RLG00000016161

F-box kelch-repeat protein At3g06240-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
4374020 .. 4374418
399 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016161

Sequence Viewer

Length: 399 bp
ATGGAAGACCGTGGCCAAAACGTAGACCTTCCACCCGAGATGATGCATGAAATTATTTCAAGGCTACCAGTGAAGCCCCTGTGCCGCTTCAAGTGTGTATCAAAGCCATGGCTGTCCCTAATCTCCGATCCTGATTTCGTCGCAAACTATTCCAAAGCCATTGAGAATAAGGATGTCTTCTTCCTAAGACGGTGCCTCCTTTTTACTTTTCTTCGCCCGGGACATGATTTTCGGCTATACTCTTTGGATGTTGACCAGTTTCTCAATGAGAATCATAATGTTGATGTTGATGTTGATGGTTTAGTAGCAGCACCCACTGCACTGAGCTCGACTTTGATTACAATCAATCATCTTCTAGATGATGGATGGGGTTCTGCTTGGGTTCCCTATATCCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

133

Amino Acids

15.14

Weight (kDa)

5.18

Isoelectric Point (pI)

36.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 9 - 46 2.4e-10 F-box domain
F-box-like PF12937 9 - 45 2.5e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 192
AccI GTMKAC 1 cut(s) 24
AciI CCGC 1 cut(s) 85
AclWI GGATC 1 cut(s) 122
AcoI YGGCCR 1 cut(s) 13
AgsI TTSAA 2 cut(s) 60, 91
AluBI AGCT 1 cut(s) 327
AluI AGCT 1 cut(s) 327
Alw21I GWGCWC 1 cut(s) 329
AlwI GGATC 1 cut(s) 122
Ama87I CYCGRG 2 cut(s) 35, 217
AoxI GGCC 1 cut(s) 13
ApeKI GCWGC 1 cut(s) 308
ArsI GACNNNNNNTTYG 2 cut(s) 213, 245
AsuC2I CCSGG 2 cut(s) 218, 219
AvaI CYCGRG 2 cut(s) 35, 217
BalI TGGCCA 1 cut(s) 15
BanI GGYRCC 1 cut(s) 192
BanII GRGCYC 1 cut(s) 329
BbsI GAAGAC 2 cut(s) 12, 169
Bbv12I GWGCWC 1 cut(s) 329
BbvI GCAGC 1 cut(s) 320
BccI CCATC 3 cut(s) 290, 356, 360
BcgI CGANNNNNNTGC 2 cut(s) 309, 343
BcnI CCSGG 2 cut(s) 218, 219
BfaI CTAG 1 cut(s) 356
BisI GCNGC 2 cut(s) 85, 309
BlsI GCNGC 2 cut(s) 86, 310
Bme1390I CCNGG 2 cut(s) 218, 219
BmeT110I CYCGRG 2 cut(s) 35, 217
BmiI GGNNCC 2 cut(s) 194, 384
BmrFI CCNGG 2 cut(s) 218, 219
BmsI GCATC 1 cut(s) 33
BpiI GAAGAC 2 cut(s) 12, 169
BpuMI CCSGG 2 cut(s) 218, 219
BsaBI GATNNNNATC 1 cut(s) 341
BsaJI CCNNGG 3 cut(s) 10, 107, 217
BsaXI ACNNNNNCTCC 2 cut(s) 180, 210
Bse1I ACTGG 2 cut(s) 68, 256
Bse8I GATNNNNATC 1 cut(s) 341
BseDI CCNNGG 3 cut(s) 10, 107, 217
BseGI GGATG 3 cut(s) 178, 253, 371
BseJI GATNNNNATC 1 cut(s) 341
BseMII CTCAG 1 cut(s) 314
BseNI ACTGG 2 cut(s) 68, 256
