Rroxscaffold_2G00150630

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000111
Physical Location & Seq
Reverse (-)
88001652 .. 88005587
3936 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00150630.1

Sequence Viewer

Length: 354 bp
ATGCAGATCTCCATTCCATATCATCAGTTATCACATTCTGGTTTTTGGAGAGGATCTTATGATTTGATGGTGTTTGATAGATCATCATTAGTTTTGTACAATTTTGATGATGAGAAAATTTGGACTTTATCAATTCGCGATATTGCTAGAGTTGGTAGTTTTAGTAACACTGGTATCTATGTGGAGAGCCTTGCTTCACTTATTGATCAAGATCATGAGAGAACTAAAGAATACAAAGCAGCCACCTTTGCTTGTTCGACATCATTTTCAATCTGGAAGGCGCCGATCTACCAAAGGCCCCAACTTCCCAATAGGGATCAGTGGGCACTTGGCATTGAAACCATTTTCGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

117

Amino Acids

13.62

Weight (kDa)

5.54

Isoelectric Point (pI)

28.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06240
fragaria_vesca FvH4_1g04511 FvH4_1g04521 FvH4_1g05182 FvH4_1g05210 FvH4_1g05230 FvH4_1g05231 FvH4_1g05232 FvH4_1g05391 FvH4_1g05420 FvH4_2g41451 FvH4_3g15810 FvH4_3g15810 FvH4_3g18161 FvH4_3g19801 FvH4_3g39980 FvH4_3g39980 FvH4_3g39980 FvH4_3g39990 FvH4_3g40020 FvH4_3g40020 FvH4_3g40031 FvH4_3g40040 FvH4_4g32891 FvH4_5g33121 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g33140 FvH4_5g38210 FvH4_5g38211 FvH4_5g39231 FvH4_6g16940 FvH4_6g33181 FvH4_7g09411 FvH4_7g23271 FvH4_7g26741 FvH4_7g28012 FvH4_7g28013 FvH4_7g28031 FvH4_7g28041
malus_domestica MD03G1104200.v1.1 MD03G1139900.v1.1 MD03G1192800.v1.1 MD10G1202200.v1.1 MD11G1131100.v1.1 MD11G1202700.v1.1 MD11G1203000.v1.1
prunus_persica Prupe.2G163500_v2.0.a1 Prupe.4G140000_v2.0.a1 Prupe.4G140100_v2.0.a1 Prupe.4G222200_v2.0.a1 Prupe.4G236200_v2.0.a1 Prupe.4G236300_v2.0.a1 Prupe.4G236400_v2.0.a1 Prupe.4G237500_v2.0.a1 Prupe.6G125500_v2.0.a1
pyrus_communis pycom03g14510 pycom05g20120 pycom11g10840 pycom11g17520 pycom11g17590 pycom15g03310
rosa_chinensis RchiOBHm_Chr0c44g0503541 RchiOBHm_Chr2g0090931 RchiOBHm_Chr2g0090941 RchiOBHm_Chr2g0090951 RchiOBHm_Chr2g0090961 RchiOBHm_Chr2g0092791 RchiOBHm_Chr2g0099041 RchiOBHm_Chr2g0169971 RchiOBHm_Chr2g0170021 RchiOBHm_Chr4g0386131 RchiOBHm_Chr4g0386141 RchiOBHm_Chr4g0386161 RchiOBHm_Chr4g0386281 RchiOBHm_Chr4g0386291 RchiOBHm_Chr4g0440811 RchiOBHm_Chr5g0026601 RchiOBHm_Chr5g0026621 RchiOBHm_Chr5g0026871 RchiOBHm_Chr5g0072021 RchiOBHm_Chr5g0072031 RchiOBHm_Chr5g0072171 RchiOBHm_Chr5g0072181 RchiOBHm_Chr7g0231281 RchiOBHm_Chr7g0231301 RchiOBHm_Chr7g0240141
rosa_laevigata RLG00000000695 RLG00000001421 RLG00000004300 RLG00000006148 RLG00000006151 RLG00000016157 RLG00000016158 RLG00000016159 RLG00000016160 RLG00000016161 RLG00000020474 RLG00000021915 RLG00000029159 RLG00000032939 RLG00000032940 RLG00000032966 RLG00000036270 RLG00000036272 RLG00000036280 RLG00000036284
rosa_multiflora Rmu_co8434269.1_g000001 Rmu_sc0000792.1_g000017 Rmu_sc0000792.1_g000018 Rmu_sc0000792.1_g000019 Rmu_sc0001132.1_g000008 Rmu_sc0001152.1_g000004 Rmu_sc0001152.1_g000033 Rmu_sc0001583.1_g000004 Rmu_sc0003305.1_g000001 Rmu_sc0003333.1_g000005 Rmu_sc0003396.1_g000010 Rmu_sc0003396.1_g000011 Rmu_sc0003396.1_g000017 Rmu_sc0004571.1_g000004 Rmu_sc0004851.1_g000003 Rmu_sc0004851.1_g000004 Rmu_sc0005008.1_g000015 Rmu_sc0006854.1_g000016 Rmu_sc0006854.1_g000023 Rmu_sc0009422.1_g000009 Rmu_sc0010610.1_g000003 Rmu_sc0018952.1_g000008 Rmu_sc0037136.1_g000001 Rmu_ssc0000172.1_g000016 Rmu_ssc0000389.1_g000005
