Rroxscaffold_2G00150600

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000111
Physical Location & Seq
Reverse (-)
87970540 .. 87979234
8695 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00150600.1

Sequence Viewer

Length: 828 bp
ATGAAAGAAGGGATTAAATCTTTCGGATGGAAGAAAAGATCCGAGAGAGAAGTATTGAAGATTGGGGAGGAAAAGATTGGAGATTTGAGAAGAGGAAGGACCGAAGGGTTTGAGAGAGAAAGGCGAAAGCTCGAAGAAATTTTCTCTTCCTTTGGAGTGAACGATATGAAGCTACATTATAACACAAAAATTTCTAGGTTTTCTAGACGGGAGGGAAGATCGAGAAGATCGTTGGACATGGTGTCGTCTGTTGGGAGGCCTGATCCTCCAGTGAAGATGAAACGACAGTTGATAGGGATCCAAAATGGCAACCTTCTACCCGAGATCATGCATGAGATTCTTTCAAGGCTACCAGTGAAGCCCTTCTGCCGCTTTAAGTGTGTATCAAAGCCATGGCAGTCCCTACTCTCCCATCCTGATTTCGTTGCAAAGTATTCCAAAGTCATTGAGAATAAGGATGTATTCTTCCAAAGACGGAGCCTCCTGTTTACTTTTGTTCACCAGGAACATCGTTGGCTTTACTCTTTGGATCTTGACCAGTTTCTCAATGAGAACCATAATGTTGATGTTGGTGGTTTAGTAGCAACACCCGCTGAGCTCGACTTTATTTACAAACCTCTTCCAAGAGGTGGACGTGATTGGATTCCCTTTGTCCATTATTCCTGCTATGGCTTGTTCTTGTCCCGGATATATATGTTGTGGCGACTTCAGTTTCAGTTTGATCAACCCTGTAACCAAGGAATCGAAGAAACTACCAAAGACACCAATATGGAGACTACCAATGAAGCCCTTATTTCGTGGCTTGAGCTTAAATGGGCTTGCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

275

Amino Acids

32.55

Weight (kDa)

9.4

Isoelectric Point (pI)

