pycom15g03310

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0000111
Physical Location & Seq
Forward (+)
2057573 .. 2058648
1076 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g03310.2

Sequence Viewer

Length: 891 bp
ATGTTTTGTTCATGTTATCTGATAGGTTCTGGTACAGAAGAATTTTTTCCACAAACCATATCACCTTCCCCAATTAATTTTTCCCCACCCTCCATCCCCAATTGTTTTTCCCGACACCCATACCCTCATCCCTTTGAGAAGCTTACTTGGAGAAACCTGGAGAACGAGAGAACGAGTTTGCTAGTTTTTGGAACGAAAGAACGAGAGAACGAGAGAGACCTCAGAGGAAAGGGAGGGCAGTTTTGGGTTATTCATATTTCATTAAACCTGTACACTGTTCACCCGTGTGTGGGTGAAAATAAGCTGCTTTTGGAAGCTGCAAATTGCAGCTTCTTGTCATCTCCTGGTTTTGGGCTTTTTTTCACCCTCAACTTTGAAACAAAGCTGTTTTTCAAAGTTTACCAAACACCAAAAATTTTCATAGCTTTTTTTCATAGTAGCTTTTTTTTTAATCACCTCACTCCCAAACAGGCCCTAAGTACAGTGAAGCTGCCGAACCGGGTTTGGGCCTTTGAAAAAATTTCTTCCAAGCAAAAATATGGTTCCCTCCGGGACGTAGTGAGTTTGGGCCTTTGGGCCTCAATTGTGAATATTTGGGCCTTAAAATCTATTTTAATCCAACTGAAAATTAGACATGACAGTCTTTTCTTAATTAAAATTTTGAGTCTCTTGGAATTCAATTTGGTTTGGTGCAGTTTTATTATTAATTGTGGTCCCAAGTCTCAACAATTGAATGGGATTGCACACATTCGTCATTGTATATATTTATTTCGTGTTATGTTATTAGTCGCAAGAACAATTAATAACAAAATCTCACCAAACCAAAAGCTCCTCACCTTCACAACCTTTAGCTCCTTCAATAGAACAACATCTTCCTCTGTTTTCATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

297

Amino Acids

34.06

Weight (kDa)

9.65

Isoelectric Point (pI)

