Rmu_sc0018952.1_g000008

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0018952.1
OG0000111
Physical Location & Seq
Forward (+)
19850 .. 20518
669 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0018952.1_g000008.1.cds

Sequence Viewer

Length: 669 bp
atgagagtaccagattgccccatgtcaagccatgctgatcctccagaggaagtgggttatgatgtacatggttttggttatgctccttctgtcaaggattacatgtttgttaagatttataagggccgcaatgtgctcatcttttcactgaaaaacaagtcatggaaaagtgttcaggactttccttacaaacatcttttgaatgatccagggacgcctctcaacggagctgtccactggttgtgcatgggccttgatcatcttcctgtaattgctgctttagatttagcagaagagaagttctcaggcttatcgccacctgaatctattgtagattctaataggtatacacctggcgtcttaagggactgtctttgtttgctacaccacaatgatcataacaggcagcgtatattctggattatgaaagagtatggtgtgaaggagtcatggaccaagattttgattgcggaaccctttttctctttgcagccgttatgttactggaagaataccaagatagtagtggcaagaaaccgtagggaaatacttctgttcagtacgagggatggaacttgtaaaaatttattggcaaatggcctccaggttccgttctatgtggatgtgtatgtggagagtcttgtttctccaaactttcggctgaactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

222

Amino Acids

25.5

Weight (kDa)

8.17

Isoelectric Point (pI)