62.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 107 - 141 2e-07 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 180
AccB7I CCANNNNNTGG 1 cut(s) 629
AciI CCGC 2 cut(s) 370, 591
AclWI GGATC 5 cut(s) 33, 257, 292, 305, 537
AcsI RAATTY 2 cut(s) 138, 189
AcuI CTGAAG 1 cut(s) 692
AfiI CCNNNNNNNGG 1 cut(s) 629
AgsI TTSAA 2 cut(s) 58, 345
AhdI GACNNNNNGTC 1 cut(s) 241
AjiI CACGTC 1 cut(s) 635
AjnI CCWGG 1 cut(s) 501
AluBI AGCT 4 cut(s) 130, 172, 598, 808
AluI AGCT 4 cut(s) 130, 172, 598, 808
Alw21I GWGCWC 1 cut(s) 600
Alw26I GTCTC 1 cut(s) 767
AlwI GGATC 5 cut(s) 33, 257, 292, 305, 537
Ama87I CYCGRG 1 cut(s) 320
AoxI GGCC 1 cut(s) 257
ApoI RAATTY 2 cut(s) 138, 189
Asp700I GAANNNNTTC 1 cut(s) 362
AspS9I GGNCC 1 cut(s) 99
AsuC2I CCSGG 1 cut(s) 685
AsuHPI GGTGA 1 cut(s) 491
AvaI CYCGRG 1 cut(s) 320
AvaII GGWCC 1 cut(s) 99
BamHI GGATCC 1 cut(s) 297
BanII GRGCYC 1 cut(s) 600
Bbv12I GWGCWC 1 cut(s) 600
BccI CCATC 2 cut(s) 21, 420
BciT130I CCWGG 1 cut(s) 503
BclI TGATCA 1 cut(s) 721
BcnI CCSGG 1 cut(s) 685
BcoDI GTCTC 1 cut(s) 767
BfaI CTAG 2 cut(s) 195, 204
BisI GCNGC 1 cut(s) 370
BlpI GCTNAGC 1 cut(s) 594
BlsI GCNGC 1 cut(s) 371
Bme1390I CCNGG 2 cut(s) 503, 685
Bme18I GGWCC 1 cut(s) 99
BmeRI GACNNNNNGTC 1 cut(s) 241
BmeT110I CYCGRG 1 cut(s) 320
BmgBI CACGTC 1 cut(s) 635
BmgT120I GGNCC 1 cut(s) 99
BmiI GGNNCC 2 cut(s) 299, 479
BmrFI CCNGG 2 cut(s) 503, 685
BpmI CTGGAG 1 cut(s) 252
Bpu1102I GCTNAGC 1 cut(s) 594
BpuEI CTTGAG 1 cut(s) 824
BpuMI CCSGG 1 cut(s) 685
BsaBI GATNNNNATC 1 cut(s) 296
BsaJI CCNNGG 2 cut(s) 392, 736
BsaXI ACNNNNNCTCC 2 cut(s) 465, 495
Bsc4I CCNNNNNNNGG 1 cut(s) 629
Bse1I ACTGG 3 cut(s) 269, 353, 538
Bse8I GATNNNNATC 1 cut(s) 296
BseBI CCWGG 1 cut(s) 503
BseDI CCNNGG 2 cut(s) 392, 736
BseGI GGATG 3 cut(s) 32, 412, 463
BseJI GATNNNNATC 1 cut(s) 296
BseLI CCNNNNNNNGG 1 cut(s) 629
BseMII CTCAG 1 cut(s) 585
BseNI ACTGG 3 cut(s) 269, 353, 538
BshFI GGCC 1 cut(s) 259
BsiHKAI GWGCWC 1 cut(s) 600
BsiHKCI CYCGRG 1 cut(s) 320
BsiSI CCGG 1 cut(s) 685
BslFI GGGAC 2 cut(s) 385, 667
BslI CCNNNNNNNGG 1 cut(s) 629
BsmAI GTCTC 1 cut(s) 767
BsmFI GGGAC 2 cut(s) 385, 667
BsnI GGCC 1 cut(s) 259
BsoBI CYCGRG 1 cut(s) 320
Bsp1286I GDGCHC 1 cut(s) 600
Bsp143I GATC 8 cut(s) 38, 218, 227, 262, 297, 324, 529, 721
Bsp1720I GCTNAGC 1 cut(s) 594
Bsp19I CCATGG 1 cut(s) 392
BspACI CCGC 2 cut(s) 370, 591
BspANI GGCC 1 cut(s) 259
BspCNI CTCAG 1 cut(s) 586
BspLI GGNNCC 2 cut(s) 299, 479
BspPI GGATC 5 cut(s) 33, 257, 292, 305, 537
BsrI ACTGG 3 cut(s) 269, 353, 538
BssECI CCNNGG 2 cut(s) 392, 736
