Rmu_sc0004571.1_g000004

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004571.1
OG0000111
Physical Location & Seq
Forward (+)
9738 .. 10727
990 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004571.1_g000004.1.cds

Sequence Viewer

Length: 990 bp
atgcatttcaacaaagccattgagaatgaggatttgttttatcgaagaagaaaactgttattcactgataaacaaggtgattcactttactctttcgacctcgatgagtttcttgagcattatcatgatcatccatttctgaatggtcttggtaacagtaacaatgttaatgttggcgttattggtgatgattatgatggtgatctagttgtcactagactcaaactacccgattgtggtggggcctctagatatcctcgtgagagttggaccttggtgactttctgctgtggcctagtgttatttaggttggattcggacttaaatgtggctaacccagcattgaggaaatataagaaactgccagctccatctgcagagttgggttcgaagttatatgtggctaacccaaggaaatataataaactgtcaggtcctggaggcttcttctgttaccgattcgggttcggttttgatcactccactgatgatttcaaagtgattagatcgaggacctcgaaatatggagtcgattttattgtccatgcattcaaaactggttcttggcgacgaattcaaaggcgatttccctacataaattttcgtcctcggactgggataatgcttaatggaggacttcattggttgatgaggagactgaaaggtgactcatgggtgattgtatctctctctttagcagaagaggaggttcgggaaattccactgccgcttggtttagatgtgggaatcttcgatttcatggaattgggactgttctacacagacagcctctgtatagctcattcatttattacttttggccatgtttgtttcgcggaaaatggacattgggaaaggaaatcctttcctttcctgcgtttggggacagccaaggaagggaaacactttcccaaatcaaaggaaaaagtggaggaatttggttccctcccctcccctccggaaacactttcccaaaggaaaggaaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

329

Amino Acids

37.73

Weight (kDa)

8.99

Isoelectric Point (pI)