BseXI GCAGC 1 cut(s) 320
BsgI GTGCAG 1 cut(s) 303
BshFI GGCC 1 cut(s) 15
BshNI GGYRCC 1 cut(s) 192
BsiHKAI GWGCWC 1 cut(s) 329
BsiHKCI CYCGRG 2 cut(s) 35, 217
BsiSI CCGG 1 cut(s) 218
BslFI GGGAC 2 cut(s) 100, 234
BsmFI GGGAC 2 cut(s) 100, 234
BsnI GGCC 1 cut(s) 15
BsoBI CYCGRG 2 cut(s) 35, 217
Bsp1286I GDGCHC 1 cut(s) 329
Bsp143I GATC 1 cut(s) 127
Bsp19I CCATGG 1 cut(s) 107
BspACI CCGC 1 cut(s) 85
BspANI GGCC 1 cut(s) 15
BspCNI CTCAG 1 cut(s) 315
BspLI GGNNCC 2 cut(s) 194, 384
BspPI GGATC 1 cut(s) 122
BspT107I GGYRCC 1 cut(s) 192
BsrI ACTGG 2 cut(s) 68, 256
BssECI CCNNGG 3 cut(s) 10, 107, 217
BssMI GATC 1 cut(s) 127
BssT1I CCWWGG 1 cut(s) 107
Bst4CI ACNGT 2 cut(s) 11, 192
BstAPI GCANNNNNTGC 1 cut(s) 317
BstDEI CTNAG 2 cut(s) 185, 323
BstDSI CCRYGG 2 cut(s) 10, 107
BstF5I GGATG 3 cut(s) 178, 253, 371
BstKTI GATC 1 cut(s) 130
BstMBI GATC 1 cut(s) 127
BstMWI GCNNNNNNNGC 1 cut(s) 317
BstSCI CCNGG 2 cut(s) 216, 217
BstV1I GCAGC 1 cut(s) 320
BstV2I GAAGAC 2 cut(s) 12, 169
BsuRI GGCC 1 cut(s) 15
BtgI CCRYGG 2 cut(s) 10, 107
BtsCI GGATG 3 cut(s) 178, 253, 371
BtsI GCAGTG 1 cut(s) 315
BtsIMutI CAGTG 3 cut(s) 75, 315, 320
Cfr9I CCCGGG 1 cut(s) 217
CviAII CATG 3 cut(s) 47, 108, 224
CviJI RGCY 8 cut(s) 15, 64, 76, 106, 112, 158, 235, 327
CviKI_1 RGCY 8 cut(s) 15, 64, 76, 106, 112, 158, 235, 327
DdeI CTNAG 2 cut(s) 185, 323
DpnI GATC 1 cut(s) 129
DpnII GATC 1 cut(s) 127
EaeI YGGCCR 1 cut(s) 13
Ecl136II GAGCTC 1 cut(s) 327
Eco130I CCWWGG 1 cut(s) 107
Eco24I GRGCYC 1 cut(s) 329
Eco53kI GAGCTC 1 cut(s) 327
Eco88I CYCGRG 2 cut(s) 35, 217
EcoICRI GAGCTC 1 cut(s) 327
EcoT14I CCWWGG 1 cut(s) 107
EcoT22I ATGCAT 1 cut(s) 48
EcoT38I GRGCYC 1 cut(s) 329
ErhI CCWWGG 1 cut(s) 107
FaeI CATG 3 cut(s) 50, 111, 227
FaiI YATR 6 cut(s) 48, 109, 225, 238, 276, 390
FalI AAGNNNNNCTT 2 cut(s) 161, 193
FaqI GGGAC 2 cut(s) 100, 234
FatI CATG 3 cut(s) 46, 107, 223
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 2 cut(s) 85, 309
FokI GGATG 3 cut(s) 185, 260, 378
FriOI GRGCYC 1 cut(s) 329
Fsp4HI GCNGC 2 cut(s) 85, 309
FspBI CTAG 1 cut(s) 356
GluI GCNGC 2 cut(s) 85, 309
HaeIII GGCC 1 cut(s) 15
HapII CCGG 1 cut(s) 218
Hin1II CATG 3 cut(s) 50, 111, 227