BssMI GATC 8 cut(s) 38, 218, 227, 262, 297, 324, 529, 721
BssT1I CCWWGG 2 cut(s) 392, 736
Bst2UI CCWGG 1 cut(s) 503
Bst4CI ACNGT 1 cut(s) 288
Bst6I CTCTTC 3 cut(s) 85, 151, 624
BstC8I GCNNGC 1 cut(s) 820
BstDEI CTNAG 1 cut(s) 594
BstDSI CCRYGG 1 cut(s) 392
BstF5I GGATG 3 cut(s) 32, 412, 463
BstKTI GATC 8 cut(s) 41, 221, 230, 265, 300, 327, 532, 724
BstMAI GTCTC 1 cut(s) 767
BstMBI GATC 8 cut(s) 38, 218, 227, 262, 297, 324, 529, 721
BstMWI GCNNNNNNNGC 1 cut(s) 590
BstNI CCWGG 1 cut(s) 503
BstSCI CCNGG 2 cut(s) 501, 683
BstX2I RGATCY 3 cut(s) 38, 297, 529
BstYI RGATCY 3 cut(s) 38, 297, 529
BsuRI GGCC 1 cut(s) 259
BtgI CCRYGG 1 cut(s) 392
BtrI CACGTC 1 cut(s) 635
BtsCI GGATG 3 cut(s) 32, 412, 463
BtsIMutI CAGTG 2 cut(s) 276, 360
Cac8I GCNNGC 1 cut(s) 820
Cfr13I GGNCC 1 cut(s) 99
CviAII CATG 4 cut(s) 238, 328, 332, 393
DdeI CTNAG 1 cut(s) 594
DpnI GATC 8 cut(s) 40, 220, 229, 264, 299, 326, 531, 723
DpnII GATC 8 cut(s) 38, 218, 227, 262, 297, 324, 529, 721
DriI GACNNNNNGTC 1 cut(s) 241
Eam1104I CTCTTC 3 cut(s) 85, 151, 624
Eam1105I GACNNNNNGTC 1 cut(s) 241
EarI CTCTTC 3 cut(s) 85, 151, 624
Ecl136II GAGCTC 1 cut(s) 598
Eco130I CCWWGG 2 cut(s) 392, 736
Eco147I AGGCCT 1 cut(s) 259
Eco24I GRGCYC 1 cut(s) 600
Eco47I GGWCC 1 cut(s) 99
Eco53kI GAGCTC 1 cut(s) 598
Eco57I CTGAAG 1 cut(s) 692
Eco88I CYCGRG 1 cut(s) 320
EcoICRI GAGCTC 1 cut(s) 598
EcoRII CCWGG 1 cut(s) 501
EcoT14I CCWWGG 2 cut(s) 392, 736
EcoT22I ATGCAT 1 cut(s) 333
EcoT38I GRGCYC 1 cut(s) 600
ErhI CCWWGG 2 cut(s) 392, 736
FaeI CATG 4 cut(s) 241, 331, 335, 396
FaqI GGGAC 2 cut(s) 385, 667
FatI CATG 4 cut(s) 237, 327, 331, 392
FauI CCCGC 1 cut(s) 598
FbaI TGATCA 1 cut(s) 721
Fnu4HI GCNGC 1 cut(s) 370
FokI GGATG 3 cut(s) 39, 399, 470
FriOI GRGCYC 1 cut(s) 600
Fsp4HI GCNGC 1 cut(s) 370
FspBI CTAG 2 cut(s) 195, 204
GluI GCNGC 1 cut(s) 370
GsuI CTGGAG 1 cut(s) 252
HaeIII GGCC 1 cut(s) 259
HapII CCGG 1 cut(s) 685
Hin1II CATG 4 cut(s) 241, 331, 335, 396
HinfI GANTC 3 cut(s) 337, 643, 741
HpaII CCGG 1 cut(s) 685
HphI GGTGA 1 cut(s) 491
Hpy166II GTNNAC 4 cut(s) 160, 489, 499, 632
Hpy188I TCNGA 2 cut(s) 26, 43
Hpy188III TCNNGA 4 cut(s) 204, 222, 416, 533
Hpy8I GTNNAC 4 cut(s) 160, 489, 499, 632
HpyAV CCTTC 4 cut(s) 90, 98, 323, 373
HpyCH4III ACNGT 1 cut(s) 288
HpyCH4IV ACGT 1 cut(s) 634
HpyCH4V TGCA 3 cut(s) 331, 428, 822
HpyF10VI GCNNNNNNNGC 1 cut(s) 590
HpyF3I CTNAG 1 cut(s) 594
HpySE526I ACGT 1 cut(s) 634
Hsp92II CATG 4 cut(s) 241, 331, 335, 396
Ksp22I TGATCA 1 cut(s) 721
Kzo9I GATC 8 cut(s) 38, 218, 227, 262, 297, 324, 529, 721
