACTGCCCAGTGGTGTTGGGGTCCCTAAATATTTCAGTGAATGTTGGACCTTGGTGTCTTTCTGCTGTGGCCTAGTGTTATTTAGGTTGGATTCGGACTTATATGTGGCTAACCCAGCATTGAGGAAATATAAGAAACTGCCAGCTCCATCTGCAAAGTTGGATCTTGGATCCTTAATCCATTACCAATTTGGGTTCGGTTTTGATCACACCACTGATGATTTTAAGGTGATTAAATCGATGTCCTGGTATGATGGAGTGGATTTTTTGTCTTTGCATTCAAAACTGGTTCTTGGCGACAAATTCAAAGGCGATTGCCCTACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

232

Amino Acids

26.51

Weight (kDa)

6.74

Isoelectric Point (pI)

45.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 11 - 48 3.1e-12 F-box domain
F-box-like PF12937 11 - 48 7.3e-09 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 427
AccII CGCG 2 cut(s) 54, 67
AciI CCGC 4 cut(s) 5, 20, 67, 91
AclWI GGATC 4 cut(s) 189, 537, 543, 550
AcsI RAATTY 1 cut(s) 674
AcuI CTGAAG 1 cut(s) 79
AfiI CCNNNNNNNGG 1 cut(s) 16
AgsI TTSAA 3 cut(s) 160, 654, 679
AjnI CCWGG 1 cut(s) 617
AluBI AGCT 2 cut(s) 33, 518
AluI AGCT 2 cut(s) 33, 518
AlwI GGATC 4 cut(s) 189, 537, 543, 550
AoxI GGCC 1 cut(s) 442
ApoI RAATTY 1 cut(s) 674
ArsI GACNNNNNNTTYG 2 cut(s) 125, 157
AspS9I GGNCC 3 cut(s) 7, 394, 420
AsuHPI GGTGA 3 cut(s) 239, 362, 613
AvaII GGWCC 3 cut(s) 7, 394, 420
BamHI GGATCC 1 cut(s) 542
BccI CCATC 3 cut(s) 341, 529, 620
BceAI ACGGC 2 cut(s) 12, 22
BciT130I CCWGG 1 cut(s) 619
BclI TGATCA 2 cut(s) 277, 577
BfaI CTAG 3 cut(s) 356, 366, 446
BisI GCNGC 1 cut(s) 91
BlsI GCNGC 1 cut(s) 92
Bme1390I CCNGG 1 cut(s) 619
Bme18I GGWCC 3 cut(s) 7, 394, 420
BmgT120I GGNCC 3 cut(s) 7, 394, 420
BmiI GGNNCC 3 cut(s) 395, 396, 544
BmrFI CCNGG 1 cut(s) 619
BmrI ACTGGG 1 cut(s) 375
BmsI GCATC 1 cut(s) 141
BmuI ACTGGG 1 cut(s) 375
Bsa29I ATCGAT 1 cut(s) 611
BsaBI GATNNNNATC 1 cut(s) 351
BsaJI CCNNGG 1 cut(s) 423
Bsc4I CCNNNNNNNGG 1 cut(s) 16
Bse118I RCCGGY 1 cut(s) 73
Bse1I ACTGG 2 cut(s) 381, 663
Bse8I GATNNNNATC 1 cut(s) 351
BseBI CCWGG 1 cut(s) 619
BseCI ATCGAT 1 cut(s) 611
BseDI CCNNGG 1 cut(s) 423
BseGI GGATG 1 cut(s) 280
BseJI GATNNNNATC 1 cut(s) 351
BseLI CCNNNNNNNGG 1 cut(s) 16
BseNI ACTGG 2 cut(s) 381, 663
BseYI CCCAGC 1 cut(s) 487
Bsh1236I CGCG 2 cut(s) 54, 67
BshFI GGCC 1 cut(s) 444
BshVI ATCGAT 1 cut(s) 611
BsiSI CCGG 1 cut(s) 74
BslFI GGGAC 1 cut(s) 380
BslI CCNNNNNNNGG 1 cut(s) 16
BsmFI GGGAC 1 cut(s) 380
BsmI GAATGC 1 cut(s) 649
BsnI GGCC 1 cut(s) 444
Bsp143I GATC 7 cut(s) 45, 181, 277, 352, 535, 542, 577
BspACI CCGC 4 cut(s) 5, 20, 67, 91
BspANI GGCC 1 cut(s) 444
BspDI ATCGAT 1 cut(s) 611
BspFNI CGCG 2 cut(s) 54, 67
BspHI TCATGA 1 cut(s) 274
