Rh2DG056700

F-box kelch-repeat protein At3g06240-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
4192761 .. 4193834
1074 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG056700.1

Sequence Viewer

Length: 705 bp
ATGCACTCCTCTAAAGCCTTTGAGATTAAGGATGTGTTGTCCCAAAGACTAAAACTATTATTTACTGACTGGGAAAGTGATTGCGTTTACTCTTTGGATGTTGGCCAGCTTCTCAACCATAATCATAATGTTGAAGTTGATGGTTTAGTAGCAACATCAGCTGAGCTCGATTTTGTTTTCGATAATCTTCCAAGAAGTGGTGGATACAATTGTACTGGCCTTGTGCATACGTGCAATAACTTCTTATTCTTCCAGATAACTGACCCTATTGAAACAGTTAATAGCTTTGTGCATAACCATTTGATAACTAACCCTGCAACAAGGGAATTAAAGAAAGTACCATTGCCACCACCGTGGAGGCTACAAAGGGAGCCTGATTTTTTGGACTATTATGGTTTTGGATTTGATTACTCCACTAATCAATACAAGGTGGTTAACATGCAGGTCTCCAAACCATATCGGGAATTATCACATTCCGGTTTCTGGACAGAATCACATGATCTGATGGTGTTTGATAAGTCATCATTGGTTATGTACAATTTTAATGATGGAACATTTTGGAATCTATCAATTGGTGATATTACCACAGCTGATGGTTATTTTGGTAGCTTCGGTATTTATGTGGAGAGTCTTGCTTCGAATGCTTCGCTTAAGAACATGCGAGAAGTAGAGAAGATTGATGAATCCACTCAATGGCATCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

234

Amino Acids

26.88

Weight (kDa)

4.98

Isoelectric Point (pI)