LmnI GCTCC 1 cut(s) 477
MaeI CTAG 2 cut(s) 195, 204
MaeII ACGT 1 cut(s) 634
MaeIII GTNAC 1 cut(s) 731
MalI GATC 8 cut(s) 40, 220, 229, 264, 299, 326, 531, 723
MboI GATC 8 cut(s) 38, 218, 227, 262, 297, 324, 529, 721
MflI RGATCY 3 cut(s) 38, 297, 529
MhlI GDGCHC 1 cut(s) 600
MluCI AATT 2 cut(s) 138, 189
MmeI TCCRAC 1 cut(s) 213
MnlI CCTC 8 cut(s) 61, 86, 205, 249, 276, 491, 620, 627
Mph1103I ATGCAT 1 cut(s) 333
MroXI GAANNNNTTC 1 cut(s) 362
MseI TTAA 3 cut(s) 15, 375, 810
MslI CAYNNNNRTG 1 cut(s) 767
MspA1I CMGCKG 1 cut(s) 593
MspI CCGG 1 cut(s) 685
MspR9I CCNGG 2 cut(s) 503, 685
MvaI CCWGG 1 cut(s) 503
MwoI GCNNNNNNNGC 1 cut(s) 590
NciI CCSGG 1 cut(s) 685
NcoI CCATGG 1 cut(s) 392
NdeII GATC 8 cut(s) 38, 218, 227, 262, 297, 324, 529, 721
NlaIII CATG 4 cut(s) 241, 331, 335, 396
NlaIV GGNNCC 2 cut(s) 299, 479
NsiI ATGCAT 1 cut(s) 333
PceI AGGCCT 1 cut(s) 259
PcsI WCGNNNNNNNCGW 1 cut(s) 227
PdmI GAANNNNTTC 1 cut(s) 362
PfeI GAWTC 3 cut(s) 337, 643, 741
PflMI CCANNNNNTGG 1 cut(s) 629
PfoI TCCNGGA 1 cut(s) 683
PkrI GCNGC 1 cut(s) 371
PsiI TTATAA 1 cut(s) 180
Psp124BI GAGCTC 1 cut(s) 600
Psp6I CCWGG 1 cut(s) 501
PspGI CCWGG 1 cut(s) 501
PspN4I GGNNCC 2 cut(s) 299, 479
PspPI GGNCC 1 cut(s) 99
PsuI RGATCY 3 cut(s) 38, 297, 529
RseI CAYNNNNRTG 1 cut(s) 767
SacI GAGCTC 1 cut(s) 600
SaqAI TTAA 3 cut(s) 15, 375, 810
SatI GCNGC 1 cut(s) 370
Sau3AI GATC 8 cut(s) 38, 218, 227, 262, 297, 324, 529, 721
Sau96I GGNCC 1 cut(s) 99
ScrFI CCNGG 2 cut(s) 503, 685
SduI GDGCHC 1 cut(s) 600
SetI ASST 9 cut(s) 132, 174, 200, 315, 600, 619, 631, 637, 810
SinI GGWCC 1 cut(s) 99
SmiMI CAYNNNNRTG 1 cut(s) 767
SmlI CTYRAG 1 cut(s) 803
SmoI CTYRAG 1 cut(s) 803
Sse9I AATT 2 cut(s) 138, 189
SseBI AGGCCT 1 cut(s) 259
SsiI CCGC 2 cut(s) 370, 591
SspMI CTAG 2 cut(s) 195, 204
SstI GAGCTC 1 cut(s) 600
StuI AGGCCT 1 cut(s) 259
StyD4I CCNGG 2 cut(s) 501, 683
StyI CCWWGG 2 cut(s) 392, 736
TaaI ACNGT 1 cut(s) 288
TaiI ACGT 1 cut(s) 637
TaqI TCGA 4 cut(s) 132, 221, 600, 744
TaqII GACCGA 1 cut(s) 116
TasI AATT 2 cut(s) 138, 189
TauI GCSGC 1 cut(s) 372
TfiI GAWTC 3 cut(s) 337, 643, 741
Tru1I TTAA 3 cut(s) 15, 375, 810
Tru9I TTAA 3 cut(s) 15, 375, 810
TscAI CASTG 2 cut(s) 276, 360
TspDTI ATGAA 4 cut(s) 17, 182, 293, 798
TspGWI ACGGA 1 cut(s) 490
TspRI CASTG 2 cut(s) 276, 360
Van91I CCANNNNNTGG 1 cut(s) 629
VpaK11BI GGWCC 1 cut(s) 99
XapI RAATTY 2 cut(s) 138, 189
XbaI TCTAGA 1 cut(s) 203
XmnI GAANNNNTTC 1 cut(s) 362
XspI CTAG 2 cut(s) 195, 204
Zsp2I ATGCAT 1 cut(s) 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.