Prupe.2G163500_v2.0.a1

F-box domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000111
Physical Location & Seq
Forward (+)
21367727 .. 21369271
1545 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G163500.1

Sequence Viewer

Length: 882 bp
ATGGAAGAGCGAAGGCTGACGATCGCCGGAAACTCTAACTCTAATAATGGCCATCTTCCATCAACGATGATAGAGGAGATTCTCTCAAGGCTGCCAGTGAAGTCCTTATGCCGCTTCAAGTGTGTCTCAAAGCCATGGAGTTCCCTAATCTCCGACGACCCCAGTTTTGTTGCATTGCACTTGTGCAAAGGCTTTGGGGAGGATAAAGATGATCTACTCTTCCGAAGAAGAAGAAGAGTCATATTTACTGATGCCGCAGGTAATGGCCTCCACTCTATGCATCTTGACTACGATGATGAGTTTCTCAATCATAACAACGAAGAAGATGCATCATACTATCACGATAATCGCAATCGTAACAGTTTCGATTTCGATGATGATGATGAGGAGGAGGAGGAGGGTGGTGGTAGTAATTTATTAGCAACAGCCACGGAGCTCCAGTATGTTTATAGCGAGTTATCAGGTATTTCGGTTTCCATGTTGGGTTGCTGCAATGGCTTGTTGCTATGCATGTTTTTATATGACCCGCAGTTATATTTGGTTAACCCAGCAACAAGGCAATCCAAGAAACTACCACAAATACCAACCCAATATACAATTGATGACCTCTACTTTTGTAACGTGTATGGGTTTGGATTTGATTCTTCCACTCACCAACACAAGGTCGTCAATGGTGTGGTCTACAGAAGAAATGTCCGTGATGATGATGAAGGAGGGGTTGAGTTTAATGTGTATGCATTGGAAACTAATTCTTGGCGACAGATTCAGTGCCTATTTCCCCACCACATCTTTCCATGTCAAAATAAAGGGACCCTGCTGAATGGAAATCTCCATTGGTTGGGGACAAGAGTCGGAGAAGATGATCATGATCATCTTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

294

Amino Acids

33.52

Weight (kDa)

4.97

Isoelectric Point (pI)

