Rorug02G0075900

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000111
Physical Location & Seq
Reverse (-)
5997681 .. 6011271
13591 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0075900.1

Sequence Viewer

Length: 1473 bp
ATGGGTTCCGATACATTACCCATGAAACCGTCCCCGATTCCGACCCAAGACGACGACCCGCCGAACCCATCTGCGGCTCTGCTCTCTTTCAACACAGACTCGACCTCTTCAACTTCAACCCCTTCTCACAAATCCACCATCGTCTTCATCTCTCTATTACTCGTAACCTGCATAGCTCTCTCTGCTGCTGCAGCTTTCGCTTTCCTCTTCTTCTCGAACCCATCAAACACCACCACCACACCCACCTCCACCATCACTTCAATCGACTCAAAGGCTCGGCCTTTAGCCAAGTTGAACCATCCGGTGGTGATCTTGGTCTCCTCAGATGGGTTTAGATTTGGTTACCAATTCAAGACCCCAACTCCAAATATTCATCGCCTCATAGCAAATGGGACTGAAGCCGAAACGGGTCTGATTCCGGTCTTCCCAACTCTTACTTTTCCTAATCACTACTCTATTGTCACAGGTCTTTACCCAGCTCACCATGGAATCGTCAACAACCACTTTGTGGATCCCTACACTGGGGAGTTCTTCAATATGGGAAGCCATGAGCCCAAGTGGTGGCTCGGCGAGCCGCTGTGGGAGACTGTGGTGAACCACGGTTTGAAGGCTGCTACGTATTTCTGGCCGGGTGCTGAGGTAAAGAAAGGTTCTTGGACTTGCCCTGAAAAGTTTTGTCAACAATATAATGGTTCTGTTCCTTTTGAGGAGCGGGTTGATACTACTCTAGGGTTCTTTGATTTGCCTAGTAGTGAGATTCCTTATTTTATGACACTGTATTTTGAGGACCCTGATCATCAGGGCCACCAGGTTGGGCCTGATGATCCCGAGATTACTGAGGCTGTTGCCAACATTGATAGGATGATTGGGAGGTTGATTGAGGGTTTGGAGAAAAGAGGTGTTTTCGAGGATGTGACGATTATTATGGTGGGTGATCATGGGATGGTTGGTACTTGTGATAAGAAGTTGATTTTCCTGGAGGATCTGGCCTCTTGGATTGAAATTCCGGCGAGTTGGGTCCAGTCGTATACTCCATTGCTTGCAATTCGTCCCCCCGCAGGAGTTGATACTGCGGATGTCGTGGCTAAGATGAATGAAGGTTTGAGTTCGGGGAAGGTTAAGAATGGGAAGCAATTGAAAATGTATCTCAAGGAGAAGCTTCCTAGTCGGTTACATTATGCAGCGAGTGATCGAATTCCTCCGATTATAGGGTTGGTCGAAGAGGGATTTAAGATAGAACAGAAGAGCTCAAAGAGGCAAGAATGTGGAGGAGCACATGGTTATGATAATGCTGTGTTTTCCATGAGGACGATATTCATTGGCCATGGTCCTCAGTTTGCAAGAGGGCGCAAGGTTCCTAGTTTTGAAAATGTCCAGATATACAACTTGGTCACTAAGATTCTCAATATCCAGGGTGCACCTAACAATGGATCTGAATCATTTCCAAAGTCTATTCTTTTGCCTAGTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

490

Amino Acids

53.85

Weight (kDa)

5.84

Isoelectric Point (pI)

36.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Phosphodiest PF01663 103 - 429 9.2e-111 Type I phosphodiesterase / nucleotide pyrophosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 176
AccB7I CCANNNNNTGG 3 cut(s) 304, 508, 561
AccBSI CCGCTC 1 cut(s) 712
AccI GTMKAC 1 cut(s) 1028
AciI CCGC 6 cut(s) 59, 74, 575, 712, 1056, 1073
AclWI GGATC 5 cut(s) 506, 519, 818, 990, 1438
AcoI YGGCCR 2 cut(s) 626, 1321
AcsI RAATTY 2 cut(s) 1002, 1194
AcuI CTGAAG 1 cut(s) 417
