Rmu_sc0000792.1_g000018

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000792.1
OG0000111
Physical Location & Seq
Forward (+)
91818 .. 92831
1014 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000792.1_g000018.1.cds

Sequence Viewer

Length: 1014 bp
atggaagaccagggccagtttaaagccattgaggataagggacagcgtcttgtatttactgaccatgcacgtaaacgcctctactctttggaccttgttcaattcctcaaccagaatcttgcacttttgaggaataataatgttgatggtttggatttagtagcaaaacccactgagctcgactttgttcgtcacaatattggaagtggttgggttcccgttgtcctttcctgcaatagcttcttgatgtgcaggtcagattctgggttccatttgataaacccttttaccaaggaatggaagaaagtaccaaagacaccactaacaaagaagcctttttcttgggagctatatgggtttggatttgatgactccactaatcaatacaaggtgattgaagggaagggctgcactgatggatttgtgtttagtgtctatgcatctttgactgattcttggcgaaagattgactgcctatatccctacaaacagactcgtgtttgtaggaaggatgggatggtgctgaatgggggtgttcattggttggtcaagcgagatgaatccttggtgattatatctttccttttagcagaggaggaggttaaagaaatccgagtaccacctaattgcagcaccggtgtagtagaactgggcatcttcagagatcggctatgtataacatcattctcattttcaataagtgaaacatataatgagttttgggtcatgaaggaatatggagtgaggggctcttggactaaaatggagattggcatcccatatcaccggttactgcattctggtttttggacagaaacttatgatttgatgctggttgatgcaacaatgttagctatgtgcaattttaatgataaaagtttttggattttatcgattcgtcatggatttggcgaagttggtggttttggtagcatgagtgtctatgtggagagccgtaagcctcttattgatcaagaacaacaggagaaaagtaaagatgatggacatccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

337

Amino Acids

38.76

Weight (kDa)

6.27

Isoelectric Point (pI)