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HinfI GANTC 1 cut(s) 271
HpaII CCGG 1 cut(s) 218
Hpy166II GTNNAC 2 cut(s) 25, 253
Hpy188I TCNGA 1 cut(s) 127
Hpy188III TCNNGA 2 cut(s) 131, 356
Hpy8I GTNNAC 2 cut(s) 25, 253
Hpy99I CGWCG 1 cut(s) 143
HpyAV CCTTC 1 cut(s) 38
HpyCH4III ACNGT 2 cut(s) 11, 192
HpyCH4IV ACGT 1 cut(s) 21
HpyCH4V TGCA 2 cut(s) 46, 320
HpyF10VI GCNNNNNNNGC 1 cut(s) 317
HpyF3I CTNAG 2 cut(s) 185, 323
HpySE526I ACGT 1 cut(s) 21
Hsp92II CATG 3 cut(s) 50, 111, 227
Kzo9I GATC 1 cut(s) 127
LpnPI CCDG 5 cut(s) 81, 92, 144, 231, 269
Lsp1109I GCAGC 1 cut(s) 320
LweI GCATC 1 cut(s) 33
MaeI CTAG 1 cut(s) 356
MaeII ACGT 1 cut(s) 21
MalI GATC 1 cut(s) 129
MboI GATC 1 cut(s) 127
MboII GAAGA 5 cut(s) 17, 169, 172, 203, 344
MhlI GDGCHC 1 cut(s) 329
MlsI TGGCCA 1 cut(s) 15
MluCI AATT 1 cut(s) 51
MluNI TGGCCA 1 cut(s) 15
MnlI CCTC 1 cut(s) 206
Mox20I TGGCCA 1 cut(s) 15
Mph1103I ATGCAT 1 cut(s) 48
MscI TGGCCA 1 cut(s) 15
Msp20I TGGCCA 1 cut(s) 15
MspI CCGG 1 cut(s) 218
MspR9I CCNGG 2 cut(s) 218, 219
MwoI GCNNNNNNNGC 1 cut(s) 317
NciI CCSGG 2 cut(s) 218, 219
NcoI CCATGG 1 cut(s) 107
NdeII GATC 1 cut(s) 127
NlaIII CATG 3 cut(s) 50, 111, 227
NlaIV GGNNCC 2 cut(s) 194, 384
NsiI ATGCAT 1 cut(s) 48
PfeI GAWTC 1 cut(s) 271
PkrI GCNGC 2 cut(s) 86, 310
Psp124BI GAGCTC 1 cut(s) 329
PspN4I GGNNCC 2 cut(s) 194, 384
SacI GAGCTC 1 cut(s) 329
SatI GCNGC 2 cut(s) 85, 309
Sau3AI GATC 1 cut(s) 127
ScrFI CCNGG 2 cut(s) 218, 219
SduI GDGCHC 1 cut(s) 329
SetI ASST 3 cut(s) 24, 30, 329
SfaNI GCATC 1 cut(s) 33
SmaI CCCGGG 1 cut(s) 219
Sse9I AATT 1 cut(s) 51
SsiI CCGC 1 cut(s) 85
SspMI CTAG 1 cut(s) 356
SstI GAGCTC 1 cut(s) 329
StyD4I CCNGG 2 cut(s) 216, 217
StyI CCWWGG 1 cut(s) 107
TaaI ACNGT 2 cut(s) 11, 192
TaiI ACGT 1 cut(s) 24
TaqI TCGA 1 cut(s) 329
TasI AATT 1 cut(s) 51
TauI GCSGC 1 cut(s) 87
TfiI GAWTC 1 cut(s) 271
TscAI CASTG 3 cut(s) 75, 322, 327
TseI GCWGC 1 cut(s) 308
TspDTI ATGAA 1 cut(s) 63
TspMI CCCGGG 1 cut(s) 217
TspRI CASTG 3 cut(s) 75, 322, 327
XbaI TCTAGA 1 cut(s) 355
XmaI CCCGGG 1 cut(s) 217
XmiI GTMKAC 1 cut(s) 24
XspI CTAG 1 cut(s) 356
Zsp2I ATGCAT 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.