AdeI CACNNNGTG 1 cut(s) 508
AfaI GTAC 1 cut(s) 952
AjnI CCWGG 3 cut(s) 807, 975, 1410
AluBI AGCT 5 cut(s) 176, 194, 479, 1159, 1248
AluI AGCT 5 cut(s) 176, 194, 479, 1159, 1248
Alw21I GWGCWC 3 cut(s) 1250, 1276, 1420
Alw26I GTCTC 2 cut(s) 322, 578
Alw44I GTGCAC 1 cut(s) 1416
AlwI GGATC 5 cut(s) 506, 519, 818, 990, 1438
Ama87I CYCGRG 1 cut(s) 827
AoxI GGCC 6 cut(s) 278, 626, 802, 815, 987, 1321
ApaLI GTGCAC 1 cut(s) 1416
ApeKI GCWGC 5 cut(s) 185, 188, 191, 611, 1181
ApoI RAATTY 2 cut(s) 1002, 1194
Asp700I GAANNNNTTC 1 cut(s) 1440
AspLEI GCGC 1 cut(s) 1350
AspS9I GGNCC 5 cut(s) 787, 802, 815, 1018, 1328
AsuC2I CCSGG 1 cut(s) 630
AsuHPI GGTGA 4 cut(s) 319, 473, 604, 944
AvaI CYCGRG 1 cut(s) 827
AvaII GGWCC 3 cut(s) 787, 1018, 1328
BaeGI GKGCMC 1 cut(s) 1420
BalI TGGCCA 1 cut(s) 1323
BamHI GGATCC 1 cut(s) 511
BanII GRGCYC 2 cut(s) 555, 1250
BbsI GAAGAC 2 cut(s) 136, 415
Bbv12I GWGCWC 3 cut(s) 1250, 1276, 1420
BbvCI CCTCAGC 1 cut(s) 636
BbvI GCAGC 5 cut(s) 172, 175, 203, 598, 1193
BccI CCATC 7 cut(s) 76, 146, 229, 260, 306, 320, 937
BciT130I CCWGG 3 cut(s) 809, 977, 1412
BclI TGATCA 2 cut(s) 793, 934
BcnI CCSGG 1 cut(s) 630
BcoDI GTCTC 2 cut(s) 322, 578
BfaI CTAG 5 cut(s) 728, 747, 1164, 1359, 1464
BfmI CTRYAG 1 cut(s) 189
BfuAI ACCTGC 1 cut(s) 176
BisI GCNGC 7 cut(s) 75, 186, 189, 192, 575, 612, 1182
BlsI GCNGC 7 cut(s) 76, 187, 190, 193, 576, 613, 1183
Bme1390I CCNGG 4 cut(s) 630, 809, 977, 1412
Bme18I GGWCC 3 cut(s) 787, 1018, 1328
BmeT110I CYCGRG 1 cut(s) 827
BmgT120I GGNCC 5 cut(s) 787, 802, 815, 1018, 1328
BmiI GGNNCC 5 cut(s) 7, 513, 789, 1019, 1356
BmrFI CCNGG 4 cut(s) 630, 809, 977, 1412
BmrI ACTGGG 1 cut(s) 531
BmuI ACTGGG 1 cut(s) 531
BpiI GAAGAC 2 cut(s) 136, 415
BpmI CTGGAG 1 cut(s) 998
Bpu10I CCTNAGC 1 cut(s) 636
BpuEI CTTGAG 1 cut(s) 1133
BpuMI CCSGG 1 cut(s) 630
BsaAI YACGTR 1 cut(s) 618
BsaBI GATNNNNATC 1 cut(s) 1435
BsaI GGTCTC 1 cut(s) 322
BsaJI CCNNGG 4 cut(s) 484, 598, 1324, 1411
BsaWI WCCGGW 2 cut(s) 301, 418
BsaXI ACNNNNNCTCC 2 cut(s) 346, 376
Bse1I ACTGG 2 cut(s) 526, 1021
Bse3DI GCAATG 1 cut(s) 1034
Bse8I GATNNNNATC 1 cut(s) 1435
BseBI CCWGG 3 cut(s) 809, 977, 1412
BseDI CCNNGG 4 cut(s) 484, 598, 1324, 1411
BseGI GGATG 5 cut(s) 298, 867, 916, 948, 1081
BseJI GATNNNNATC 1 cut(s) 1435
BseMI GCAATG 1 cut(s) 1034
BseMII CTCAG 4 cut(s) 336, 627, 828, 1346