32.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 639
AcsI RAATTY 5 cut(s) 41, 414, 519, 657, 674
AfaI GTAC 3 cut(s) 34, 272, 481
AfiI CCNNNNNNNGG 4 cut(s) 289, 290, 350, 505
AgsI TTSAA 6 cut(s) 377, 394, 515, 679, 733, 859
AjnI CCWGG 2 cut(s) 156, 343
AjuI GAANNNNNNNTTGG 2 cut(s) 64, 96
AleI CACNNNNGTG 1 cut(s) 285
Alw26I GTCTC 3 cut(s) 210, 671, 726
AoxI GGCC 5 cut(s) 471, 507, 568, 576, 597
ApeKI GCWGC 4 cut(s) 304, 317, 327, 490
ApoI RAATTY 5 cut(s) 41, 414, 519, 657, 674
AseI ATTAAT 3 cut(s) 75, 705, 801
Asp700I GAANNNNTTC 1 cut(s) 45
AspS9I GGNCC 6 cut(s) 472, 507, 568, 576, 597, 713
AsuC2I CCSGG 2 cut(s) 500, 551
AsuHPI GGTGA 7 cut(s) 54, 272, 305, 355, 446, 807, 826
AvaII GGWCC 1 cut(s) 713
BbvI GCAGC 4 cut(s) 291, 304, 339, 477
BccI CCATC 1 cut(s) 101
BciT130I CCWGG 2 cut(s) 158, 345
BcnI CCSGG 2 cut(s) 500, 551
BcoDI GTCTC 3 cut(s) 210, 671, 726
BfaI CTAG 1 cut(s) 182
BisI GCNGC 4 cut(s) 305, 318, 328, 491
BlsI GCNGC 4 cut(s) 306, 319, 329, 492
Bme1390I CCNGG 4 cut(s) 158, 345, 500, 551
Bme18I GGWCC 1 cut(s) 713
BmgT120I GGNCC 6 cut(s) 472, 507, 568, 576, 597, 713
BmiI GGNNCC 2 cut(s) 544, 715
BmrFI CCNGG 4 cut(s) 158, 345, 500, 551
BpmI CTGGAG 1 cut(s) 179
BpuMI CCSGG 2 cut(s) 500, 551
BsaI GGTCTC 1 cut(s) 210
Bsc4I CCNNNNNNNGG 4 cut(s) 289, 290, 350, 505
BseBI CCWGG 2 cut(s) 158, 345
BseGI GGATG 2 cut(s) 93, 127
BseLI CCNNNNNNNGG 4 cut(s) 289, 290, 350, 505
BseMII CTCAG 1 cut(s) 235
BseRI GAGGAG 1 cut(s) 821
BseXI GCAGC 4 cut(s) 291, 304, 339, 477
BsgI GTGCAG 1 cut(s) 712
BshFI GGCC 5 cut(s) 473, 509, 570, 578, 599
BsiSI CCGG 2 cut(s) 499, 550
BslFI GGGAC 2 cut(s) 566, 699
BslI CCNNNNNNNGG 4 cut(s) 289, 290, 350, 505
BsmAI GTCTC 3 cut(s) 210, 671, 726
BsmFI GGGAC 2 cut(s) 566, 699
BsnI GGCC 5 cut(s) 473, 509, 570, 578, 599
Bso31I GGTCTC 1 cut(s) 210
Bsp1407I TGTACA 1 cut(s) 270
BspANI GGCC 5 cut(s) 473, 509, 570, 578, 599
BspCNI CTCAG 1 cut(s) 234
BspLI GGNNCC 2 cut(s) 544, 715
BspTNI GGTCTC 1 cut(s) 210
BsrGI TGTACA 1 cut(s) 270
Bst2UI CCWGG 2 cut(s) 158, 345
Bst4CI ACNGT 3 cut(s) 277, 484, 641
BstAUI TGTACA 1 cut(s) 270
BstDEI CTNAG 2 cut(s) 221, 476
BstF5I GGATG 2 cut(s) 93, 127
BstMAI GTCTC 3 cut(s) 210, 671, 726
BstNI CCWGG 2 cut(s) 158, 345
BstSCI CCNGG 4 cut(s) 156, 343, 498, 549
BstV1I GCAGC 4 cut(s) 291, 304, 339, 477
BsuRI GGCC 5 cut(s) 473, 509, 570, 578, 599
BtsCI GGATG 2 cut(s) 93, 127
BtsIMutI CAGTG 2 cut(s) 273, 489
Cfr13I GGNCC 6 cut(s) 472, 507, 568, 576, 597, 713
Csp6I GTAC 3 cut(s) 33, 271, 480
CviAII CATG 2 cut(s) 12, 635
CviQI GTAC 3 cut(s) 33, 271, 480
DdeI CTNAG 2 cut(s) 221, 476
DrdI GACNNNNNNGTC 1 cut(s) 639
DseDI GACNNNNNNGTC 1 cut(s) 639
Eco31I GGTCTC 1 cut(s) 210
Eco47I GGWCC 1 cut(s) 713
EcoO109I RGGNCCY 1 cut(s) 472
EcoRI GAATTC 1 cut(s) 674
EcoRII CCWGG 2 cut(s) 156, 343
FaeI CATG 2 cut(s) 15, 638
FaqI GGGAC 2 cut(s) 566, 699
FatI CATG 2 cut(s) 11, 634