33.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 243
AccB7I CCANNNNNTGG 1 cut(s) 297
AcuI CTGAAG 1 cut(s) 643
AfaI GTAC 2 cut(s) 309, 618
AfiI CCNNNNNNNGG 1 cut(s) 297
AgeI ACCGGT 2 cut(s) 635, 786
AgsI TTSAA 3 cut(s) 101, 398, 696
AjnI CCWGG 1 cut(s) 9
AluBI AGCT 4 cut(s) 178, 240, 349, 854
AluI AGCT 4 cut(s) 178, 240, 349, 854
Alw21I GWGCWC 1 cut(s) 180
AlwNI CAGNNNCTG 1 cut(s) 263
AoxI GGCC 1 cut(s) 13
ApeKI GCWGC 2 cut(s) 408, 630
AsiGI ACCGGT 2 cut(s) 635, 786
AspS9I GGNCC 2 cut(s) 13, 91
AsuHPI GGTGA 3 cut(s) 403, 580, 776
AvaII GGWCC 1 cut(s) 91
BanII GRGCYC 2 cut(s) 180, 752
BauI CACGAG 1 cut(s) 495
BbsI GAAGAC 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 180
BbvI GCAGC 2 cut(s) 395, 642
BccI CCATC 5 cut(s) 140, 410, 506, 511, 995
BceAI ACGGC 1 cut(s) 939
BciT130I CCWGG 1 cut(s) 11
BclI TGATCA 1 cut(s) 970
BfuAI ACCTGC 1 cut(s) 243
BisI GCNGC 2 cut(s) 409, 631
BlsI GCNGC 2 cut(s) 410, 632
Bme1390I CCNGG 1 cut(s) 11
Bme18I GGWCC 1 cut(s) 91
BmgT120I GGNCC 2 cut(s) 13, 91
BmiI GGNNCC 2 cut(s) 216, 269
BmrFI CCNGG 1 cut(s) 11
BmrI ACTGGG 1 cut(s) 659
BmsI GCATC 5 cut(s) 449, 663, 783, 819, 829
BmuI ACTGGG 1 cut(s) 659
BpiI GAAGAC 1 cut(s) 12
Bsa29I ATCGAT 1 cut(s) 893
BsaAI YACGTR 1 cut(s) 71
BsaBI GATNNNNATC 2 cut(s) 773, 1005
BsaJI CCNNGG 3 cut(s) 10, 291, 564
BsaWI WCCGGW 2 cut(s) 635, 786
Bsc4I CCNNNNNNNGG 1 cut(s) 297
Bse118I RCCGGY 2 cut(s) 635, 786
Bse1I ACTGG 2 cut(s) 16, 654
Bse8I GATNNNNATC 2 cut(s) 773, 1005
BseBI CCWGG 1 cut(s) 11
BseCI ATCGAT 1 cut(s) 893
BseDI CCNNGG 3 cut(s) 10, 291, 564
BseGI GGATG 4 cut(s) 517, 522, 774, 1006
BseJI GATNNNNATC 2 cut(s) 773, 1005
BseLI CCNNNNNNNGG 1 cut(s) 297
BseMII CTCAG 1 cut(s) 165
BseNI ACTGG 2 cut(s) 16, 654
BseRI GAGGAG 2 cut(s) 608, 611
BseXI GCAGC 2 cut(s) 395, 642
BsgI GTGCAG 2 cut(s) 271, 394
BshFI GGCC 1 cut(s) 15
BshTI ACCGGT 2 cut(s) 635, 786
BshVI ATCGAT 1 cut(s) 893
BsiHKAI GWGCWC 1 cut(s) 180
BsiSI CCGG 2 cut(s) 636, 787
BslFI GGGAC 1 cut(s) 54
BslI CCNNNNNNNGG 1 cut(s) 297
BsmFI GGGAC 1 cut(s) 54
BsmI GAATGC 1 cut(s) 796
BsnI GGCC 1 cut(s) 15
Bsp1286I GDGCHC 2 cut(s) 180, 752
Bsp143I GATC 2 cut(s) 664, 970
BspANI GGCC 1 cut(s) 15
BspCNI CTCAG 1 cut(s) 166
BspDI ATCGAT 1 cut(s) 893
BspHI TCATGA 1 cut(s) 726
BspLI GGNNCC 2 cut(s) 216, 269
BspMI ACCTGC 1 cut(s) 243
BsrFI RCCGGY 2 cut(s) 635, 786
BsrI ACTGG 2 cut(s) 16, 654
BssAI RCCGGY 2 cut(s) 635, 786
BssECI CCNNGG 3 cut(s) 10, 291, 564
BssMI GATC 2 cut(s) 664, 970
BssSI CACGAG 1 cut(s) 495
BssT1I CCWWGG 2 cut(s) 291, 564
Bst2BI CACGAG 1 cut(s) 495
Bst2UI CCWGG 1 cut(s) 11
BstBAI YACGTR 1 cut(s) 71
BstDEI CTNAG 1 cut(s) 174
BstF5I GGATG 4 cut(s) 517, 522, 774, 1006
BstKTI GATC 2 cut(s) 667, 973
BstMBI GATC 2 cut(s) 664, 970
BstNI CCWGG 1 cut(s) 11
BstSCI CCNGG 1 cut(s) 9
BstV1I GCAGC 2 cut(s) 395, 642
BstV2I GAAGAC 1 cut(s) 12
Bsu15I ATCGAT 1 cut(s) 893
BsuRI GGCC 1 cut(s) 15
BsuTUI ATCGAT 1 cut(s) 893
BtsCI GGATG 4 cut(s) 517, 522, 774, 1006
BtsIMutI CAGTG 2 cut(s) 171, 411
BveI ACCTGC 1 cut(s) 243
CaiI CAGNNNCTG 1 cut(s) 263
CciI TCATGA 1 cut(s) 726
Cfr10I RCCGGY 2 cut(s) 635, 786
Cfr13I GGNCC 2 cut(s) 13, 91
ClaI ATCGAT 1 cut(s) 893
CseI GACGC 1 cut(s) 35
Csp6I GTAC 2 cut(s) 308, 617
CspAI ACCGGT 2 cut(s) 635, 786
CviAII CATG 4 cut(s) 65, 727, 902, 934
CviQI GTAC 2 cut(s) 308, 617
DdeI CTNAG 1 cut(s) 174
DpnI GATC 2 cut(s) 666, 972
DpnII GATC 2 cut(s) 664, 970
DraI TTTAAA 1 cut(s) 22
Ecl136II GAGCTC 1 cut(s) 178