BseNI ACTGG 2 cut(s) 526, 1021
BseRI GAGGAG 3 cut(s) 310, 722, 1284
BseSI GKGCMC 1 cut(s) 1420
BseXI GCAGC 5 cut(s) 172, 175, 203, 598, 1193
BseYI CCCAGC 1 cut(s) 475
BshFI GGCC 6 cut(s) 280, 628, 804, 817, 989, 1323
BsiHKAI GWGCWC 3 cut(s) 1250, 1276, 1420
BsiHKCI CYCGRG 1 cut(s) 827
BsiSI CCGG 4 cut(s) 302, 419, 629, 1007
BslFI GGGAC 3 cut(s) 16, 406, 1035
BsmAI GTCTC 2 cut(s) 322, 578
BsmFI GGGAC 3 cut(s) 16, 406, 1035
BsnI GGCC 6 cut(s) 280, 628, 804, 817, 989, 1323
Bso31I GGTCTC 1 cut(s) 322
BsoBI CYCGRG 1 cut(s) 827
Bsp1286I GDGCHC 4 cut(s) 555, 1250, 1276, 1420
Bsp143I GATC 8 cut(s) 309, 511, 793, 823, 934, 982, 1189, 1430
Bsp19I CCATGG 2 cut(s) 484, 1324
BspACI CCGC 6 cut(s) 59, 74, 575, 712, 1056, 1073
BspANI GGCC 6 cut(s) 280, 628, 804, 817, 989, 1323
BspCNI CTCAG 4 cut(s) 335, 628, 829, 1345
BspLI GGNNCC 5 cut(s) 7, 513, 789, 1019, 1356
BspMAI CTGCAG 1 cut(s) 193
BspMI ACCTGC 1 cut(s) 176
BspPI GGATC 5 cut(s) 506, 519, 818, 990, 1438
BspQI GCTCTTC 1 cut(s) 1238
BspTNI GGTCTC 1 cut(s) 322
BsrBI CCGCTC 1 cut(s) 712
BsrDI GCAATG 1 cut(s) 1034
BsrI ACTGG 2 cut(s) 526, 1021
BssECI CCNNGG 4 cut(s) 484, 598, 1324, 1411
BssMI GATC 8 cut(s) 309, 511, 793, 823, 934, 982, 1189, 1430
BssNAI GTATAC 1 cut(s) 1029
BssT1I CCWWGG 2 cut(s) 484, 1324
Bst1107I GTATAC 1 cut(s) 1029
Bst2UI CCWGG 3 cut(s) 809, 977, 1412
Bst4CI ACNGT 4 cut(s) 30, 589, 602, 777
Bst6I CTCTTC 4 cut(s) 112, 212, 1215, 1238
BstBAI YACGTR 1 cut(s) 618
BstC8I GCNNGC 2 cut(s) 572, 1041
BstDEI CTNAG 7 cut(s) 322, 636, 837, 1086, 1332, 1395, 1470
BstDSI CCRYGG 3 cut(s) 484, 598, 1324
BstEII GGTNACC 1 cut(s) 341
BstF5I GGATG 5 cut(s) 298, 867, 916, 948, 1081
BstHHI GCGC 1 cut(s) 1350
BstKTI GATC 8 cut(s) 312, 514, 796, 826, 937, 985, 1192, 1433
BstMAI GTCTC 2 cut(s) 322, 578
BstMBI GATC 8 cut(s) 309, 511, 793, 823, 934, 982, 1189, 1430
BstMWI GCNNNNNNNGC 4 cut(s) 182, 191, 197, 571
BstNI CCWGG 3 cut(s) 809, 977, 1412
BstPI GGTNACC 1 cut(s) 341
BstSCI CCNGG 4 cut(s) 628, 807, 975, 1410
BstSFI CTRYAG 1 cut(s) 189
BstSLI GKGCMC 1 cut(s) 1420
BstSNI TACGTA 1 cut(s) 618
BstV1I GCAGC 5 cut(s) 172, 175, 203, 598, 1193
BstV2I GAAGAC 2 cut(s) 136, 415
BstX2I RGATCY 3 cut(s) 511, 982, 1430
BstXI CCANNNNNNTGG 1 cut(s) 812
BstYI RGATCY 3 cut(s) 511, 982, 1430
BstZ17I GTATAC 1 cut(s) 1029
