FvH4_3g19801

F-box kelch-repeat protein At3g06240-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
12964370 .. 12965407
1038 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g19801.t1

Sequence Viewer

Length: 648 bp
ATGGGTGTATATACCGATTACTTCCGTTTTCGGACCGTTACCCTTCTCAGAAAGGAAGACGTCAATAATCTATTCCGTTTCGTTCCTCTACCGATTTGCAAAGATAAAAACCTAAGTGAAGGAACTCAAGGAAGAGGAGAGGAGAGGAAGGAGAAAGAGTCAAGTCATTATGTCGCTTCAGGTGTGTATCCAAGTCTTGATTGGCTTTCGCTAATCTTAGACCCCCAATTTGTCAAGATGCATTTCAAAAGAGCCATTGAAAATGAGCATGTGTTTTACCAGAGAAGAAAACTCTTATTCACTGATGAAATTCGGGATTCACTTTACTCTTTCGACCTTGATGAGTATCTGAATCATTATAAGGATCACCCGTTTCTGAATGGTACTGGTAACTGTAACGATGTCGGTGTTATTGTTAATGATTATGATGGTGATCTAGTTGTCACTAGACTTGAACTGCCCGATTATGTTAGGGTCTCTGAAATTATAACTGAATGTTGGAGGATGGTGTCGATCTGCTGTGGCCTTGTGTTATTAACTTATGGTCGTTCGGAGTTTTATGTGGCCAACCCAGCAACAAGGAAGTATAAGAGACAAGCAACAAGGAGTTTTACATTTCTAAGTTCAGTTGTGAATCCGTTTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

216

Amino Acids

25.16

Weight (kDa)

6.53

Isoelectric Point (pI)