25.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 433
AccB7I CCANNNNNTGG 2 cut(s) 197, 693
AcoI YGGCCR 1 cut(s) 103
AfaI GTAC 3 cut(s) 214, 339, 536
AfiI CCNNNNNNNGG 3 cut(s) 197, 483, 693
AflII CTTAAG 1 cut(s) 650
AgsI TTSAA 2 cut(s) 134, 272
AleI CACNNNNGTG 1 cut(s) 352
AluBI AGCT 6 cut(s) 109, 161, 166, 285, 590, 609
AluI AGCT 6 cut(s) 109, 161, 166, 285, 590, 609
Alw21I GWGCWC 1 cut(s) 168
Alw26I GTCTC 1 cut(s) 451
AoxI GGCC 2 cut(s) 103, 217
AsuHPI GGTGA 1 cut(s) 587
AsuII TTCGAA 1 cut(s) 638
BaeI ACNNNNGTAYC 2 cut(s) 196, 229
BalI TGGCCA 1 cut(s) 105
BanII GRGCYC 1 cut(s) 168
Bbv12I GWGCWC 1 cut(s) 168
BccI CCATC 4 cut(s) 134, 499, 542, 587
BciVI GTATCC 1 cut(s) 197
BcoDI GTCTC 1 cut(s) 451
BfrI CTTAAG 1 cut(s) 650
BfuAI ACCTGC 1 cut(s) 433
BfuI GTATCC 1 cut(s) 197
BlpI GCTNAGC 1 cut(s) 162
BmiI GGNNCC 1 cut(s) 372
BmrI ACTGGG 1 cut(s) 79
BmuI ACTGGG 1 cut(s) 79
Bpu1102I GCTNAGC 1 cut(s) 162
Bpu14I TTCGAA 1 cut(s) 638
BsaAI YACGTR 1 cut(s) 231
BsaI GGTCTC 1 cut(s) 451
BsaJI CCNNGG 1 cut(s) 353
BsaWI WCCGGW 1 cut(s) 476
Bsc4I CCNNNNNNNGG 3 cut(s) 197, 483, 693
Bse1I ACTGG 2 cut(s) 74, 220
Bse3DI GCAATG 1 cut(s) 341
BseDI CCNNGG 1 cut(s) 353
BseGI GGATG 3 cut(s) 37, 103, 697
BseLI CCNNNNNNNGG 3 cut(s) 197, 483, 693
BseMI GCAATG 1 cut(s) 341
BseMII CTCAG 1 cut(s) 153
BseNI ACTGG 2 cut(s) 74, 220
BshFI GGCC 2 cut(s) 105, 219
BsiHKAI GWGCWC 1 cut(s) 168
BsiSI CCGG 1 cut(s) 477
BslFI GGGAC 1 cut(s) 25
BslI CCNNNNNNNGG 3 cut(s) 197, 483, 693
BsmAI GTCTC 1 cut(s) 451
BsmFI GGGAC 1 cut(s) 25
BsmI GAATGC 1 cut(s) 646
BsnI GGCC 2 cut(s) 105, 219
Bso31I GGTCTC 1 cut(s) 451
Bsp119I TTCGAA 1 cut(s) 638
Bsp1286I GDGCHC 1 cut(s) 168
Bsp1407I TGTACA 1 cut(s) 534
Bsp143I GATC 1 cut(s) 499
Bsp1720I GCTNAGC 1 cut(s) 162
BspANI GGCC 2 cut(s) 105, 219
BspCNI CTCAG 1 cut(s) 154
BspLI GGNNCC 1 cut(s) 372
BspMI ACCTGC 1 cut(s) 433
BspT104I TTCGAA 1 cut(s) 638
BspTI CTTAAG 1 cut(s) 650
BspTNI GGTCTC 1 cut(s) 451
BsrDI GCAATG 1 cut(s) 341
BsrGI TGTACA 1 cut(s) 534
BsrI ACTGG 2 cut(s) 74, 220
BssECI CCNNGG 1 cut(s) 353
BssMI GATC 1 cut(s) 499
Bst4CI ACNGT 2 cut(s) 277, 354
BstAFI CTTAAG 1 cut(s) 650
BstAUI TGTACA 1 cut(s) 534
BstBAI YACGTR 1 cut(s) 231
BstBI TTCGAA 1 cut(s) 638
BstC8I GCNNGC 1 cut(s) 107
BstDEI CTNAG 1 cut(s) 162
BstDSI CCRYGG 1 cut(s) 353
BstF5I GGATG 3 cut(s) 37, 103, 697
BstKTI GATC 1 cut(s) 502
BstMAI GTCTC 1 cut(s) 451
BstMBI GATC 1 cut(s) 499
BstMWI GCNNNNNNNGC 2 cut(s) 158, 641
BstNSI RCATGY 2 cut(s) 442, 661
BstXI CCANNNNNNTGG 1 cut(s) 354
BsuI GTATCC 1 cut(s) 197
BsuRI GGCC 2 cut(s) 105, 219
BtgI CCRYGG 1 cut(s) 353
BtsCI GGATG 3 cut(s) 37, 103, 697
BveI ACCTGC 1 cut(s) 433
Cac8I GCNNGC 1 cut(s) 107
Csp6I GTAC 3 cut(s) 213, 338, 535
CviAII CATG 3 cut(s) 439, 497, 658
CviQI GTAC 3 cut(s) 213, 338, 535
DdeI CTNAG 1 cut(s) 162
DpnI GATC 1 cut(s) 501
DpnII GATC 1 cut(s) 499
EaeI YGGCCR 1 cut(s) 103
Ecl136II GAGCTC 1 cut(s) 166
Eco24I GRGCYC 1 cut(s) 168
Eco31I GGTCTC 1 cut(s) 451
Eco53kI GAGCTC 1 cut(s) 166