46.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 120
AccI GTMKAC 1 cut(s) 347
AciI CCGC 2 cut(s) 127, 470
AclWI GGATC 2 cut(s) 32, 200
AcsI RAATTY 1 cut(s) 583
AcyI GRCGYC 2 cut(s) 215, 357
AfaI GTAC 3 cut(s) 9, 66, 562
AfiI CCNNNNNNNGG 1 cut(s) 224
AflII CTTAAG 1 cut(s) 361
AflIII ACRYGT 1 cut(s) 102
AgsI TTSAA 1 cut(s) 202
AjnI CCWGG 3 cut(s) 208, 352, 603
AluBI AGCT 1 cut(s) 230
AluI AGCT 1 cut(s) 230
Alw21I GWGCWC 1 cut(s) 138
AlwI GGATC 2 cut(s) 32, 200
AoxI GGCC 3 cut(s) 124, 250, 598
ApeKI GCWGC 3 cut(s) 275, 406, 490
ApoI RAATTY 1 cut(s) 583
ArsI GACNNNNNNTTYG 2 cut(s) 445, 477
Asp700I GAANNNNTTC 1 cut(s) 549
AspS9I GGNCC 3 cut(s) 124, 250, 453
AvaII GGWCC 1 cut(s) 453
Bbv12I GWGCWC 1 cut(s) 138
BbvI GCAGC 3 cut(s) 262, 418, 502
BccI CCATC 1 cut(s) 563
BceAI ACGGC 1 cut(s) 478
BciT130I CCWGG 3 cut(s) 210, 354, 605
BclI TGATCA 2 cut(s) 256, 394
BfrI CTTAAG 1 cut(s) 361
BisI GCNGC 4 cut(s) 127, 276, 407, 491
BlsI GCNGC 4 cut(s) 128, 277, 408, 492
Bme1390I CCNGG 3 cut(s) 210, 354, 605
Bme18I GGWCC 1 cut(s) 453
BmgT120I GGNCC 3 cut(s) 124, 250, 453
BmiI GGNNCC 2 cut(s) 474, 609
BmrFI CCNGG 3 cut(s) 210, 354, 605
BplI GAGNNNNNCTC 2 cut(s) 287, 319
BpmI CTGGAG 2 cut(s) 27, 587
BsaHI GRCGYC 2 cut(s) 215, 357
BsaJI CCNNGG 1 cut(s) 209
Bsc4I CCNNNNNNNGG 1 cut(s) 224
Bse1I ACTGG 2 cut(s) 242, 509
Bse3DI GCAATG 1 cut(s) 136
BseBI CCWGG 3 cut(s) 210, 354, 605
BseDI CCNNGG 1 cut(s) 209
BseGI GGATG 2 cut(s) 574, 628
BseLI CCNNNNNNNGG 1 cut(s) 224
BseMI GCAATG 1 cut(s) 136
BseMII CTCAG 1 cut(s) 318
BseNI ACTGG 2 cut(s) 242, 509
BseXI GCAGC 3 cut(s) 262, 418, 502
BshFI GGCC 3 cut(s) 126, 252, 600
BsiHKAI GWGCWC 1 cut(s) 138
BslFI GGGAC 2 cut(s) 226, 380
BslI CCNNNNNNNGG 1 cut(s) 224
BsmFI GGGAC 2 cut(s) 226, 380
BsnI GGCC 3 cut(s) 126, 252, 600
Bsp1286I GDGCHC 1 cut(s) 138
Bsp1407I TGTACA 1 cut(s) 64
Bsp143I GATC 4 cut(s) 37, 205, 256, 394
BspACI CCGC 2 cut(s) 127, 470
BspANI GGCC 3 cut(s) 126, 252, 600
BspCNI CTCAG 1 cut(s) 317
BspLI GGNNCC 2 cut(s) 474, 609
BspPI GGATC 2 cut(s) 32, 200
BspTI CTTAAG 1 cut(s) 361
BsrDI GCAATG 1 cut(s) 136
BsrGI TGTACA 1 cut(s) 64
BsrI ACTGG 2 cut(s) 242, 509
BssECI CCNNGG 1 cut(s) 209
BssMI GATC 4 cut(s) 37, 205, 256, 394
BssNAI GTATAC 1 cut(s) 348
BssNI GRCGYC 2 cut(s) 215, 357
Bst1107I GTATAC 1 cut(s) 348
Bst2UI CCWGG 3 cut(s) 210, 354, 605
Bst4CI ACNGT 2 cut(s) 371, 539
Bst6I CTCTTC 1 cut(s) 288
BstACI GRCGYC 2 cut(s) 215, 357
BstAFI CTTAAG 1 cut(s) 361
BstAUI TGTACA 1 cut(s) 64
BstDEI CTNAG 1 cut(s) 304
BstF5I GGATG 2 cut(s) 574, 628
BstKTI GATC 4 cut(s) 40, 208, 259, 397
BstMBI GATC 4 cut(s) 37, 205, 256, 394
BstNI CCWGG 3 cut(s) 210, 354, 605
BstNSI RCATGY 1 cut(s) 106
BstSCI CCNGG 3 cut(s) 208, 352, 603
BstV1I GCAGC 3 cut(s) 262, 418, 502
BstZ17I GTATAC 1 cut(s) 348
BsuRI GGCC 3 cut(s) 126, 252, 600
BtsCI GGATG 2 cut(s) 574, 628
BtsIMutI CAGTG 2 cut(s) 146, 235
Cfr13I GGNCC 3 cut(s) 124, 250, 453
CseI GACGC 2 cut(s) 223, 346
Csp6I GTAC 3 cut(s) 8, 65, 561
CviAII CATG 7 cut(s) 22, 32, 68, 103, 162, 247, 450
CviJI RGCY 8 cut(s) 30, 126, 230, 252, 309, 493, 600, 661
CviKI_1 RGCY 8 cut(s) 30, 126, 230, 252, 309, 493, 600, 661
CviQI GTAC 3 cut(s) 8, 65, 561
DdeI CTNAG 1 cut(s) 304
DpnI GATC 4 cut(s) 39, 207, 258, 396
DpnII GATC 4 cut(s) 37, 205, 256, 394
