FvH4_5g38211

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000111
Physical Location & Seq
Forward (+)
28262916 .. 28264075
1160 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g38211.t1

Sequence Viewer

Length: 339 bp
ATGGAAGACAATGGCGAGCTTGCGGGGCACCGATTCCGTCTTCCTTCCGAGATCATGGTTGAGATTCTTTCAAGGCTACCAGTCAAGTCATTATGCCGCTTCAGGTGCGTATCAAAGCCCTGGCGTTCTCTAATCTCCAACACCAAGTTCATTGCACTGCACGCCAAGAAAGCCCTCGAGGATAAAGAGAATTCATTGGTTATGTACCACTTTATGAAAGAAAGTGGTAGGAAGCTACAAATTCGTGATATACCTGAGGTTGATAATTGTGTGGGGGTTTATGTTGAGGGGCTTTTTCCACTTACTGATCAAGCTAGAGAAGGACGAGAGTCGACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

113

Amino Acids

12.91

Weight (kDa)

8.51

Isoelectric Point (pI)

34.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 13 - 50 6.7e-13 F-box domain
F-box-like PF12937 13 - 48 5.7e-11 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 176
AccB1I GGYRCC 1 cut(s) 27
AccI GTMKAC 1 cut(s) 332
AciI CCGC 2 cut(s) 23, 97
AcsI RAATTY 2 cut(s) 190, 240
AcuI CTGAAG 1 cut(s) 85
AfaI GTAC 1 cut(s) 206
AgsI TTSAA 1 cut(s) 72
AjnI CCWGG 1 cut(s) 119
AjuI GAANNNNNNNTTGG 2 cut(s) 131, 163
AluBI AGCT 3 cut(s) 19, 235, 314
AluI AGCT 3 cut(s) 19, 235, 314
Ama87I CYCGRG 1 cut(s) 176
ApoI RAATTY 2 cut(s) 190, 240
AvaI CYCGRG 1 cut(s) 176
AxyI CCTNAGG 1 cut(s) 255
BaeGI GKGCMC 1 cut(s) 30
BanI GGYRCC 1 cut(s) 27
BbsI GAAGAC 2 cut(s) 12, 32
BciT130I CCWGG 1 cut(s) 121
BclI TGATCA 1 cut(s) 307
BfaI CTAG 1 cut(s) 315
BisI GCNGC 1 cut(s) 97
BlsI GCNGC 1 cut(s) 98
Bme1390I CCNGG 1 cut(s) 121
BmeT110I CYCGRG 1 cut(s) 176
BmiI GGNNCC 1 cut(s) 29
BmrFI CCNGG 1 cut(s) 121
BoxI GACNNNNGTC 1 cut(s) 328
BpiI GAAGAC 2 cut(s) 12, 32
BsaJI CCNNGG 1 cut(s) 119
Bse1I ACTGG 1 cut(s) 80
Bse21I CCTNAGG 1 cut(s) 255
Bse3DI GCAATG 1 cut(s) 150
BseBI CCWGG 1 cut(s) 121
BseDI CCNNGG 1 cut(s) 119
BseMI GCAATG 1 cut(s) 150
BseMII CTCAG 1 cut(s) 246
BseNI ACTGG 1 cut(s) 80
BseSI GKGCMC 1 cut(s) 30
BsgI GTGCAG 1 cut(s) 143
BshNI GGYRCC 1 cut(s) 27
BsiHKCI CYCGRG 1 cut(s) 176
BsoBI CYCGRG 1 cut(s) 176
Bsp1286I GDGCHC 1 cut(s) 30
Bsp143I GATC 2 cut(s) 51, 307
BspACI CCGC 2 cut(s) 23, 97
BspCNI CTCAG 1 cut(s) 247
BspLI GGNNCC 1 cut(s) 29
BspT107I GGYRCC 1 cut(s) 27
BsrDI GCAATG 1 cut(s) 150
BsrI ACTGG 1 cut(s) 80
BssECI CCNNGG 1 cut(s) 119
BssMI GATC 2 cut(s) 51, 307
Bst2UI CCWGG 1 cut(s) 121
BstC8I GCNNGC 3 cut(s) 17, 21, 162
BstDEI CTNAG 1 cut(s) 255
BstKTI GATC 2 cut(s) 54, 310
BstMBI GATC 2 cut(s) 51, 307
BstMWI GCNNNNNNNGC 4 cut(s) 25, 105, 161, 170
BstNI CCWGG 1 cut(s) 121
BstPAI GACNNNNGTC 1 cut(s) 328
BstSCI CCNGG 1 cut(s) 119
BstSLI GKGCMC 1 cut(s) 30
BstV2I GAAGAC 2 cut(s) 12, 32
Bsu36I CCTNAGG 1 cut(s) 255
BtsI GCAGTG 1 cut(s) 155
BtsIMutI CAGTG 1 cut(s) 155
Cac8I GCNNGC 3 cut(s) 17, 21, 162
Csp6I GTAC 1 cut(s) 205