BsuRI GGCC 6 cut(s) 280, 628, 804, 817, 989, 1323
BtgI CCRYGG 3 cut(s) 484, 598, 1324
BtgZI GCGATG 1 cut(s) 359
BtsCI GGATG 5 cut(s) 298, 867, 916, 948, 1081
BtsIMutI CAGTG 2 cut(s) 519, 773
BveI ACCTGC 1 cut(s) 176
Cac8I GCNNGC 2 cut(s) 572, 1041
CfoI GCGC 1 cut(s) 1350
Cfr13I GGNCC 5 cut(s) 787, 802, 815, 1018, 1328
CsiI ACCWGGT 1 cut(s) 807
Csp6I GTAC 1 cut(s) 951
CviAII CATG 7 cut(s) 22, 485, 548, 938, 1277, 1303, 1325
CviQI GTAC 1 cut(s) 951
DdeI CTNAG 7 cut(s) 322, 636, 837, 1086, 1332, 1395, 1470
DpnI GATC 8 cut(s) 311, 513, 795, 825, 936, 984, 1191, 1432
DpnII GATC 8 cut(s) 309, 511, 793, 823, 934, 982, 1189, 1430
DraIII CACNNNGTG 1 cut(s) 508
EaeI YGGCCR 2 cut(s) 626, 1321
Eam1104I CTCTTC 4 cut(s) 112, 212, 1215, 1238
EarI CTCTTC 4 cut(s) 112, 212, 1215, 1238
Ecl136II GAGCTC 1 cut(s) 1248
Eco105I TACGTA 1 cut(s) 618
Eco130I CCWWGG 2 cut(s) 484, 1324
Eco24I GRGCYC 2 cut(s) 555, 1250
Eco31I GGTCTC 1 cut(s) 322
Eco47I GGWCC 3 cut(s) 787, 1018, 1328
Eco53kI GAGCTC 1 cut(s) 1248
Eco57I CTGAAG 1 cut(s) 417
Eco88I CYCGRG 1 cut(s) 827
Eco91I GGTNACC 1 cut(s) 341
EcoICRI GAGCTC 1 cut(s) 1248
EcoO109I RGGNCCY 1 cut(s) 787
EcoO65I GGTNACC 1 cut(s) 341
EcoRI GAATTC 1 cut(s) 1194
EcoRII CCWGG 3 cut(s) 807, 975, 1410
EcoT14I CCWWGG 2 cut(s) 484, 1324
EcoT38I GRGCYC 2 cut(s) 555, 1250
ErhI CCWWGG 2 cut(s) 484, 1324
FaeI CATG 7 cut(s) 25, 488, 551, 941, 1280, 1306, 1328
FaqI GGGAC 3 cut(s) 16, 406, 1035
FatI CATG 7 cut(s) 21, 484, 547, 937, 1276, 1302, 1324
FauI CCCGC 3 cut(s) 66, 705, 1063
FbaI TGATCA 2 cut(s) 793, 934
FblI GTMKAC 1 cut(s) 1028
Fnu4HI GCNGC 7 cut(s) 75, 186, 189, 192, 575, 612, 1182
FokI GGATG 5 cut(s) 285, 874, 923, 955, 1088
FriOI GRGCYC 2 cut(s) 555, 1250
Fsp4HI GCNGC 7 cut(s) 75, 186, 189, 192, 575, 612, 1182
FspBI CTAG 5 cut(s) 728, 747, 1164, 1359, 1464
GlaI GCGC 1 cut(s) 1349
GluI GCNGC 7 cut(s) 75, 186, 189, 192, 575, 612, 1182
GsaI CCCAGC 1 cut(s) 479
GsuI CTGGAG 1 cut(s) 998
HaeIII GGCC 6 cut(s) 280, 628, 804, 817, 989, 1323
HapII CCGG 4 cut(s) 302, 419, 629, 1007
HhaI GCGC 1 cut(s) 1350
Hin1II CATG 7 cut(s) 25, 488, 551, 941, 1280, 1306, 1328
Hin6I GCGC 1 cut(s) 1348
HinP1I GCGC 1 cut(s) 1348
HincII GTYRAC 2 cut(s) 496, 680
HindII GTYRAC 2 cut(s) 496, 680
HindIII AAGCTT 1 cut(s) 1157
HinfI GANTC 8 cut(s) 37, 98, 266, 415, 489, 757, 1399, 1436