Eam1104I CTCTTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 288
Eco47I GGWCC 1 cut(s) 453
EcoRII CCWGG 3 cut(s) 208, 352, 603
FaeI CATG 7 cut(s) 25, 35, 71, 106, 165, 250, 453
FaqI GGGAC 2 cut(s) 226, 380
FatI CATG 7 cut(s) 21, 31, 67, 102, 161, 246, 449
FbaI TGATCA 2 cut(s) 256, 394
FblI GTMKAC 1 cut(s) 347
Fnu4HI GCNGC 4 cut(s) 127, 276, 407, 491
FokI GGATG 2 cut(s) 581, 635
Fsp4HI GCNGC 4 cut(s) 127, 276, 407, 491
GluI GCNGC 4 cut(s) 127, 276, 407, 491
GsuI CTGGAG 2 cut(s) 27, 587
HaeIII GGCC 3 cut(s) 126, 252, 600
HgaI GACGC 2 cut(s) 223, 346
Hin1I GRCGYC 2 cut(s) 215, 357
Hin1II CATG 7 cut(s) 25, 35, 71, 106, 165, 250, 453
HinfI GANTC 4 cut(s) 323, 335, 446, 637
Hpy166II GTNNAC 2 cut(s) 235, 348
Hpy188III TCNNGA 3 cut(s) 44, 176, 418
Hpy8I GTNNAC 2 cut(s) 235, 348
HpyAV CCTTC 2 cut(s) 96, 436
HpyCH4III ACNGT 2 cut(s) 371, 539
HpyCH4V TGCA 2 cut(s) 246, 490
HpyF3I CTNAG 1 cut(s) 304
Hsp92I GRCGYC 2 cut(s) 215, 357
Hsp92II CATG 7 cut(s) 25, 35, 71, 106, 165, 250, 453
Ksp22I TGATCA 2 cut(s) 256, 394
Kzo9I GATC 4 cut(s) 37, 205, 256, 394
LmnI GCTCC 2 cut(s) 88, 227
Lsp1109I GCAGC 3 cut(s) 262, 418, 502
MaeIII GTNAC 1 cut(s) 500
MalI GATC 4 cut(s) 39, 207, 258, 396
MboI GATC 4 cut(s) 37, 205, 256, 394
MboII GAAGA 3 cut(s) 254, 305, 520
MhlI GDGCHC 1 cut(s) 138
MluCI AATT 2 cut(s) 270, 583
MlyI GAGTC 2 cut(s) 455, 646
MnlI CCTC 5 cut(s) 40, 51, 228, 558, 611
MroXI GAANNNNTTC 1 cut(s) 549
MseI TTAA 2 cut(s) 111, 362
MslI CAYNNNNRTG 1 cut(s) 390
MspCI CTTAAG 1 cut(s) 361
MspR9I CCNGG 3 cut(s) 210, 354, 605
MvaI CCWGG 3 cut(s) 210, 354, 605
NdeII GATC 4 cut(s) 37, 205, 256, 394
NlaIII CATG 7 cut(s) 25, 35, 71, 106, 165, 250, 453
NlaIV GGNNCC 2 cut(s) 474, 609
NspI RCATGY 1 cut(s) 106
PciI ACATGT 1 cut(s) 102
PdmI GAANNNNTTC 1 cut(s) 549
PfeI GAWTC 2 cut(s) 323, 335
PkrI GCNGC 4 cut(s) 128, 277, 408, 492
PleI GAGTC 2 cut(s) 454, 645
PpsI GAGTC 2 cut(s) 454, 645
PscI ACATGT 1 cut(s) 102
PsiI TTATAA 1 cut(s) 120
Psp6I CCWGG 3 cut(s) 208, 352, 603
PspGI CCWGG 3 cut(s) 208, 352, 603
PspN4I GGNNCC 2 cut(s) 474, 609
PspPI GGNCC 3 cut(s) 124, 250, 453
RsaI GTAC 3 cut(s) 9, 66, 562
RsaNI GTAC 3 cut(s) 8, 65, 561
RseI CAYNNNNRTG 1 cut(s) 390
SaqAI TTAA 2 cut(s) 111, 362
SatI GCNGC 4 cut(s) 127, 276, 407, 491
Sau3AI GATC 4 cut(s) 37, 205, 256, 394
Sau96I GGNCC 3 cut(s) 124, 250, 453
SchI GAGTC 2 cut(s) 455, 646
ScrFI CCNGG 3 cut(s) 210, 354, 605
SduI GDGCHC 1 cut(s) 138
SetI ASST 5 cut(s) 232, 322, 347, 355, 609
SinI GGWCC 1 cut(s) 453
SmiMI CAYNNNNRTG 1 cut(s) 390
SmlI CTYRAG 1 cut(s) 361
SmoI CTYRAG 1 cut(s) 361
Sse9I AATT 2 cut(s) 270, 583
SsiI CCGC 2 cut(s) 127, 470
StyD4I CCNGG 3 cut(s) 208, 352, 603
TaaI ACNGT 2 cut(s) 371, 539
TasI AATT 2 cut(s) 270, 583
TatI WGTACW 1 cut(s) 64
TauI GCSGC 1 cut(s) 129
TfiI GAWTC 2 cut(s) 323, 335
Tru1I TTAA 2 cut(s) 111, 362
Tru9I TTAA 2 cut(s) 111, 362
TscAI CASTG 2 cut(s) 153, 242
TseI GCWGC 3 cut(s) 275, 406, 490
TspDTI ATGAA 1 cut(s) 440
TspGWI ACGGA 2 cut(s) 240, 600
TspRI CASTG 2 cut(s) 153, 242
Vha464I CTTAAG 1 cut(s) 361
VpaK11BI GGWCC 1 cut(s) 453
XapI RAATTY 1 cut(s) 583
XceI RCATGY 1 cut(s) 106
XcmI CCANNNNNNNNNTGG 1 cut(s) 523
XmiI GTMKAC 1 cut(s) 347
XmnI GAANNNNTTC 1 cut(s) 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.