Prupe.4G236200_v2.0.a1

F-box kelch-repeat protein At3g06240-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
15303177 .. 15304170
994 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G236200.1

Sequence Viewer

Length: 648 bp
ATGTTACATAACGGCGGTTTCTATCTGGTTAACCCCGCAACAAGAGAATCCAAGAAACTTGCAGAGATACTAGATGTCGGAAAAAGGTGGAACTATGTCAGTGTCTACACGTTGAAAACTGGCTCTTGGCGAATGATTCAAAGGCGATATCCCTACAAATTTGACCGCATGCAGAAAGGGGTACTTCTGAATGGAGCCCTTCATTGGTTGTTGATGGACAGAGTTGGAGTTGAACATCGGTCATCGGTGATTATATCTTTCAATTTAGCGGAGGAGAATGTCCGAGAAATTCCACTACCACTTGCTTCTATTGATACGAGAGATTATATTGTTGGGGCCTTCAGAGATTGCTTATGTTTAATACATAGTGGTGCTGATGGAGGAATGCACAATGAGTTTTGGATCATGAAAGAATATGGCGTGAGGGAGTCTTGGACTAAAATAAGGAGCCCCATCCCATATTCTGCATTACGACACTCAGGTTTCTGGAAGAAAAGTCATGATCTCTTGGTGTTCAGGGACCGATTGCTTTTGTGCAATTCAAATGGTCCAAGATTTCGGAATATTTCGATCTCCGGATTACCTGAAGTTAAAGAAGTTGGGATTTACTTGGAGAGCCTTGTTTACCTGAATAATAATGTTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

216

Amino Acids

24.91

Weight (kDa)

9.36

Isoelectric Point (pI)