Eco130I CCWWGG 2 cut(s) 291, 564
Eco24I GRGCYC 2 cut(s) 180, 752
Eco47I GGWCC 1 cut(s) 91
Eco53kI GAGCTC 1 cut(s) 178
Eco57I CTGAAG 1 cut(s) 643
EcoICRI GAGCTC 1 cut(s) 178
EcoRII CCWGG 1 cut(s) 9
EcoT14I CCWWGG 2 cut(s) 291, 564
EcoT22I ATGCAT 1 cut(s) 442
EcoT38I GRGCYC 2 cut(s) 180, 752
ErhI CCWWGG 2 cut(s) 291, 564
FaeI CATG 4 cut(s) 68, 730, 905, 937
FaqI GGGAC 1 cut(s) 54
FatI CATG 4 cut(s) 64, 726, 901, 933
FbaI TGATCA 1 cut(s) 970
Fnu4HI GCNGC 2 cut(s) 409, 631
FokI GGATG 4 cut(s) 524, 529, 761, 993
FriOI GRGCYC 2 cut(s) 180, 752
Fsp4HI GCNGC 2 cut(s) 409, 631
GluI GCNGC 2 cut(s) 409, 631
HaeIII GGCC 1 cut(s) 15
HapII CCGG 2 cut(s) 636, 787
HgaI GACGC 1 cut(s) 35
Hin1II CATG 4 cut(s) 68, 730, 905, 937
HinfI GANTC 7 cut(s) 115, 260, 371, 452, 493, 560, 895
HpaII CCGG 2 cut(s) 636, 787
HphI GGTGA 3 cut(s) 403, 580, 776
Hpy166II GTNNAC 1 cut(s) 74
Hpy188I TCNGA 3 cut(s) 259, 614, 662
Hpy188III TCNNGA 3 cut(s) 244, 727, 974
Hpy8I GTNNAC 1 cut(s) 74
HpyAV CCTTC 4 cut(s) 392, 397, 502, 724
HpyCH4IV ACGT 1 cut(s) 70
HpyF3I CTNAG 1 cut(s) 174
HpySE526I ACGT 1 cut(s) 70
Hsp92II CATG 4 cut(s) 68, 730, 905, 937
Ksp22I TGATCA 1 cut(s) 970
Kzo9I GATC 2 cut(s) 664, 970
LmnI GCTCC 1 cut(s) 346
Lsp1109I GCAGC 2 cut(s) 395, 642
LweI GCATC 5 cut(s) 449, 663, 783, 819, 829
MaeII ACGT 1 cut(s) 70
MaeIII GTNAC 2 cut(s) 191, 789
MalI GATC 2 cut(s) 666, 972
MboI GATC 2 cut(s) 664, 970
MboII GAAGA 3 cut(s) 17, 313, 649
MhlI GDGCHC 2 cut(s) 180, 752
MluCI AATT 3 cut(s) 101, 625, 862
MlyI GAGTC 2 cut(s) 365, 487
MnlI CCTC 9 cut(s) 25, 89, 116, 123, 586, 589, 592, 738, 972
Mph1103I ATGCAT 1 cut(s) 442
MseI TTAA 3 cut(s) 21, 603, 867
MspI CCGG 2 cut(s) 636, 787
MspR9I CCNGG 1 cut(s) 11
Mva1269I GAATGC 1 cut(s) 796
MvaI CCWGG 1 cut(s) 11
NdeII GATC 2 cut(s) 664, 970
NlaIII CATG 4 cut(s) 68, 730, 905, 937
NlaIV GGNNCC 2 cut(s) 216, 269
NmuCI GTSAC 1 cut(s) 191
NsiI ATGCAT 1 cut(s) 442
PagI TCATGA 1 cut(s) 726
PctI GAATGC 1 cut(s) 796
PfeI GAWTC 5 cut(s) 115, 260, 452, 560, 895
PflFI GACNNNGTC 1 cut(s) 45
PflMI CCANNNNNTGG 1 cut(s) 297
PinAI ACCGGT 2 cut(s) 635, 786
PkrI GCNGC 2 cut(s) 410, 632
PleI GAGTC 2 cut(s) 365, 487
PpsI GAGTC 2 cut(s) 365, 487
Ppu21I YACGTR 1 cut(s) 71
Psp124BI GAGCTC 1 cut(s) 180
Psp6I CCWGG 1 cut(s) 9
PspGI CCWGG 1 cut(s) 9
PspN4I GGNNCC 2 cut(s) 216, 269
PspPI GGNCC 2 cut(s) 13, 91
PstNI CAGNNNCTG 1 cut(s) 263
PsyI GACNNNGTC 1 cut(s) 45
RsaI GTAC 2 cut(s) 309, 618
RsaNI GTAC 2 cut(s) 308, 617
SacI GAGCTC 1 cut(s) 180
SaqAI TTAA 3 cut(s) 21, 603, 867
SatI GCNGC 2 cut(s) 409, 631
Sau3AI GATC 2 cut(s) 664, 970
Sau96I GGNCC 2 cut(s) 13, 91
SchI GAGTC 2 cut(s) 365, 487
ScrFI CCNGG 1 cut(s) 11
SduI GDGCHC 2 cut(s) 180, 752
SfaNI GCATC 5 cut(s) 449, 663, 783, 819, 829
SgrAI CRCCGGYG 1 cut(s) 635
SinI GGWCC 1 cut(s) 91
Sse9I AATT 3 cut(s) 101, 625, 862
SspI AATATT 1 cut(s) 199
SstI GAGCTC 1 cut(s) 180
StyD4I CCNGG 1 cut(s) 9
StyI CCWWGG 2 cut(s) 291, 564
TaiI ACGT 1 cut(s) 73
TaqI TCGA 2 cut(s) 180, 893
TasI AATT 3 cut(s) 101, 625, 862
TfiI GAWTC 5 cut(s) 115, 260, 452, 560, 895
Tru1I TTAA 3 cut(s) 21, 603, 867
Tru9I TTAA 3 cut(s) 21, 603, 867
TscAI CASTG 2 cut(s) 178, 418
TseFI GTSAC 1 cut(s) 191
TseI GCWGC 2 cut(s) 408, 630
Tsp45I GTSAC 1 cut(s) 191
TspDTI ATGAA 3 cut(s) 527, 573, 743
TspRI CASTG 2 cut(s) 178, 418
Tth111I GACNNNGTC 1 cut(s) 45
Van91I CCANNNNNTGG 1 cut(s) 297
VpaK11BI GGWCC 1 cut(s) 91
Zsp2I ATGCAT 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.