BspLI GGNNCC 3 cut(s) 395, 396, 544
BspPI GGATC 4 cut(s) 189, 537, 543, 550
BsrFI RCCGGY 1 cut(s) 73
BsrI ACTGG 2 cut(s) 381, 663
BssAI RCCGGY 1 cut(s) 73
BssECI CCNNGG 1 cut(s) 423
BssMI GATC 7 cut(s) 45, 181, 277, 352, 535, 542, 577
BssT1I CCWWGG 1 cut(s) 423
Bst2UI CCWGG 1 cut(s) 619
Bst4CI ACNGT 2 cut(s) 207, 308
BstC8I GCNNGC 2 cut(s) 35, 516
BstF5I GGATG 1 cut(s) 280
BstFNI CGCG 2 cut(s) 54, 67
BstKTI GATC 7 cut(s) 48, 184, 280, 355, 538, 545, 580
BstMBI GATC 7 cut(s) 45, 181, 277, 352, 535, 542, 577
BstMWI GCNNNNNNNGC 2 cut(s) 488, 524
BstNI CCWGG 1 cut(s) 619
BstSCI CCNGG 1 cut(s) 617
BstUI CGCG 2 cut(s) 54, 67
BstX2I RGATCY 3 cut(s) 181, 535, 542
BstYI RGATCY 3 cut(s) 181, 535, 542
Bsu15I ATCGAT 1 cut(s) 611
BsuRI GGCC 1 cut(s) 444
BsuTUI ATCGAT 1 cut(s) 611
BtsCI GGATG 1 cut(s) 280
BtsIMutI CAGTG 4 cut(s) 213, 388, 415, 585
Cac8I GCNNGC 2 cut(s) 35, 516
CciI TCATGA 1 cut(s) 274
Cfr10I RCCGGY 1 cut(s) 73
Cfr13I GGNCC 3 cut(s) 7, 394, 420
ClaI ATCGAT 1 cut(s) 611
CviAII CATG 1 cut(s) 275
CviJI RGCY 6 cut(s) 33, 118, 167, 444, 482, 518
CviKI_1 RGCY 6 cut(s) 33, 118, 167, 444, 482, 518
DpnI GATC 7 cut(s) 47, 183, 279, 354, 537, 544, 579
DpnII GATC 7 cut(s) 45, 181, 277, 352, 535, 542, 577
DrdI GACNNNNNNGTC 1 cut(s) 427
DseDI GACNNNNNNGTC 1 cut(s) 427
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 423
Eco47I GGWCC 3 cut(s) 7, 394, 420
Eco57I CTGAAG 1 cut(s) 79
EcoO109I RGGNCCY 1 cut(s) 394
EcoRII CCWGG 1 cut(s) 617
EcoT14I CCWWGG 1 cut(s) 423
EcoT22I ATGCAT 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 423
FaeI CATG 1 cut(s) 278
FaiI YATR 9 cut(s) 50, 88, 276, 345, 475, 477, 504, 624, 697
FaqI GGGAC 1 cut(s) 380
FatI CATG 1 cut(s) 274
FbaI TGATCA 2 cut(s) 277, 577
Fnu4HI GCNGC 1 cut(s) 91
FokI GGATG 1 cut(s) 267
Fsp4HI GCNGC 1 cut(s) 91
FspBI CTAG 3 cut(s) 356, 366, 446
GluI GCNGC 1 cut(s) 91
GsaI CCCAGC 1 cut(s) 491
HaeIII GGCC 1 cut(s) 444
HapII CCGG 1 cut(s) 74
Hin1II CATG 1 cut(s) 278
HinfI GANTC 5 cut(s) 58, 110, 230, 369, 464
HpaII CCGG 1 cut(s) 74
HphI GGTGA 3 cut(s) 239, 362, 613
Hpy188I TCNGA 5 cut(s) 43, 109, 174, 291, 469
Hpy188III TCNNGA 1 cut(s) 275
Hpy99I CGWCG 1 cut(s) 43
HpyCH4III ACNGT 2 cut(s) 207, 308
HpyCH4V TGCA 3 cut(s) 154, 527, 649
HpyF10VI GCNNNNNNNGC 2 cut(s) 488, 524
Hsp92II CATG 1 cut(s) 278
KflI GGGWCCC 1 cut(s) 394
Ksp22I TGATCA 2 cut(s) 277, 577
Kzo9I GATC 7 cut(s) 45, 181, 277, 352, 535, 542, 577
LmnI GCTCC 1 cut(s) 523