HpaII CCGG 4 cut(s) 302, 419, 629, 1007
HphI GGTGA 4 cut(s) 319, 473, 604, 944
Hpy166II GTNNAC 5 cut(s) 496, 595, 680, 1029, 1418
Hpy188I TCNGA 6 cut(s) 10, 42, 325, 414, 1203, 1435
Hpy188III TCNNGA 4 cut(s) 214, 352, 827, 1375
Hpy8I GTNNAC 5 cut(s) 496, 595, 680, 1029, 1418
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 4 cut(s) 132, 601, 1091, 1108
HpyCH4III ACNGT 4 cut(s) 30, 589, 602, 777
HpyCH4IV ACGT 1 cut(s) 617
HpyCH4V TGCA 6 cut(s) 171, 191, 1043, 1181, 1340, 1418
HpyF10VI GCNNNNNNNGC 4 cut(s) 182, 191, 197, 571
HpyF3I CTNAG 7 cut(s) 322, 636, 837, 1086, 1332, 1395, 1470
HpySE526I ACGT 1 cut(s) 617
Hsp92II CATG 7 cut(s) 25, 488, 551, 941, 1280, 1306, 1328
HspAI GCGC 1 cut(s) 1348
Ksp22I TGATCA 2 cut(s) 793, 934
Kzo9I GATC 8 cut(s) 309, 511, 793, 823, 934, 982, 1189, 1430
LguI GCTCTTC 1 cut(s) 1238
LmnI GCTCC 2 cut(s) 709, 1271
Lsp1109I GCAGC 5 cut(s) 172, 175, 203, 598, 1193
MabI ACCWGGT 1 cut(s) 807
MaeI CTAG 5 cut(s) 728, 747, 1164, 1359, 1464
MaeII ACGT 1 cut(s) 617
MaeIII GTNAC 6 cut(s) 163, 341, 460, 913, 1170, 1390
MalI GATC 8 cut(s) 311, 513, 795, 825, 936, 984, 1191, 1432
MbiI CCGCTC 1 cut(s) 712
MboI GATC 8 cut(s) 309, 511, 793, 823, 934, 982, 1189, 1430
MboII GAAGA 8 cut(s) 99, 136, 199, 202, 415, 523, 1232, 1255
MfeI CAATTG 1 cut(s) 1133
MflI RGATCY 3 cut(s) 511, 982, 1430
MhlI GDGCHC 4 cut(s) 555, 1250, 1276, 1420
MlsI TGGCCA 1 cut(s) 1323
MluCI AATT 5 cut(s) 347, 1002, 1044, 1133, 1194
MluNI TGGCCA 1 cut(s) 1323
MlyI GAGTC 2 cut(s) 92, 260
MmeI TCCRAC 1 cut(s) 65
Mox20I TGGCCA 1 cut(s) 1323
MroXI GAANNNNTTC 1 cut(s) 1440
MscI TGGCCA 1 cut(s) 1323
MseI TTAA 2 cut(s) 1119, 1230
MslI CAYNNNNRTG 1 cut(s) 1281
Msp20I TGGCCA 1 cut(s) 1323
MspA1I CMGCKG 1 cut(s) 577
MspI CCGG 4 cut(s) 302, 419, 629, 1007
MspR9I CCNGG 4 cut(s) 630, 809, 977, 1412
MunI CAATTG 1 cut(s) 1133
MvaI CCWGG 3 cut(s) 809, 977, 1412
MwoI GCNNNNNNNGC 4 cut(s) 182, 191, 197, 571
NciI CCSGG 1 cut(s) 630
NcoI CCATGG 2 cut(s) 484, 1324
NdeII GATC 8 cut(s) 309, 511, 793, 823, 934, 982, 1189, 1430
NlaIII CATG 7 cut(s) 25, 488, 551, 941, 1280, 1306, 1328
NlaIV GGNNCC 5 cut(s) 7, 513, 789, 1019, 1356
NmeAIII GCCGAG 2 cut(s) 256, 546
NmuCI GTSAC 3 cut(s) 460, 913, 1390
PciSI GCTCTTC 1 cut(s) 1238
PdmI GAANNNNTTC 1 cut(s) 1440
PfeI GAWTC 6 cut(s) 37, 415, 489, 757, 1399, 1436