38.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 836
AccIII TCCGGA 1 cut(s) 958
AciI CCGC 2 cut(s) 728, 836
AcoI YGGCCR 1 cut(s) 820
AcsI RAATTY 4 cut(s) 573, 598, 717, 935
AfiI CCNNNNNNNGG 4 cut(s) 236, 614, 880, 897
AgsI TTSAA 4 cut(s) 10, 496, 553, 578
AjnI CCWGG 1 cut(s) 436
AluBI AGCT 2 cut(s) 368, 800
AluI AGCT 2 cut(s) 368, 800
Alw26I GTCTC 1 cut(s) 649
AlwNI CAGNNNCTG 2 cut(s) 437, 792
Aor13HI TCCGGA 1 cut(s) 958
AoxI GGCC 3 cut(s) 243, 292, 820
ApoI RAATTY 4 cut(s) 573, 598, 717, 935
AspS9I GGNCC 4 cut(s) 243, 270, 434, 513
AsuHPI GGTGA 6 cut(s) 89, 197, 212, 289, 677, 688
AsuII TTCGAA 1 cut(s) 389
AvaII GGWCC 3 cut(s) 270, 434, 513
BalI TGGCCA 1 cut(s) 822
BauI CACGAG 1 cut(s) 258
BccI CCATC 2 cut(s) 191, 379
BciT130I CCWGG 1 cut(s) 438
BclI TGATCA 2 cut(s) 127, 475
BcoDI GTCTC 1 cut(s) 649
BfaI CTAG 4 cut(s) 206, 216, 249, 296
BfmI CTRYAG 1 cut(s) 375
BisI GCNGC 1 cut(s) 728
BlsI GCNGC 1 cut(s) 729
Bme1390I CCNGG 1 cut(s) 438
Bme18I GGWCC 3 cut(s) 270, 434, 513
BmgT120I GGNCC 4 cut(s) 243, 270, 434, 513
BmiI GGNNCC 2 cut(s) 244, 943
BmrFI CCNGG 1 cut(s) 438
BmrI ACTGGG 1 cut(s) 624
BmuI ACTGGG 1 cut(s) 624
BpmI CTGGAG 1 cut(s) 459
Bpu14I TTCGAA 1 cut(s) 389
BpuEI CTTGAG 1 cut(s) 134
BsaBI GATNNNNATC 1 cut(s) 201
BsaJI CCNNGG 4 cut(s) 273, 410, 608, 891
BsaWI WCCGGW 1 cut(s) 958
Bsc4I CCNNNNNNNGG 4 cut(s) 236, 614, 880, 897
Bse1I ACTGG 2 cut(s) 562, 619
Bse8I GATNNNNATC 1 cut(s) 201
BseAI TCCGGA 1 cut(s) 958
BseBI CCWGG 1 cut(s) 438
BseDI CCNNGG 4 cut(s) 273, 410, 608, 891
BseGI GGATG 1 cut(s) 130
BseJI GATNNNNATC 1 cut(s) 201
BseLI CCNNNNNNNGG 4 cut(s) 236, 614, 880, 897
BseNI ACTGG 2 cut(s) 562, 619
BseRI GAGGAG 2 cut(s) 667, 719
BseYI CCCAGC 1 cut(s) 337
Bsh1236I CGCG 1 cut(s) 836
BshFI GGCC 3 cut(s) 245, 294, 822
BsiSI CCGG 1 cut(s) 959
BslFI GGGAC 2 cut(s) 783, 898
BslI CCNNNNNNNGG 4 cut(s) 236, 614, 880, 897
BsmAI GTCTC 1 cut(s) 649
BsmFI GGGAC 2 cut(s) 783, 898
BsmI GAATGC 1 cut(s) 548
BsnI GGCC 3 cut(s) 245, 294, 822
Bsp119I TTCGAA 1 cut(s) 389
Bsp13I TCCGGA 1 cut(s) 958
Bsp143I GATC 4 cut(s) 127, 202, 475, 506
BspACI CCGC 2 cut(s) 728, 836
BspANI GGCC 3 cut(s) 245, 294, 822
BspEI TCCGGA 1 cut(s) 958
BspFNI CGCG 1 cut(s) 836
BspHI TCATGA 1 cut(s) 124
BspLI GGNNCC 2 cut(s) 244, 943
BspMAI CTGCAG 1 cut(s) 379
BspT104I TTCGAA 1 cut(s) 389
BsrI ACTGG 2 cut(s) 562, 619
BssECI CCNNGG 4 cut(s) 273, 410, 608, 891
BssMI GATC 4 cut(s) 127, 202, 475, 506
BssSI CACGAG 1 cut(s) 258
BssT1I CCWWGG 3 cut(s) 273, 410, 891