EcoICRI GAGCTC 1 cut(s) 166
EcoT38I GRGCYC 1 cut(s) 168
FaeI CATG 3 cut(s) 442, 500, 661
FaqI GGGAC 1 cut(s) 25
FatI CATG 3 cut(s) 438, 496, 657
FokI GGATG 3 cut(s) 44, 110, 684
FriOI GRGCYC 1 cut(s) 168
HaeIII GGCC 2 cut(s) 105, 219
HapII CCGG 1 cut(s) 477
Hin1II CATG 3 cut(s) 442, 500, 661
HincII GTYRAC 1 cut(s) 436
HindII GTYRAC 1 cut(s) 436
HinfI GANTC 4 cut(s) 491, 562, 628, 683
HpaI GTTAAC 1 cut(s) 436
HpaII CCGG 1 cut(s) 477
HphI GGTGA 1 cut(s) 587
Hpy166II GTNNAC 2 cut(s) 88, 436
Hpy188I TCNGA 1 cut(s) 504
Hpy188III TCNNGA 3 cut(s) 253, 461, 484
Hpy8I GTNNAC 2 cut(s) 88, 436
HpyCH4III ACNGT 2 cut(s) 277, 354
HpyCH4IV ACGT 1 cut(s) 230
HpyCH4V TGCA 6 cut(s) 4, 226, 234, 292, 317, 442
HpyF10VI GCNNNNNNNGC 2 cut(s) 158, 641
HpyF3I CTNAG 1 cut(s) 162
HpySE526I ACGT 1 cut(s) 230
Hsp92II CATG 3 cut(s) 442, 500, 661
KspAI GTTAAC 1 cut(s) 436
Kzo9I GATC 1 cut(s) 499
LmnI GCTCC 1 cut(s) 370
LpnPI CCDG 9 cut(s) 55, 119, 201, 266, 327, 387, 428, 469, 490
MaeII ACGT 1 cut(s) 230
MalI GATC 1 cut(s) 501
MboI GATC 1 cut(s) 499
MboII GAAGA 3 cut(s) 179, 241, 685
MfeI CAATTG 2 cut(s) 208, 570
MhlI GDGCHC 1 cut(s) 168
MlsI TGGCCA 1 cut(s) 105
MluCI AATT 5 cut(s) 208, 326, 464, 538, 570
MluNI TGGCCA 1 cut(s) 105
MlyI GAGTC 1 cut(s) 637
MnlI CCTC 2 cut(s) 19, 351
Mox20I TGGCCA 1 cut(s) 105
MscI TGGCCA 1 cut(s) 105
MseI TTAA 6 cut(s) 27, 279, 329, 435, 543, 651
MslI CAYNNNNRTG 1 cut(s) 352
Msp20I TGGCCA 1 cut(s) 105
MspA1I CMGCKG 2 cut(s) 161, 590
MspCI CTTAAG 1 cut(s) 650
MspI CCGG 1 cut(s) 477
MunI CAATTG 2 cut(s) 208, 570
Mva1269I GAATGC 1 cut(s) 646
MwoI GCNNNNNNNGC 2 cut(s) 158, 641
NdeII GATC 1 cut(s) 499
NlaIII CATG 3 cut(s) 442, 500, 661
NlaIV GGNNCC 1 cut(s) 372
NspI RCATGY 2 cut(s) 442, 661
NspV TTCGAA 1 cut(s) 638
OliI CACNNNNGTG 1 cut(s) 352
PctI GAATGC 1 cut(s) 646
PfeI GAWTC 3 cut(s) 491, 562, 683
PflMI CCANNNNNTGG 2 cut(s) 197, 693
PleI GAGTC 1 cut(s) 636
PpsI GAGTC 1 cut(s) 636
Ppu21I YACGTR 1 cut(s) 231
Psp124BI GAGCTC 1 cut(s) 168
PspN4I GGNNCC 1 cut(s) 372
PvuII CAGCTG 2 cut(s) 161, 590
RsaI GTAC 3 cut(s) 214, 339, 536
RsaNI GTAC 3 cut(s) 213, 338, 535
RseI CAYNNNNRTG 1 cut(s) 352
SacI GAGCTC 1 cut(s) 168
SaqAI TTAA 6 cut(s) 27, 279, 329, 435, 543, 651
Sau3AI GATC 1 cut(s) 499
SchI GAGTC 1 cut(s) 637
SduI GDGCHC 1 cut(s) 168
SetI ASST 9 cut(s) 111, 163, 168, 233, 287, 432, 447, 592, 611
SfuI TTCGAA 1 cut(s) 638
SmiMI CAYNNNNRTG 1 cut(s) 352
SmlI CTYRAG 1 cut(s) 650
SmoI CTYRAG 1 cut(s) 650
Sse9I AATT 5 cut(s) 208, 326, 464, 538, 570
SstI GAGCTC 1 cut(s) 168
TaaI ACNGT 2 cut(s) 277, 354
TaiI ACGT 1 cut(s) 233
TaqI TCGA 3 cut(s) 168, 180, 638
TasI AATT 5 cut(s) 208, 326, 464, 538, 570
TatI WGTACW 2 cut(s) 212, 534
TfiI GAWTC 3 cut(s) 491, 562, 683
Tru1I TTAA 6 cut(s) 27, 279, 329, 435, 543, 651
Tru9I TTAA 6 cut(s) 27, 279, 329, 435, 543, 651
TspDTI ATGAA 1 cut(s) 696
Van91I CCANNNNNTGG 2 cut(s) 197, 693
Vha464I CTTAAG 1 cut(s) 650
XceI RCATGY 2 cut(s) 442, 661
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.