LpnPI CCDG 8 cut(s) 82, 87, 394, 501, 528, 604, 631, 644
LweI GCATC 1 cut(s) 141
MaeI CTAG 3 cut(s) 356, 366, 446
MaeIII GTNAC 3 cut(s) 302, 308, 361
MalI GATC 7 cut(s) 47, 183, 279, 354, 537, 544, 579
MboI GATC 7 cut(s) 45, 181, 277, 352, 535, 542, 577
MboII GAAGA 3 cut(s) 160, 210, 254
MflI RGATCY 3 cut(s) 181, 535, 542
MluCI AATT 3 cut(s) 140, 560, 674
MlyI GAGTC 2 cut(s) 119, 363
MmeI TCCRAC 4 cut(s) 21, 398, 441, 513
MnlI CCTC 3 cut(s) 172, 260, 489
Mph1103I ATGCAT 1 cut(s) 156
MseI TTAA 4 cut(s) 318, 548, 597, 606
MslI CAYNNNNRTG 1 cut(s) 273
MspI CCGG 1 cut(s) 74
MspR9I CCNGG 1 cut(s) 619
Mva1269I GAATGC 1 cut(s) 649
MvaI CCWGG 1 cut(s) 619
MvnI CGCG 2 cut(s) 54, 67
MwoI GCNNNNNNNGC 2 cut(s) 488, 524
NdeII GATC 7 cut(s) 45, 181, 277, 352, 535, 542, 577
NlaIII CATG 1 cut(s) 278
NlaIV GGNNCC 3 cut(s) 395, 396, 544
NmuCI GTSAC 1 cut(s) 361
NsiI ATGCAT 1 cut(s) 156
PagI TCATGA 1 cut(s) 274
PctI GAATGC 1 cut(s) 649
PfeI GAWTC 3 cut(s) 58, 230, 464
PkrI GCNGC 1 cut(s) 92
PleI GAGTC 2 cut(s) 118, 363
PpsI GAGTC 2 cut(s) 118, 363
PpuMI RGGWCCY 1 cut(s) 394
Psp5II RGGWCCY 1 cut(s) 394
Psp6I CCWGG 1 cut(s) 617
PspFI CCCAGC 1 cut(s) 487
PspGI CCWGG 1 cut(s) 617
PspN4I GGNNCC 3 cut(s) 395, 396, 544
PspPI GGNCC 3 cut(s) 7, 394, 420
PspPPI RGGWCCY 1 cut(s) 394
PsuI RGATCY 3 cut(s) 181, 535, 542
RseI CAYNNNNRTG 1 cut(s) 273
SaqAI TTAA 4 cut(s) 318, 548, 597, 606
SatI GCNGC 1 cut(s) 91
Sau3AI GATC 7 cut(s) 45, 181, 277, 352, 535, 542, 577
Sau96I GGNCC 3 cut(s) 7, 394, 420
SchI GAGTC 2 cut(s) 119, 363
ScrFI CCNGG 1 cut(s) 619
SetI ASST 8 cut(s) 35, 101, 229, 252, 425, 461, 520, 603
SfaNI GCATC 1 cut(s) 141
SinI GGWCC 3 cut(s) 7, 394, 420
SmiMI CAYNNNNRTG 1 cut(s) 273
Sse9I AATT 3 cut(s) 140, 560, 674
SsiI CCGC 4 cut(s) 5, 20, 67, 91
SspI AATATT 1 cut(s) 404
SspMI CTAG 3 cut(s) 356, 366, 446
StyD4I CCNGG 1 cut(s) 617
StyI CCWWGG 1 cut(s) 423
TaaI ACNGT 2 cut(s) 207, 308
TaqI TCGA 3 cut(s) 246, 252, 611
TasI AATT 3 cut(s) 140, 560, 674
TauI GCSGC 1 cut(s) 93
TfiI GAWTC 3 cut(s) 58, 230, 464
Tru1I TTAA 4 cut(s) 318, 548, 597, 606
Tru9I TTAA 4 cut(s) 318, 548, 597, 606
TscAI CASTG 4 cut(s) 220, 388, 415, 592
TseFI GTSAC 1 cut(s) 361
Tsp45I GTSAC 1 cut(s) 361
TspDTI ATGAA 2 cut(s) 234, 254
TspRI CASTG 4 cut(s) 220, 388, 415, 592
VpaK11BI GGWCC 3 cut(s) 7, 394, 420
XapI RAATTY 1 cut(s) 674
XcmI CCANNNNNNNNNTGG 1 cut(s) 560
XspI CTAG 3 cut(s) 356, 366, 446
Zsp2I ATGCAT 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.