Bst2BI CACGAG 1 cut(s) 258
Bst2UI CCWGG 1 cut(s) 438
Bst4CI ACNGT 4 cut(s) 57, 158, 429, 774
Bst6I CTCTTC 1 cut(s) 696
BstBI TTCGAA 1 cut(s) 389
BstC8I GCNNGC 1 cut(s) 366
BstF5I GGATG 1 cut(s) 130
BstFNI CGCG 1 cut(s) 836
BstKTI GATC 4 cut(s) 130, 205, 478, 509
BstMAI GTCTC 1 cut(s) 649
BstMBI GATC 4 cut(s) 127, 202, 475, 506
BstMWI GCNNNNNNNGC 2 cut(s) 338, 374
BstNI CCWGG 1 cut(s) 438
BstSCI CCNGG 1 cut(s) 436
BstSFI CTRYAG 1 cut(s) 375
BstUI CGCG 1 cut(s) 836
BsuRI GGCC 3 cut(s) 245, 294, 822
BtsCI GGATG 1 cut(s) 130
BtsI GCAGTG 1 cut(s) 722
BtsIMutI CAGTG 3 cut(s) 63, 483, 722
Cac8I GCNNGC 1 cut(s) 366
CaiI CAGNNNCTG 2 cut(s) 437, 792
CciI TCATGA 1 cut(s) 124
Cfr13I GGNCC 4 cut(s) 243, 270, 434, 513
CviAII CATG 5 cut(s) 125, 545, 672, 760, 824
DpnI GATC 4 cut(s) 129, 204, 477, 508
DpnII GATC 4 cut(s) 127, 202, 475, 506
EaeI YGGCCR 1 cut(s) 820
Eam1104I CTCTTC 1 cut(s) 696
EarI CTCTTC 1 cut(s) 696
Eco130I CCWWGG 3 cut(s) 273, 410, 891
Eco32I GATATC 1 cut(s) 254
Eco47I GGWCC 3 cut(s) 270, 434, 513
EcoO109I RGGNCCY 3 cut(s) 243, 434, 513
EcoRI GAATTC 1 cut(s) 573
EcoRII CCWGG 1 cut(s) 436
EcoRV GATATC 1 cut(s) 254
EcoT14I CCWWGG 3 cut(s) 273, 410, 891
EcoT22I ATGCAT 2 cut(s) 6, 550
ErhI CCWWGG 3 cut(s) 273, 410, 891
FaeI CATG 5 cut(s) 128, 548, 675, 763, 827
FaqI GGGAC 2 cut(s) 783, 898
FatI CATG 5 cut(s) 124, 544, 671, 759, 823
FbaI TGATCA 2 cut(s) 127, 475
Fnu4HI GCNGC 1 cut(s) 728
FokI GGATG 1 cut(s) 117
Fsp4HI GCNGC 1 cut(s) 728
FspBI CTAG 4 cut(s) 206, 216, 249, 296
GluI GCNGC 1 cut(s) 728
GsaI CCCAGC 1 cut(s) 341
GsuI CTGGAG 1 cut(s) 459
HaeIII GGCC 3 cut(s) 245, 294, 822
HapII CCGG 1 cut(s) 959
Hin1II CATG 5 cut(s) 128, 548, 675, 763, 827
HinfI GANTC 7 cut(s) 80, 219, 314, 459, 528, 668, 747
HpaII CCGG 1 cut(s) 959
HphI GGTGA 6 cut(s) 89, 197, 212, 289, 677, 688
Hpy188I TCNGA 3 cut(s) 141, 319, 612
Hpy188III TCNNGA 6 cut(s) 113, 125, 249, 260, 713, 959
Hpy99I CGWCG 1 cut(s) 573
HpyAV CCTTC 1 cut(s) 890
HpyCH4III ACNGT 4 cut(s) 57, 158, 429, 774
HpyCH4V TGCA 3 cut(s) 4, 377, 548
HpyF10VI GCNNNNNNNGC 2 cut(s) 338, 374
Hsp92II CATG 5 cut(s) 128, 548, 675, 763, 827
Kpn2I TCCGGA 1 cut(s) 958
Ksp22I TGATCA 2 cut(s) 127, 475
Kzo9I GATC 4 cut(s) 127, 202, 475, 506
LmnI GCTCC 1 cut(s) 373
LpnPI CCDG 9 cut(s) 351, 378, 417, 423, 450, 543, 600, 887, 972
MaeI CTAG 4 cut(s) 206, 216, 249, 296
MaeIII GTNAC 6 cut(s) 152, 158, 211, 277, 452, 665
MalI GATC 4 cut(s) 129, 204, 477, 508
MboI GATC 4 cut(s) 127, 202, 475, 506
MboII GAAGA 5 cut(s) 57, 60, 439, 713, 742
