Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000111

Physical Location & Seq

Genomic Coordinates Reverse (-)

20438650 .. 20440599

Gene Structure 1950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG185800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGTTGCTTCAGACCATCCTTGTCAGTTAAAGAACTATACAGCATATCACGAGCCTTTCAATGTGAAGCCACCACGTTCAGCTCTAGCTGCCTCATATGTGACTCTCGTGGATTTGGTCTACTATAGAAATCACGGTCCTATTCAAATAATCGATGACATCCACAGACGTGTGTTCTGTTGTTTGGTTGTGATGGGATCTGATTGGTATGGATTACACAGTGCAGGTTATATAAGGGAAACTACGAGCAAAACTCCGACTGTCCGGGGAGTAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005777 GO:0006725 GO:0006778 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008482 GO:0009987 GO:0010035 GO:0010477 GO:0015994 GO:0016491 GO:0016667 GO:0016670 GO:0033013 GO:0042221 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051186 GO:0055114 GO:0071704 GO:1901360 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00920 ko01100 ko01120 map00920 map01100 map01120

Pfam Domains

Protein Families

Mo-co_dimer Oxidored_molyb

Protein Analysis

92

Amino Acids

10.42

Weight (kDa)

8.51

Isoelectric Point (pI)

19.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06240
fragaria_vesca	FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica	MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica	Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis	pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis	RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata	RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora	Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii	Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa	Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha	Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana	Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	215
AccI	GTMKAC	1 cut(s)	120
AclWI	GGATC	1 cut(s)	205
AflIII	ACRYGT	1 cut(s)	169
AgsI	TTSAA	2 cut(s)	61, 146
AjiI	CACGTC	1 cut(s)	170
AleI	CACNNNNGTG	1 cut(s)	168
AluBI	AGCT	2 cut(s)	83, 89
AluI	AGCT	2 cut(s)	83, 89
AlwI	GGATC	1 cut(s)	205
ApeKI	GCWGC	1 cut(s)	89
AspS9I	GGNCC	1 cut(s)	137
AsuC2I	CCSGG	1 cut(s)	266
AvaII	GGWCC	1 cut(s)	137
BauI	CACGAG	2 cut(s)	50, 107
BbvI	GCAGC	1 cut(s)	76
BccI	CCATC	2 cut(s)	24, 187
BcnI	CCSGG	1 cut(s)	266
BfaI	CTAG	1 cut(s)	86
BfmI	CTRYAG	1 cut(s)	124
BfuAI	ACCTGC	1 cut(s)	215
BisI	GCNGC	1 cut(s)	90
BlsI	GCNGC	1 cut(s)	91
Bme1390I	CCNGG	1 cut(s)	266
Bme18I	GGWCC	1 cut(s)	137
BmgBI	CACGTC	1 cut(s)	170
BmgT120I	GGNCC	1 cut(s)	137
BmrFI	CCNGG	1 cut(s)	266
BplI	GAGNNNNNCTC	2 cut(s)	238, 270
BpuMI	CCSGG	1 cut(s)	266
Bsa29I	ATCGAT	1 cut(s)	153
BsaJI	CCNNGG	1 cut(s)	265
BseCI	ATCGAT	1 cut(s)	153
BseDI	CCNNGG	1 cut(s)	265
BseGI	GGATG	2 cut(s)	16, 159
BseXI	GCAGC	1 cut(s)	76
BsgI	GTGCAG	1 cut(s)	243
BshVI	ATCGAT	1 cut(s)	153
BsiSI	CCGG	1 cut(s)	265
Bsp143I	GATC	1 cut(s)	197
BspDI	ATCGAT	1 cut(s)	153