PflMI CCANNNNNTGG 3 cut(s) 304, 508, 561
PfoI TCCNGGA 1 cut(s) 975
PkrI GCNGC 7 cut(s) 76, 187, 190, 193, 576, 613, 1183
PleI GAGTC 2 cut(s) 92, 260
PpsI GAGTC 2 cut(s) 92, 260
Ppu21I YACGTR 1 cut(s) 618
PpuMI RGGWCCY 1 cut(s) 787
Psp124BI GAGCTC 1 cut(s) 1250
Psp5II RGGWCCY 1 cut(s) 787
Psp6I CCWGG 3 cut(s) 807, 975, 1410
PspEI GGTNACC 1 cut(s) 341
PspFI CCCAGC 1 cut(s) 475
PspGI CCWGG 3 cut(s) 807, 975, 1410
PspN4I GGNNCC 5 cut(s) 7, 513, 789, 1019, 1356
PspPI GGNCC 5 cut(s) 787, 802, 815, 1018, 1328
PspPPI RGGWCCY 1 cut(s) 787
PstI CTGCAG 1 cut(s) 193
PsuI RGATCY 3 cut(s) 511, 982, 1430
RsaI GTAC 1 cut(s) 952
RsaNI GTAC 1 cut(s) 951
RseI CAYNNNNRTG 1 cut(s) 1281
SacI GAGCTC 1 cut(s) 1250
SapI GCTCTTC 1 cut(s) 1238
SaqAI TTAA 2 cut(s) 1119, 1230
SatI GCNGC 7 cut(s) 75, 186, 189, 192, 575, 612, 1182
Sau3AI GATC 8 cut(s) 309, 511, 793, 823, 934, 982, 1189, 1430
Sau96I GGNCC 5 cut(s) 787, 802, 815, 1018, 1328
SchI GAGTC 2 cut(s) 92, 260
ScrFI CCNGG 4 cut(s) 630, 809, 977, 1412
SduI GDGCHC 4 cut(s) 555, 1250, 1276, 1420
SexAI ACCWGGT 1 cut(s) 807
SfcI CTRYAG 1 cut(s) 189
SinI GGWCC 3 cut(s) 787, 1018, 1328
SmiMI CAYNNNNRTG 1 cut(s) 1281
SmlI CTYRAG 1 cut(s) 1148
SmoI CTYRAG 1 cut(s) 1148
SnaBI TACGTA 1 cut(s) 618
Sse9I AATT 5 cut(s) 347, 1002, 1044, 1133, 1194
SsiI CCGC 6 cut(s) 59, 74, 575, 712, 1056, 1073
SspI AATATT 1 cut(s) 370
SspMI CTAG 5 cut(s) 728, 747, 1164, 1359, 1464
SstI GAGCTC 1 cut(s) 1250
StyD4I CCNGG 4 cut(s) 628, 807, 975, 1410
StyI CCWWGG 2 cut(s) 484, 1324
TaaI ACNGT 4 cut(s) 30, 589, 602, 777
TaiI ACGT 1 cut(s) 620
TaqI TCGA 6 cut(s) 101, 215, 264, 906, 1192, 1218
TasI AATT 5 cut(s) 347, 1002, 1044, 1133, 1194
TauI GCSGC 2 cut(s) 77, 577
TfiI GAWTC 6 cut(s) 37, 415, 489, 757, 1399, 1436
Tru1I TTAA 2 cut(s) 1119, 1230
Tru9I TTAA 2 cut(s) 1119, 1230
TscAI CASTG 2 cut(s) 526, 780
TseFI GTSAC 3 cut(s) 460, 913, 1390
TseI GCWGC 5 cut(s) 185, 188, 191, 611, 1181
Tsp45I GTSAC 3 cut(s) 460, 913, 1390
TspDTI ATGAA 6 cut(s) 38, 136, 362, 1106, 1110, 1306
TspRI CASTG 2 cut(s) 526, 780
Van91I CCANNNNNTGG 3 cut(s) 304, 508, 561
VneI GTGCAC 1 cut(s) 1416
VpaK11BI GGWCC 3 cut(s) 787, 1018, 1328
XapI RAATTY 2 cut(s) 1002, 1194
XmiI GTMKAC 1 cut(s) 1028
XmnI GAANNNNTTC 1 cut(s) 1440
XspI CTAG 5 cut(s) 728, 747, 1164, 1359, 1464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.