MlsI TGGCCA 1 cut(s) 822
MluCI AATT 5 cut(s) 573, 598, 717, 764, 935
MluNI TGGCCA 1 cut(s) 822
MlyI GAGTC 3 cut(s) 213, 537, 662
MmeI TCCRAC 2 cut(s) 248, 291
Mox20I TGGCCA 1 cut(s) 822
Mph1103I ATGCAT 2 cut(s) 6, 550
MroI TCCGGA 1 cut(s) 958
MscI TGGCCA 1 cut(s) 822
MseI TTAA 3 cut(s) 168, 323, 627
MslI CAYNNNNRTG 1 cut(s) 123
Msp20I TGGCCA 1 cut(s) 822
MspI CCGG 1 cut(s) 959
MspR9I CCNGG 1 cut(s) 438
Mva1269I GAATGC 1 cut(s) 548
MvaI CCWGG 1 cut(s) 438
MvnI CGCG 1 cut(s) 836
MwoI GCNNNNNNNGC 2 cut(s) 338, 374
NdeII GATC 4 cut(s) 127, 202, 475, 506
NlaIII CATG 5 cut(s) 128, 548, 675, 763, 827
NlaIV GGNNCC 2 cut(s) 244, 943
NmuCI GTSAC 3 cut(s) 211, 277, 665
NsiI ATGCAT 2 cut(s) 6, 550
NspV TTCGAA 1 cut(s) 389
PagI TCATGA 1 cut(s) 124
PcsI WCGNNNNNNNCGW 1 cut(s) 515
PctI GAATGC 1 cut(s) 548
PfeI GAWTC 4 cut(s) 80, 314, 459, 747
PfoI TCCNGGA 1 cut(s) 436
PkrI GCNGC 1 cut(s) 729
PleI GAGTC 3 cut(s) 213, 536, 662
PpsI GAGTC 3 cut(s) 213, 536, 662
PpuMI RGGWCCY 2 cut(s) 434, 513
Psp5II RGGWCCY 2 cut(s) 434, 513
Psp6I CCWGG 1 cut(s) 436
PspFI CCCAGC 1 cut(s) 337
PspGI CCWGG 1 cut(s) 436
PspN4I GGNNCC 2 cut(s) 244, 943
PspPI GGNCC 4 cut(s) 243, 270, 434, 513
PspPPI RGGWCCY 2 cut(s) 434, 513
PstI CTGCAG 1 cut(s) 379
PstNI CAGNNNCTG 2 cut(s) 437, 792
RseI CAYNNNNRTG 1 cut(s) 123
SaqAI TTAA 3 cut(s) 168, 323, 627
SatI GCNGC 1 cut(s) 728
Sau3AI GATC 4 cut(s) 127, 202, 475, 506
Sau96I GGNCC 4 cut(s) 243, 270, 434, 513
SchI GAGTC 3 cut(s) 213, 537, 662
ScrFI CCNGG 1 cut(s) 438
SfcI CTRYAG 1 cut(s) 375
SfuI TTCGAA 1 cut(s) 389
SinI GGWCC 3 cut(s) 270, 434, 513
SmiMI CAYNNNNRTG 1 cut(s) 123
SmlI CTYRAG 1 cut(s) 113
SmoI CTYRAG 1 cut(s) 113
Sse9I AATT 5 cut(s) 573, 598, 717, 764, 935
SsiI CCGC 2 cut(s) 728, 836
SspMI CTAG 4 cut(s) 206, 216, 249, 296
StyD4I CCNGG 1 cut(s) 436
StyI CCWWGG 3 cut(s) 273, 410, 891
TaaI ACNGT 4 cut(s) 57, 158, 429, 774
TaqI TCGA 8 cut(s) 43, 96, 102, 389, 509, 518, 531, 753
TasI AATT 5 cut(s) 573, 598, 717, 764, 935
TauI GCSGC 1 cut(s) 730
TfiI GAWTC 4 cut(s) 80, 314, 459, 747
Tru1I TTAA 3 cut(s) 168, 323, 627
Tru9I TTAA 3 cut(s) 168, 323, 627
TscAI CASTG 3 cut(s) 70, 490, 729
TseFI GTSAC 3 cut(s) 211, 277, 665
Tsp45I GTSAC 3 cut(s) 211, 277, 665
TspDTI ATGAA 3 cut(s) 629, 748, 795
TspRI CASTG 3 cut(s) 70, 490, 729
VpaK11BI GGWCC 3 cut(s) 270, 434, 513
XapI RAATTY 4 cut(s) 573, 598, 717, 935
XbaI TCTAGA 1 cut(s) 248
XspI CTAG 4 cut(s) 206, 216, 249, 296
Zsp2I ATGCAT 2 cut(s) 6, 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.