Fnu4HI GCNGC 4 cut(s) 305, 318, 328, 491
FokI GGATG 2 cut(s) 80, 114
Fsp4HI GCNGC 4 cut(s) 305, 318, 328, 491
FspBI CTAG 1 cut(s) 182
GluI GCNGC 4 cut(s) 305, 318, 328, 491
GsuI CTGGAG 1 cut(s) 179
HaeIII GGCC 5 cut(s) 473, 509, 570, 578, 599
HapII CCGG 2 cut(s) 499, 550
Hin1II CATG 2 cut(s) 15, 638
HindIII AAGCTT 1 cut(s) 140
HinfI GANTC 1 cut(s) 664
HpaII CCGG 2 cut(s) 499, 550
HphI GGTGA 7 cut(s) 54, 272, 305, 355, 446, 807, 826
Hpy166II GTNNAC 3 cut(s) 273, 280, 400
Hpy188I TCNGA 2 cut(s) 21, 224
Hpy188III TCNNGA 1 cut(s) 111
Hpy8I GTNNAC 3 cut(s) 273, 280, 400
HpyAV CCTTC 3 cut(s) 75, 847, 865
HpyCH4III ACNGT 3 cut(s) 277, 484, 641
HpyCH4IV ACGT 1 cut(s) 555
HpyCH4V TGCA 4 cut(s) 320, 327, 693, 743
HpyF3I CTNAG 2 cut(s) 221, 476
HpySE526I ACGT 1 cut(s) 555
Hsp92II CATG 2 cut(s) 15, 638
LmnI GCTCC 2 cut(s) 834, 857
LpnPI CCDG 9 cut(s) 15, 143, 170, 281, 330, 357, 455, 512, 563
Lsp1109I GCAGC 4 cut(s) 291, 304, 339, 477
MaeI CTAG 1 cut(s) 182
MaeII ACGT 1 cut(s) 555
MboII GAAGA 3 cut(s) 50, 516, 864
MfeI CAATTG 3 cut(s) 100, 582, 728
MlyI GAGTC 1 cut(s) 673
MmeI TCCRAC 1 cut(s) 643
MroXI GAANNNNTTC 1 cut(s) 45
MseI TTAA 9 cut(s) 75, 263, 450, 602, 614, 650, 654, 705, 801
MslI CAYNNNNRTG 1 cut(s) 285
MspI CCGG 2 cut(s) 499, 550
MspR9I CCNGG 4 cut(s) 158, 345, 500, 551
MunI CAATTG 3 cut(s) 100, 582, 728
MvaI CCWGG 2 cut(s) 158, 345
NciI CCSGG 2 cut(s) 500, 551
NlaIII CATG 2 cut(s) 15, 638
NlaIV GGNNCC 2 cut(s) 544, 715
OliI CACNNNNGTG 1 cut(s) 285
PacI TTAATTAA 1 cut(s) 654
PdmI GAANNNNTTC 1 cut(s) 45
PfoI TCCNGGA 1 cut(s) 549
PkrI GCNGC 4 cut(s) 306, 319, 329, 492
PleI GAGTC 1 cut(s) 672
PpsI GAGTC 1 cut(s) 672
PshBI ATTAAT 3 cut(s) 75, 705, 801
Psp6I CCWGG 2 cut(s) 156, 343
PspGI CCWGG 2 cut(s) 156, 343
PspN4I GGNNCC 2 cut(s) 544, 715
PspPI GGNCC 6 cut(s) 472, 507, 568, 576, 597, 713
RsaI GTAC 3 cut(s) 34, 272, 481
RsaNI GTAC 3 cut(s) 33, 271, 480
RseI CAYNNNNRTG 1 cut(s) 285
SaqAI TTAA 9 cut(s) 75, 263, 450, 602, 614, 650, 654, 705, 801
SatI GCNGC 4 cut(s) 305, 318, 328, 491
Sau96I GGNCC 6 cut(s) 472, 507, 568, 576, 597, 713
SchI GAGTC 1 cut(s) 673
ScrFI CCNGG 4 cut(s) 158, 345, 500, 551
SinI GGWCC 1 cut(s) 713
SmiMI CAYNNNNRTG 1 cut(s) 285
SspI AATATT 1 cut(s) 592
SspMI CTAG 1 cut(s) 182
StyD4I CCNGG 4 cut(s) 156, 343, 498, 549
TaaI ACNGT 3 cut(s) 277, 484, 641
TaiI ACGT 1 cut(s) 558
TatI WGTACW 2 cut(s) 270, 479
Tru1I TTAA 9 cut(s) 75, 263, 450, 602, 614, 650, 654, 705, 801
Tru9I TTAA 9 cut(s) 75, 263, 450, 602, 614, 650, 654, 705, 801
TscAI CASTG 2 cut(s) 280, 489
TseI GCWGC 4 cut(s) 304, 317, 327, 490
TspDTI ATGAA 5 cut(s) 242, 249, 409, 422, 874
TspRI CASTG 2 cut(s) 280, 489
VpaK11BI GGWCC 1 cut(s) 713
VspI ATTAAT 3 cut(s) 75, 705, 801
XapI RAATTY 5 cut(s) 41, 414, 519, 657, 674
XmnI GAANNNNTTC 1 cut(s) 45
XspI CTAG 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.