51.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 248
AccB7I CCANNNNNTGG 1 cut(s) 838
AccI GTMKAC 1 cut(s) 681
AciI CCGC 3 cut(s) 112, 255, 527
AcoI YGGCCR 1 cut(s) 49
AfiI CCNNNNNNNGG 2 cut(s) 661, 838
AflIII ACRYGT 1 cut(s) 621
AgsI TTSAA 1 cut(s) 118
AjuI GAANNNNNNNTTGG 2 cut(s) 817, 849
AluBI AGCT 1 cut(s) 436
AluI AGCT 1 cut(s) 436
Alw21I GWGCWC 1 cut(s) 438
Alw26I GTCTC 1 cut(s) 130
AoxI GGCC 2 cut(s) 49, 265
ApeKI GCWGC 2 cut(s) 91, 489
ArsI GACNNNNNNTTYG 2 cut(s) 149, 181
AspS9I GGNCC 1 cut(s) 810
AsuHPI GGTGA 1 cut(s) 644
AvaII GGWCC 1 cut(s) 810
BalI TGGCCA 1 cut(s) 51
BanII GRGCYC 1 cut(s) 438
Bbv12I GWGCWC 1 cut(s) 438
BbvI GCAGC 2 cut(s) 78, 476
BccI CCATC 2 cut(s) 60, 67
BcgI CGANNNNNNTGC 2 cut(s) 308, 342
BclI TGATCA 2 cut(s) 862, 868
BcoDI GTCTC 1 cut(s) 130
BfmI CTRYAG 1 cut(s) 682
BfuAI ACCTGC 1 cut(s) 248
BisI GCNGC 4 cut(s) 92, 112, 255, 490
BlsI GCNGC 4 cut(s) 93, 113, 256, 491
Bme18I GGWCC 1 cut(s) 810
BmgT120I GGNCC 1 cut(s) 810
BmiI GGNNCC 2 cut(s) 811, 812
BmrI ACTGGG 1 cut(s) 156
BmsI GCATC 4 cut(s) 241, 289, 316, 338
BmuI ACTGGG 1 cut(s) 156
BoxI GACNNNNGTC 1 cut(s) 848
BplI GAGNNNNNCTC 2 cut(s) 68, 100
BpmI CTGGAG 1 cut(s) 422
BpuEI CTTGAG 1 cut(s) 70
BsaBI GATNNNNATC 1 cut(s) 867
BsaJI CCNNGG 2 cut(s) 134, 429
BsaXI ACNNNNNCTCC 2 cut(s) 425, 455
Bsc4I CCNNNNNNNGG 2 cut(s) 661, 838
Bse1I ACTGG 3 cut(s) 95, 162, 439
Bse3DI GCAATG 2 cut(s) 173, 499
Bse8I GATNNNNATC 1 cut(s) 867
BseDI CCNNGG 2 cut(s) 134, 429
BseJI GATNNNNATC 1 cut(s) 867
BseLI CCNNNNNNNGG 2 cut(s) 661, 838
BseMI GCAATG 2 cut(s) 173, 499
BseNI ACTGG 3 cut(s) 95, 162, 439
BseRI GAGGAG 5 cut(s) 89, 401, 404, 407, 410
BseXI GCAGC 2 cut(s) 78, 476
BseYI CCCAGC 1 cut(s) 547
Bsh1285I CGRYCG 1 cut(s) 24
BshFI GGCC 2 cut(s) 51, 267
BsiEI CGRYCG 1 cut(s) 24
BsiHKAI GWGCWC 1 cut(s) 438
BsiSI CCGG 1 cut(s) 27
BslFI GGGAC 2 cut(s) 823, 856
BslI CCNNNNNNNGG 2 cut(s) 661, 838
BsmAI GTCTC 1 cut(s) 130
BsmFI GGGAC 2 cut(s) 823, 856
BsnI GGCC 2 cut(s) 51, 267
Bsp1286I GDGCHC 1 cut(s) 438
Bsp143I GATC 4 cut(s) 21, 211, 862, 868
Bsp19I CCATGG 1 cut(s) 134
BspACI CCGC 3 cut(s) 112, 255, 527
BspANI GGCC 2 cut(s) 51, 267
BspHI TCATGA 1 cut(s) 865
BspLI GGNNCC 2 cut(s) 811, 812
BspMI ACCTGC 1 cut(s) 248
BsrDI GCAATG 2 cut(s) 173, 499
BsrI ACTGG 3 cut(s) 95, 162, 439
BssECI CCNNGG 2 cut(s) 134, 429
BssMI GATC 4 cut(s) 21, 211, 862, 868
BssT1I CCWWGG 1 cut(s) 134
Bst4CI ACNGT 1 cut(s) 362