BspMI	ACCTGC	1 cut(s)	215
BspPI	GGATC	1 cut(s)	205
BssECI	CCNNGG	1 cut(s)	265
BssMI	GATC	1 cut(s)	197
BssSI	CACGAG	2 cut(s)	50, 107
Bst2BI	CACGAG	2 cut(s)	50, 107
Bst4CI	ACNGT	3 cut(s)	137, 221, 262
BstF5I	GGATG	2 cut(s)	16, 159
BstKTI	GATC	1 cut(s)	200
BstMBI	GATC	1 cut(s)	197
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstSCI	CCNGG	1 cut(s)	264
BstSFI	CTRYAG	1 cut(s)	124
BstV1I	GCAGC	1 cut(s)	76
BstX2I	RGATCY	1 cut(s)	197
BstYI	RGATCY	1 cut(s)	197
Bsu15I	ATCGAT	1 cut(s)	153
BsuTUI	ATCGAT	1 cut(s)	153
BtrI	CACGTC	1 cut(s)	170
BtsCI	GGATG	2 cut(s)	16, 159
BtsIMutI	CAGTG	1 cut(s)	226
BveI	ACCTGC	1 cut(s)	215
Cfr13I	GGNCC	1 cut(s)	137
ClaI	ATCGAT	1 cut(s)	153
CviJI	RGCY	4 cut(s)	55, 70, 83, 89
CviKI_1	RGCY	4 cut(s)	55, 70, 83, 89
DpnI	GATC	1 cut(s)	199
DpnII	GATC	1 cut(s)	197
Eco47I	GGWCC	1 cut(s)	137
FaiI	YATR	9 cut(s)	39, 46, 97, 99, 126, 210, 231, 233, 277
FauNDI	CATATG	1 cut(s)	97
FblI	GTMKAC	1 cut(s)	120
Fnu4HI	GCNGC	1 cut(s)	90
FokI	GGATG	2 cut(s)	3, 146
Fsp4HI	GCNGC	1 cut(s)	90
FspBI	CTAG	1 cut(s)	86
GluI	GCNGC	1 cut(s)	90
HapII	CCGG	1 cut(s)	265
HinfI	GANTC	1 cut(s)	103
HpaII	CCGG	1 cut(s)	265
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	3 cut(s)	13, 202, 258
Hpy188III	TCNNGA	1 cut(s)	50
Hpy8I	GTNNAC	1 cut(s)	121
HpyCH4III	ACNGT	3 cut(s)	137, 221, 262
HpyCH4IV	ACGT	2 cut(s)	76, 169
HpyCH4V	TGCA	1 cut(s)	224
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
HpySE526I	ACGT	2 cut(s)	76, 169
Kzo9I	GATC	1 cut(s)	197
LpnPI	CCDG	1 cut(s)	210
Lsp1109I	GCAGC	1 cut(s)	76
MaeI	CTAG	1 cut(s)	86
MaeII	ACGT	2 cut(s)	76, 169
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	1 cut(s)	199
MboI	GATC	1 cut(s)	197
MflI	RGATCY	1 cut(s)	197
MlyI	GAGTC	1 cut(s)	97
MnlI	CCTC	1 cut(s)	103
MseI	TTAA	1 cut(s)	29
MslI	CAYNNNNRTG	1 cut(s)	168
MspI	CCGG	1 cut(s)	265
MspR9I	CCNGG	1 cut(s)	266
MwoI	GCNNNNNNNGC	1 cut(s)	89
NciI	CCSGG	1 cut(s)	266
NdeI	CATATG	1 cut(s)	97
NdeII	GATC	1 cut(s)	197
NmuCI	GTSAC	1 cut(s)	100
OliI	CACNNNNGTG	1 cut(s)	168
PkrI	GCNGC	1 cut(s)	91
PleI	GAGTC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	97
PspPI	GGNCC	1 cut(s)	137
PsuI	RGATCY	1 cut(s)	197
RseI	CAYNNNNRTG	1 cut(s)	168
SaqAI	TTAA	1 cut(s)	29
SatI	GCNGC	1 cut(s)	90
Sau3AI	GATC	1 cut(s)	197
Sau96I	GGNCC	1 cut(s)	137
SchI	GAGTC	1 cut(s)	97
ScrFI	CCNGG	1 cut(s)	266
SetI	ASST	5 cut(s)	79, 85, 91, 172, 229
SfcI	CTRYAG	1 cut(s)	124
SinI	GGWCC	1 cut(s)	137
SmiMI	CAYNNNNRTG	1 cut(s)	168
SspMI	CTAG	1 cut(s)	86
StyD4I	CCNGG	1 cut(s)	264
TaaI	ACNGT	3 cut(s)	137, 221, 262
TaiI	ACGT	2 cut(s)	79, 172
TaqI	TCGA	1 cut(s)	153
Tru1I	TTAA	1 cut(s)	29
Tru9I	TTAA	1 cut(s)	29
TscAI	CASTG	1 cut(s)	226
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	1 cut(s)	89
Tsp45I	GTSAC	1 cut(s)	100
TspRI	CASTG	1 cut(s)	226
VpaK11BI	GGWCC	1 cut(s)	137
XmiI	GTMKAC	1 cut(s)	120
XspI	CTAG	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.