CviAII CATG 1 cut(s) 55
CviJI RGCY 7 cut(s) 19, 76, 118, 173, 235, 292, 314
CviKI_1 RGCY 7 cut(s) 19, 76, 118, 173, 235, 292, 314
CviQI GTAC 1 cut(s) 205
DdeI CTNAG 1 cut(s) 255
DpnI GATC 2 cut(s) 53, 309
DpnII GATC 2 cut(s) 51, 307
Eco57I CTGAAG 1 cut(s) 85
Eco81I CCTNAGG 1 cut(s) 255
Eco88I CYCGRG 1 cut(s) 176
EcoRI GAATTC 1 cut(s) 190
EcoRII CCWGG 1 cut(s) 119
FaeI CATG 1 cut(s) 58
FaiI YATR 6 cut(s) 56, 94, 203, 215, 251, 282
FatI CATG 1 cut(s) 54
FauI CCCGC 1 cut(s) 16
FbaI TGATCA 1 cut(s) 307
FblI GTMKAC 1 cut(s) 332
Fnu4HI GCNGC 1 cut(s) 97
Fsp4HI GCNGC 1 cut(s) 97
FspBI CTAG 1 cut(s) 315
GluI GCNGC 1 cut(s) 97
Hin1II CATG 1 cut(s) 58
HincII GTYRAC 1 cut(s) 333
HindII GTYRAC 1 cut(s) 333
HinfI GANTC 3 cut(s) 33, 64, 329
Hpy166II GTNNAC 1 cut(s) 333
Hpy188I TCNGA 1 cut(s) 49
Hpy188III TCNNGA 1 cut(s) 245
Hpy8I GTNNAC 1 cut(s) 333
Hpy99I CGWCG 1 cut(s) 337
HpyAV CCTTC 2 cut(s) 54, 314
HpyCH4IV ACGT 1 cut(s) 335
HpyCH4V TGCA 2 cut(s) 155, 160
HpyF10VI GCNNNNNNNGC 4 cut(s) 25, 105, 161, 170
HpyF3I CTNAG 1 cut(s) 255
HpySE526I ACGT 1 cut(s) 335
Hsp92II CATG 1 cut(s) 58
Ksp22I TGATCA 1 cut(s) 307
Kzo9I GATC 2 cut(s) 51, 307
LpnPI CCDG 5 cut(s) 88, 93, 106, 133, 267
MaeI CTAG 1 cut(s) 315
MaeII ACGT 1 cut(s) 335
MalI GATC 2 cut(s) 53, 309
MboI GATC 2 cut(s) 51, 307
MboII GAAGA 2 cut(s) 17, 32
MhlI GDGCHC 1 cut(s) 30
MluCI AATT 3 cut(s) 190, 240, 265
MlyI GAGTC 1 cut(s) 338
MmeI TCCRAC 1 cut(s) 162
MnlI CCTC 4 cut(s) 172, 185, 250, 280
MspR9I CCNGG 1 cut(s) 121
MvaI CCWGG 1 cut(s) 121
MwoI GCNNNNNNNGC 4 cut(s) 25, 105, 161, 170
NdeII GATC 2 cut(s) 51, 307
NlaIII CATG 1 cut(s) 58
NlaIV GGNNCC 1 cut(s) 29
PaeR7I CTCGAG 1 cut(s) 176
PfeI GAWTC 2 cut(s) 33, 64
PkrI GCNGC 1 cut(s) 98
PleI GAGTC 1 cut(s) 337
PpsI GAGTC 1 cut(s) 337
PshAI GACNNNNGTC 1 cut(s) 328
Psp6I CCWGG 1 cut(s) 119
PspGI CCWGG 1 cut(s) 119
PspN4I GGNNCC 1 cut(s) 29
PspXI VCTCGAGB 1 cut(s) 176
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
SalI GTCGAC 1 cut(s) 331
SatI GCNGC 1 cut(s) 97
Sau3AI GATC 2 cut(s) 51, 307
SchI GAGTC 1 cut(s) 338
ScrFI CCNGG 1 cut(s) 121
SduI GDGCHC 1 cut(s) 30
SetI ASST 7 cut(s) 21, 107, 237, 256, 261, 316, 338
Sfr274I CTCGAG 1 cut(s) 176
SlaI CTCGAG 1 cut(s) 176
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
Sse9I AATT 3 cut(s) 190, 240, 265
SsiI CCGC 2 cut(s) 23, 97
SspMI CTAG 1 cut(s) 315
StyD4I CCNGG 1 cut(s) 119
TaiI ACGT 1 cut(s) 338
TaqI TCGA 2 cut(s) 177, 332
TasI AATT 3 cut(s) 190, 240, 265
TauI GCSGC 1 cut(s) 99
TfiI GAWTC 2 cut(s) 33, 64
TscAI CASTG 1 cut(s) 162
TspDTI ATGAA 3 cut(s) 139, 183, 230
TspGWI ACGGA 1 cut(s) 26
TspRI CASTG 1 cut(s) 162
XapI RAATTY 2 cut(s) 190, 240
XhoI CTCGAG 1 cut(s) 176
XmiI GTMKAC 1 cut(s) 332
XspI CTAG 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.