50.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 360, 488
AatII GACGTC 1 cut(s) 63
AclWI GGATC 1 cut(s) 372
AcoI YGGCCR 1 cut(s) 564
AcsI RAATTY 1 cut(s) 309
AcuI CTGAAG 1 cut(s) 162
AcyI GRCGYC 1 cut(s) 60
AfaI GTAC 1 cut(s) 385
AgsI TTSAA 3 cut(s) 247, 260, 455
Alw26I GTCTC 2 cut(s) 481, 586
AlwI GGATC 1 cut(s) 372
AoxI GGCC 2 cut(s) 523, 564
ApoI RAATTY 1 cut(s) 309
ArsI GACNNNNNNTTYG 2 cut(s) 212, 244
AspS9I GGNCC 1 cut(s) 33
AsuHPI GGTGA 2 cut(s) 359, 443
AvaII GGWCC 1 cut(s) 33
BalI TGGCCA 1 cut(s) 566
BbsI GAAGAC 1 cut(s) 63
BccI CCATC 2 cut(s) 422, 499
BciVI GTATCC 1 cut(s) 198
BcoDI GTCTC 2 cut(s) 481, 586
BfaI CTAG 2 cut(s) 437, 447
BfuI GTATCC 1 cut(s) 198
Bme18I GGWCC 1 cut(s) 33
BmgT120I GGNCC 1 cut(s) 33
BmsI GCATC 1 cut(s) 228
BpiI GAAGAC 1 cut(s) 63
BpuEI CTTGAG 1 cut(s) 111
BsaBI GATNNNNATC 2 cut(s) 345, 432
BsaHI GRCGYC 1 cut(s) 60
BsaI GGTCTC 1 cut(s) 481
BsaXI ACNNNNNCTCC 2 cut(s) 143, 173
Bse1I ACTGG 1 cut(s) 391
Bse8I GATNNNNATC 2 cut(s) 345, 432
BseGI GGATG 1 cut(s) 510
BseJI GATNNNNATC 2 cut(s) 345, 432
BseMII CTCAG 1 cut(s) 61
BseNI ACTGG 1 cut(s) 391
BseRI GAGGAG 2 cut(s) 150, 155
BseYI CCCAGC 1 cut(s) 571
BshFI GGCC 2 cut(s) 525, 566
BsmAI GTCTC 2 cut(s) 481, 586
BsnI GGCC 2 cut(s) 525, 566
Bso31I GGTCTC 1 cut(s) 481
Bsp143I GATC 3 cut(s) 364, 433, 513
BspANI GGCC 2 cut(s) 525, 566
BspCNI CTCAG 1 cut(s) 60
BspPI GGATC 1 cut(s) 372
BspTNI GGTCTC 1 cut(s) 481
BsrI ACTGG 1 cut(s) 391
BssMI GATC 3 cut(s) 364, 433, 513
BssNI GRCGYC 1 cut(s) 60
Bst4CI ACNGT 2 cut(s) 37, 395
Bst6I CTCTTC 1 cut(s) 127
BstACI GRCGYC 1 cut(s) 60
BstDEI CTNAG 4 cut(s) 47, 113, 217, 620
BstF5I GGATG 1 cut(s) 510
BstKTI GATC 3 cut(s) 367, 436, 516
BstMAI GTCTC 2 cut(s) 481, 586
BstMBI GATC 3 cut(s) 364, 433, 513
BstMWI GCNNNNNNNGC 1 cut(s) 572
BstNSI RCATGY 1 cut(s) 272
BstV2I GAAGAC 1 cut(s) 63
BsuI GTATCC 1 cut(s) 198
BsuRI GGCC 2 cut(s) 525, 566
BtsCI GGATG 1 cut(s) 510
BtsIMutI CAGTG 1 cut(s) 300
Cfr13I GGNCC 1 cut(s) 33
CpoI CGGWCCG 1 cut(s) 33
Csp6I GTAC 1 cut(s) 384
CspI CGGWCCG 1 cut(s) 33
CviAII CATG 1 cut(s) 269
CviJI RGCY 4 cut(s) 205, 254, 525, 566
CviKI_1 RGCY 4 cut(s) 205, 254, 525, 566
CviQI GTAC 1 cut(s) 384
DdeI CTNAG 4 cut(s) 47, 113, 217, 620
DpnI GATC 3 cut(s) 366, 435, 515
DpnII GATC 3 cut(s) 364, 433, 513
EaeI YGGCCR 1 cut(s) 564
Eam1104I CTCTTC 1 cut(s) 127
EarI CTCTTC 1 cut(s) 127
Eco31I GGTCTC 1 cut(s) 481
Eco47I GGWCC 1 cut(s) 33
Eco57I CTGAAG 1 cut(s) 162
EcoT22I ATGCAT 1 cut(s) 243
FaeI CATG 1 cut(s) 272
FatI CATG 1 cut(s) 268
FokI GGATG 1 cut(s) 517
FspBI CTAG 2 cut(s) 437, 447
GsaI CCCAGC 1 cut(s) 575
HaeIII GGCC 2 cut(s) 525, 566
Hin1I GRCGYC 1 cut(s) 60
Hin1II CATG 1 cut(s) 272
HinfI GANTC 4 cut(s) 158, 317, 352, 634
HphI GGTGA 2 cut(s) 359, 443
Hpy188I TCNGA 6 cut(s) 33, 50, 351, 378, 481, 553
Hpy188III TCNNGA 3 cut(s) 197, 235, 314
HpyAV CCTTC 3 cut(s) 53, 113, 142
HpyCH4III ACNGT 2 cut(s) 37, 395
HpyCH4IV ACGT 1 cut(s) 60
HpyCH4V TGCA 2 cut(s) 99, 241
HpyF10VI GCNNNNNNNGC 1 cut(s) 572
HpyF3I CTNAG 4 cut(s) 47, 113, 217, 620
HpySE526I ACGT 1 cut(s) 60
Hsp92I GRCGYC 1 cut(s) 60
Hsp92II CATG 1 cut(s) 272
Kzo9I GATC 3 cut(s) 364, 433, 513
LpnPI CCDG 4 cut(s) 165, 293, 372, 585
LweI GCATC 1 cut(s) 228
MaeI CTAG 2 cut(s) 437, 447
MaeII ACGT 1 cut(s) 60
MaeIII GTNAC 4 cut(s) 37, 389, 395, 442
MalI GATC 3 cut(s) 366, 435, 515
MboI GATC 3 cut(s) 364, 433, 513
MboII GAAGA 3 cut(s) 68, 144, 297
MlsI TGGCCA 1 cut(s) 566
MluCI AATT 3 cut(s) 227, 309, 483
MluNI TGGCCA 1 cut(s) 566
MlyI GAGTC 1 cut(s) 167
MmeI TCCRAC 1 cut(s) 479
MnlI CCTC 5 cut(s) 96, 128, 133, 138, 495
Mox20I TGGCCA 1 cut(s) 566
Mph1103I ATGCAT 1 cut(s) 243
MscI TGGCCA 1 cut(s) 566
MseI TTAA 2 cut(s) 417, 536
Msp20I TGGCCA 1 cut(s) 566
MwoI GCNNNNNNNGC 1 cut(s) 572
NdeII GATC 3 cut(s) 364, 433, 513
NlaIII CATG 1 cut(s) 272
NmuCI GTSAC 1 cut(s) 442
NsiI ATGCAT 1 cut(s) 243
NspI RCATGY 1 cut(s) 272
PfeI GAWTC 3 cut(s) 317, 352, 634
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
PsiI TTATAA 2 cut(s) 360, 488
PspFI CCCAGC 1 cut(s) 571
PspPI GGNCC 1 cut(s) 33
RsaI GTAC 1 cut(s) 385
RsaNI GTAC 1 cut(s) 384
Rsr2I CGGWCCG 1 cut(s) 33
RsrII CGGWCCG 1 cut(s) 33
SaqAI TTAA 2 cut(s) 417, 536
Sau3AI GATC 3 cut(s) 364, 433, 513
Sau96I GGNCC 1 cut(s) 33
SchI GAGTC 1 cut(s) 167
SetI ASST 4 cut(s) 63, 114, 184, 339
SfaNI GCATC 1 cut(s) 228
SinI GGWCC 1 cut(s) 33
SmlI CTYRAG 1 cut(s) 126
SmoI CTYRAG 1 cut(s) 126
Sse9I AATT 3 cut(s) 227, 309, 483
SspMI CTAG 2 cut(s) 437, 447
TaaI ACNGT 2 cut(s) 37, 395
TaiI ACGT 1 cut(s) 63
TaqI TCGA 2 cut(s) 333, 512
TasI AATT 3 cut(s) 227, 309, 483
TfiI GAWTC 3 cut(s) 317, 352, 634
Tru1I TTAA 2 cut(s) 417, 536
Tru9I TTAA 2 cut(s) 417, 536
TscAI CASTG 1 cut(s) 307
TseFI GTSAC 1 cut(s) 442
Tsp45I GTSAC 1 cut(s) 442
TspDTI ATGAA 1 cut(s) 321
TspGWI ACGGA 3 cut(s) 14, 65, 627
TspRI CASTG 1 cut(s) 307
VpaK11BI GGWCC 1 cut(s) 33
XapI RAATTY 1 cut(s) 309
XceI RCATGY 1 cut(s) 272
XcmI CCANNNNNNNNNTGG 1 cut(s) 198
XspI CTAG 2 cut(s) 437, 447
ZraI GACGTC 1 cut(s) 61
Zsp2I ATGCAT 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.