Bst6I CTCTTC 2 cut(s) 224, 229
BstDSI CCRYGG 2 cut(s) 134, 429
BstKTI GATC 4 cut(s) 24, 214, 865, 871
BstMAI GTCTC 1 cut(s) 130
BstMBI GATC 4 cut(s) 21, 211, 862, 868
BstMCI CGRYCG 1 cut(s) 24
BstMWI GCNNNNNNNGC 1 cut(s) 495
BstNSI RCATGY 1 cut(s) 514
BstPAI GACNNNNGTC 1 cut(s) 848
BstSFI CTRYAG 1 cut(s) 682
BstV1I GCAGC 2 cut(s) 78, 476
BsuRI GGCC 2 cut(s) 51, 267
BtgI CCRYGG 2 cut(s) 134, 429
BtsIMutI CAGTG 2 cut(s) 102, 773
BveI ACCTGC 1 cut(s) 248
CciI TCATGA 1 cut(s) 865
Cfr13I GGNCC 1 cut(s) 810
CviAII CATG 5 cut(s) 135, 478, 511, 795, 866
CviJI RGCY 9 cut(s) 16, 51, 91, 133, 192, 267, 428, 436, 498
CviKI_1 RGCY 9 cut(s) 16, 51, 91, 133, 192, 267, 428, 436, 498
DpnI GATC 4 cut(s) 23, 213, 864, 870
DpnII GATC 4 cut(s) 21, 211, 862, 868
EaeI YGGCCR 1 cut(s) 49
Eam1104I CTCTTC 2 cut(s) 224, 229
EarI CTCTTC 2 cut(s) 224, 229
Ecl136II GAGCTC 1 cut(s) 436
Eco130I CCWWGG 1 cut(s) 134
Eco24I GRGCYC 1 cut(s) 438
Eco47I GGWCC 1 cut(s) 810
Eco53kI GAGCTC 1 cut(s) 436
EcoICRI GAGCTC 1 cut(s) 436
EcoO109I RGGNCCY 1 cut(s) 810
EcoT14I CCWWGG 1 cut(s) 134
EcoT22I ATGCAT 4 cut(s) 282, 331, 512, 739
EcoT38I GRGCYC 1 cut(s) 438
ErhI CCWWGG 1 cut(s) 134
FaeI CATG 5 cut(s) 138, 481, 514, 798, 869
FaqI GGGAC 2 cut(s) 823, 856
FatI CATG 5 cut(s) 134, 477, 510, 794, 865
FauI CCCGC 1 cut(s) 534
FbaI TGATCA 2 cut(s) 862, 868
FblI GTMKAC 1 cut(s) 681
Fnu4HI GCNGC 4 cut(s) 92, 112, 255, 490
FriOI GRGCYC 1 cut(s) 438
Fsp4HI GCNGC 4 cut(s) 92, 112, 255, 490
GluI GCNGC 4 cut(s) 92, 112, 255, 490
GsaI CCCAGC 1 cut(s) 551
GsuI CTGGAG 1 cut(s) 422
HaeIII GGCC 2 cut(s) 51, 267
HapII CCGG 1 cut(s) 27
Hin1II CATG 5 cut(s) 138, 481, 514, 798, 869
HincII GTYRAC 1 cut(s) 544
HindII GTYRAC 1 cut(s) 544
HinfI GANTC 5 cut(s) 79, 237, 641, 763, 849
HpaI GTTAAC 1 cut(s) 544
HpaII CCGG 1 cut(s) 27
HphI GGTGA 1 cut(s) 644
Hpy166II GTNNAC 2 cut(s) 544, 682
Hpy188I TCNGA 3 cut(s) 154, 224, 854
Hpy188III TCNNGA 3 cut(s) 284, 341, 866
Hpy8I GTNNAC 2 cut(s) 544, 682
Hpy99I CGWCG 1 cut(s) 158
HpyAV CCTTC 2 cut(s) 6, 704
HpyCH4III ACNGT 1 cut(s) 362
HpyCH4IV ACGT 1 cut(s) 621
HpyCH4V TGCA 8 cut(s) 173, 178, 186, 280, 329, 492, 510, 737
HpyF10VI GCNNNNNNNGC 1 cut(s) 495
HpySE526I ACGT 1 cut(s) 621
Hsp92II CATG 5 cut(s) 138, 481, 514, 798, 869
KflI GGGWCCC 1 cut(s) 810
Ksp22I TGATCA 2 cut(s) 862, 868
KspAI GTTAAC 1 cut(s) 544
Kzo9I GATC 4 cut(s) 21, 211, 862, 868
LmnI GCTCC 2 cut(s) 433, 441