35.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 105
AccIII TCCGGA 1 cut(s) 575
AciI CCGC 4 cut(s) 15, 36, 166, 269
AclWI GGATC 1 cut(s) 410
AcsI RAATTY 2 cut(s) 158, 288
AcuI CTGAAG 2 cut(s) 325, 606
AfaI GTAC 1 cut(s) 183
AfiI CCNNNNNNNGG 1 cut(s) 204
AflIII ACRYGT 1 cut(s) 108
AgsI TTSAA 5 cut(s) 115, 140, 233, 262, 543
AlwI GGATC 1 cut(s) 410
Aor13HI TCCGGA 1 cut(s) 575
AoxI GGCC 1 cut(s) 336
ApoI RAATTY 2 cut(s) 158, 288
AspS9I GGNCC 3 cut(s) 336, 520, 548
AsuHPI GGTGA 1 cut(s) 259
AvaII GGWCC 2 cut(s) 520, 548
BanII GRGCYC 2 cut(s) 199, 452
BccI CCATC 3 cut(s) 208, 371, 461
BceAI ACGGC 1 cut(s) 28
BfaI CTAG 1 cut(s) 71
Bme18I GGWCC 2 cut(s) 520, 548
BmgT120I GGNCC 3 cut(s) 336, 520, 548
BmiI GGNNCC 4 cut(s) 196, 337, 449, 521
BsaWI WCCGGW 1 cut(s) 575
Bsc4I CCNNNNNNNGG 1 cut(s) 204
Bse1I ACTGG 1 cut(s) 124
BseAI TCCGGA 1 cut(s) 575
BseGI GGATG 1 cut(s) 453
BseLI CCNNNNNNNGG 1 cut(s) 204
BseMII CTCAG 1 cut(s) 492
BseNI ACTGG 1 cut(s) 124
BseRI GAGGAG 1 cut(s) 287
BshFI GGCC 1 cut(s) 338
BsiSI CCGG 1 cut(s) 576
BslFI GGGAC 1 cut(s) 533
BslI CCNNNNNNNGG 1 cut(s) 204
BsmFI GGGAC 1 cut(s) 533
BsmI GAATGC 1 cut(s) 390
BsnI GGCC 1 cut(s) 338
Bsp1286I GDGCHC 2 cut(s) 199, 452
Bsp13I TCCGGA 1 cut(s) 575
Bsp143I GATC 3 cut(s) 402, 502, 570
BspACI CCGC 4 cut(s) 15, 36, 166, 269
BspANI GGCC 1 cut(s) 338
BspCNI CTCAG 1 cut(s) 491
BspEI TCCGGA 1 cut(s) 575
BspHI TCATGA 2 cut(s) 405, 499
BspLI GGNNCC 4 cut(s) 196, 337, 449, 521
BspPI GGATC 1 cut(s) 410
BsrI ACTGG 1 cut(s) 124
BssMI GATC 3 cut(s) 402, 502, 570
BstC8I GCNNGC 1 cut(s) 170
BstDEI CTNAG 1 cut(s) 478
BstF5I GGATG 1 cut(s) 453
BstKTI GATC 3 cut(s) 405, 505, 573
BstMBI GATC 3 cut(s) 402, 502, 570
BstNSI RCATGY 1 cut(s) 172
BsuRI GGCC 1 cut(s) 338
BtsCI GGATG 1 cut(s) 453
BtsIMutI CAGTG 1 cut(s) 106
Cac8I GCNNGC 1 cut(s) 170
CciI TCATGA 2 cut(s) 405, 499
Cfr13I GGNCC 3 cut(s) 336, 520, 548
Csp6I GTAC 1 cut(s) 182
CviAII CATG 3 cut(s) 169, 406, 500
CviJI RGCY 5 cut(s) 123, 197, 338, 450, 618
CviKI_1 RGCY 5 cut(s) 123, 197, 338, 450, 618
CviQI GTAC 1 cut(s) 182
DdeI CTNAG 1 cut(s) 478
DpnI GATC 3 cut(s) 404, 504, 572
DpnII GATC 3 cut(s) 402, 502, 570
Eco24I GRGCYC 2 cut(s) 199, 452
Eco32I GATATC 1 cut(s) 149
Eco47I GGWCC 2 cut(s) 520, 548
Eco57I CTGAAG 2 cut(s) 325, 606
EcoO109I RGGNCCY 1 cut(s) 336
EcoRV GATATC 1 cut(s) 149
EcoT38I GRGCYC 2 cut(s) 199, 452
FaeI CATG 3 cut(s) 172, 409, 503
FalI AAGNNNNNCTT 2 cut(s) 168, 200
FaqI GGGAC 1 cut(s) 533
FatI CATG 3 cut(s) 168, 405, 499
FauI CCCGC 1 cut(s) 43
FblI GTMKAC 1 cut(s) 105
FokI GGATG 1 cut(s) 440
FriOI GRGCYC 2 cut(s) 199, 452
FspBI CTAG 1 cut(s) 71
HaeIII GGCC 1 cut(s) 338
HapII CCGG 1 cut(s) 576
Hin1II CATG 3 cut(s) 172, 409, 503
HincII GTYRAC 2 cut(s) 31, 643
HindII GTYRAC 2 cut(s) 31, 643
HinfI GANTC 3 cut(s) 47, 136, 428
HpaI GTTAAC 1 cut(s) 31
HpaII CCGG 1 cut(s) 576
HphI GGTGA 1 cut(s) 259
Hpy166II GTNNAC 4 cut(s) 31, 106, 625, 643
Hpy188I TCNGA 5 cut(s) 80, 189, 284, 344, 561
Hpy188III TCNNGA 4 cut(s) 406, 487, 500, 576
Hpy8I GTNNAC 4 cut(s) 31, 106, 625, 643
HpyAV CCTTC 2 cut(s) 209, 349
HpyCH4IV ACGT 1 cut(s) 110
HpyCH4V TGCA 5 cut(s) 62, 172, 388, 467, 537
HpyF3I CTNAG 1 cut(s) 478
HpySE526I ACGT 1 cut(s) 110
Hsp92II CATG 3 cut(s) 172, 409, 503
Kpn2I TCCGGA 1 cut(s) 575
KspAI GTTAAC 1 cut(s) 31
Kzo9I GATC 3 cut(s) 402, 502, 570
LmnI GCTCC 2 cut(s) 194, 447
LpnPI CCDG 8 cut(s) 11, 105, 465, 472, 502, 589, 597, 641
MaeI CTAG 1 cut(s) 71
MaeII ACGT 1 cut(s) 110
MaeIII GTNAC 1 cut(s) 3
MalI GATC 3 cut(s) 404, 504, 572
MboI GATC 3 cut(s) 402, 502, 570
MboII GAAGA 1 cut(s) 502
MhlI GDGCHC 2 cut(s) 199, 452
MluCI AATT 4 cut(s) 158, 262, 288, 538
MlyI GAGTC 1 cut(s) 437
MmeI TCCRAC 2 cut(s) 58, 205
MnlI CCTC 3 cut(s) 265, 374, 417
MroI TCCGGA 1 cut(s) 575
MseI TTAA 3 cut(s) 30, 359, 591
MslI CAYNNNNRTG 1 cut(s) 369
MspI CCGG 1 cut(s) 576
Mva1269I GAATGC 1 cut(s) 390
NdeII GATC 3 cut(s) 402, 502, 570
NlaIII CATG 3 cut(s) 172, 409, 503
NlaIV GGNNCC 4 cut(s) 196, 337, 449, 521
NspI RCATGY 1 cut(s) 172
PaeI GCATGC 1 cut(s) 172
PagI TCATGA 2 cut(s) 405, 499
PctI GAATGC 1 cut(s) 390
PfeI GAWTC 2 cut(s) 47, 136
PleI GAGTC 1 cut(s) 436
PpsI GAGTC 1 cut(s) 436
PspN4I GGNNCC 4 cut(s) 196, 337, 449, 521
PspPI GGNCC 3 cut(s) 336, 520, 548
RsaI GTAC 1 cut(s) 183
RsaNI GTAC 1 cut(s) 182
RseI CAYNNNNRTG 1 cut(s) 369
SaqAI TTAA 3 cut(s) 30, 359, 591
Sau3AI GATC 3 cut(s) 402, 502, 570
Sau96I GGNCC 3 cut(s) 336, 520, 548
SchI GAGTC 1 cut(s) 437
SduI GDGCHC 2 cut(s) 199, 452
SetI ASST 5 cut(s) 89, 113, 484, 586, 630
SinI GGWCC 2 cut(s) 520, 548
SmiMI CAYNNNNRTG 1 cut(s) 369
SphI GCATGC 1 cut(s) 172
Sse9I AATT 4 cut(s) 158, 262, 288, 538
SsiI CCGC 4 cut(s) 15, 36, 166, 269
SspI AATATT 1 cut(s) 565
SspMI CTAG 1 cut(s) 71
TaiI ACGT 1 cut(s) 113
TaqI TCGA 1 cut(s) 569
TaqII GACCGA 2 cut(s) 228, 537
TasI AATT 4 cut(s) 158, 262, 288, 538
TfiI GAWTC 2 cut(s) 47, 136
Tru1I TTAA 3 cut(s) 30, 359, 591
Tru9I TTAA 3 cut(s) 30, 359, 591
TscAI CASTG 1 cut(s) 106
TspDTI ATGAA 2 cut(s) 191, 422
TspRI CASTG 1 cut(s) 106
VpaK11BI GGWCC 2 cut(s) 520, 548
XapI RAATTY 2 cut(s) 158, 288
XceI RCATGY 1 cut(s) 172
XmiI GTMKAC 1 cut(s) 105
XspI CTAG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.