LpnPI CCDG 8 cut(s) 40, 108, 175, 243, 447, 452, 561, 827
Lsp1109I GCAGC 2 cut(s) 78, 476
LweI GCATC 4 cut(s) 241, 289, 316, 338
MaeII ACGT 1 cut(s) 621
MaeIII GTNAC 2 cut(s) 356, 617
MalI GATC 4 cut(s) 23, 213, 864, 870
MboI GATC 4 cut(s) 21, 211, 862, 868
MfeI CAATTG 1 cut(s) 597
MhlI GDGCHC 1 cut(s) 438
MlsI TGGCCA 1 cut(s) 51
MluCI AATT 3 cut(s) 412, 597, 748
MluNI TGGCCA 1 cut(s) 51
MlyI GAGTC 2 cut(s) 246, 858
MmeI TCCRAC 2 cut(s) 177, 832
Mox20I TGGCCA 1 cut(s) 51
Mph1103I ATGCAT 4 cut(s) 282, 331, 512, 739
MscI TGGCCA 1 cut(s) 51
MseI TTAA 2 cut(s) 543, 726
Msp20I TGGCCA 1 cut(s) 51
MspI CCGG 1 cut(s) 27
MunI CAATTG 1 cut(s) 597
MwoI GCNNNNNNNGC 1 cut(s) 495
NcoI CCATGG 1 cut(s) 134
NdeII GATC 4 cut(s) 21, 211, 862, 868
NlaIII CATG 5 cut(s) 138, 481, 514, 798, 869
NlaIV GGNNCC 2 cut(s) 811, 812
NsiI ATGCAT 4 cut(s) 282, 331, 512, 739
NspI RCATGY 1 cut(s) 514
PagI TCATGA 1 cut(s) 865
PfeI GAWTC 3 cut(s) 79, 641, 763
PflMI CCANNNNNTGG 1 cut(s) 838
PkrI GCNGC 4 cut(s) 93, 113, 256, 491
Ple19I CGATCG 1 cut(s) 24
PleI GAGTC 2 cut(s) 245, 857
PpsI GAGTC 2 cut(s) 245, 857
PpuMI RGGWCCY 1 cut(s) 810
PshAI GACNNNNGTC 1 cut(s) 848
Psp124BI GAGCTC 1 cut(s) 438
Psp5II RGGWCCY 1 cut(s) 810
PspFI CCCAGC 1 cut(s) 547
PspN4I GGNNCC 2 cut(s) 811, 812
PspPI GGNCC 1 cut(s) 810
PspPPI RGGWCCY 1 cut(s) 810
PvuI CGATCG 1 cut(s) 24
SacI GAGCTC 1 cut(s) 438
SaqAI TTAA 2 cut(s) 543, 726
SatI GCNGC 4 cut(s) 92, 112, 255, 490
Sau3AI GATC 4 cut(s) 21, 211, 862, 868
Sau96I GGNCC 1 cut(s) 810
SchI GAGTC 2 cut(s) 246, 858
SduI GDGCHC 1 cut(s) 438
SetI ASST 6 cut(s) 262, 438, 466, 609, 624, 666
SfaNI GCATC 4 cut(s) 241, 289, 316, 338
SfcI CTRYAG 1 cut(s) 682
SinI GGWCC 1 cut(s) 810
SmlI CTYRAG 1 cut(s) 85
SmoI CTYRAG 1 cut(s) 85
Sse9I AATT 3 cut(s) 412, 597, 748
SsiI CCGC 3 cut(s) 112, 255, 527
SstI GAGCTC 1 cut(s) 438
StyI CCWWGG 1 cut(s) 134
TaaI ACNGT 1 cut(s) 362
TaiI ACGT 1 cut(s) 624
TaqI TCGA 2 cut(s) 366, 372
TasI AATT 3 cut(s) 412, 597, 748
TauI GCSGC 2 cut(s) 114, 257
TfiI GAWTC 3 cut(s) 79, 641, 763
Tru1I TTAA 2 cut(s) 543, 726
Tru9I TTAA 2 cut(s) 543, 726
TscAI CASTG 2 cut(s) 102, 773
TseI GCWGC 2 cut(s) 91, 489
TspDTI ATGAA 1 cut(s) 723
TspGWI ACGGA 2 cut(s) 446, 686
TspRI CASTG 2 cut(s) 102, 773
Van91I CCANNNNNTGG 1 cut(s) 838
VpaK11BI GGWCC 1 cut(s) 810
XceI RCATGY 1 cut(s) 514
XmiI GTMKAC 1 cut(s) 681
Zsp2I ATGCAT 4 cut(s) 282, 331, 512, 739
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.