rosa_roxburghii Rroxscaffold_1G00009050 Rroxscaffold_1G00009090 Rroxscaffold_1G00009130 Rroxscaffold_1G00009230 Rroxscaffold_1G00044650 Rroxscaffold_1G00052600 Rroxscaffold_1G00052610 Rroxscaffold_1G00052860 Rroxscaffold_1G00052880 Rroxscaffold_2G00081700 Rroxscaffold_2G00148820 Rroxscaffold_2G00150560 Rroxscaffold_2G00150570 Rroxscaffold_2G00150590 Rroxscaffold_2G00150600 Rroxscaffold_2G00150630 Rroxscaffold_2G00150730 Rroxscaffold_2G00150740 Rroxscaffold_3G00229360 Rroxscaffold_3G00262430 Rroxscaffold_4G00313090 Rroxscaffold_5G00381610
rosa_rugosa Rorug01G0285600 Rorug02G0011200 Rorug02G0011300 Rorug02G0011400 Rorug02G0012500 Rorug02G0012600 Rorug02G0012700 Rorug02G0029300 Rorug02G0075800 Rorug02G0075900 Rorug02G0419600 Rorug02G0544800 Rorug04G0112200 Rorug05G0094100 Rorug05G0094100 Rorug05G0094200 Rorug05G0415900 Rorug05G0415900 Rorug05G0416000 Rorug05G0416100 Rorug05G0416200 Rorug05G0416300 Rorug05G0416700 Rorug05G0416800 Rorug07G0265700 Rorug07G0265800 Rorug07G0265900 Rorug07G0266000 Rorug07G0266100
rosa_samantha Rh2AG057300 Rh2AG057400 Rh2AG058700 Rh2AG478800 Rh2AG616800 Rh2DG056700 Rh2DG056800 Rh2DG056900 Rh2DG073500 Rh2DG129700 Rh2DG639800 Rh4AG380100 Rh4DG386700 Rh5AG187500 Rh5AG187700 Rh5AG189200 Rh5AG472100 Rh5AG472800 Rh5BG184000 Rh5BG184200 Rh5BG185800 Rh5BG186500 Rh5CG204000 Rh5CG205800 Rh5DG186300 Rh5DG186500 Rh5DG188100 Rh5DG503500 Rh5DG503700 Rh5DG504000 Rh5DG504100 Rh5DG504700 Rh5DG504900 Rh5DG505000 Rh7AG419500 Rh7AG419800 Rh7CG439300 Rh7DG413100
rosa_wichuraiana Rw0G002880 Rw1G026240 Rw2G005200 Rw2G005210 Rw2G005820 Rw2G009640 Rw5G016980 Rw5G017000 Rw5G017190 Rw5G043880 Rw7G011300 Rw7G034680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 280
AccII CGCG 1 cut(s) 138
AclWI GGATC 2 cut(s) 61, 324
AcsI RAATTY 1 cut(s) 117
AcyI GRCGYC 1 cut(s) 281
AfaI GTAC 1 cut(s) 98
AgsI TTSAA 2 cut(s) 270, 338
AlwI GGATC 2 cut(s) 61, 324
AoxI GGCC 1 cut(s) 296
ApeKI GCWGC 1 cut(s) 239
ApoI RAATTY 1 cut(s) 117
AspLEI GCGC 1 cut(s) 283
AspS9I GGNCC 1 cut(s) 297
BaeGI GKGCMC 1 cut(s) 328
BaeI ACNNNNGTAYC 2 cut(s) 157, 190
BanI GGYRCC 1 cut(s) 280
BbvI GCAGC 1 cut(s) 251
BccI CCATC 1 cut(s) 61
BclI TGATCA 1 cut(s) 205
BfaI CTAG 1 cut(s) 147
BfoI RGCGCY 1 cut(s) 284
BglII AGATCT 1 cut(s) 6
BisI GCNGC 1 cut(s) 240
BlsI GCNGC 1 cut(s) 241
BmgT120I GGNCC 1 cut(s) 297
BmiI GGNNCC 2 cut(s) 282, 299
BsaBI GATNNNNATC 1 cut(s) 210
BsaHI GRCGYC 1 cut(s) 281
Bse1I ACTGG 1 cut(s) 175
Bse8I GATNNNNATC 1 cut(s) 210
BseJI GATNNNNATC 1 cut(s) 210
BseNI ACTGG 1 cut(s) 175
BseSI GKGCMC 1 cut(s) 328
BseXI GCAGC 1 cut(s) 251
Bsh1236I CGCG 1 cut(s) 138
BshFI GGCC 1 cut(s) 298
BshNI GGYRCC 1 cut(s) 280
BsnI GGCC 1 cut(s) 298
Bsp1286I GDGCHC 1 cut(s) 328
Bsp1407I TGTACA 1 cut(s) 96
Bsp143I GATC 7 cut(s) 6, 53, 80, 205, 211, 285, 316
Bsp68I TCGCGA 1 cut(s) 138
BspANI GGCC 1 cut(s) 298
BspFNI CGCG 1 cut(s) 138
BspHI TCATGA 1 cut(s) 214
BspLI GGNNCC 2 cut(s) 282, 299
BspPI GGATC 2 cut(s) 61, 324
BspT107I GGYRCC 1 cut(s) 280
BsrGI TGTACA 1 cut(s) 96
BsrI ACTGG 1 cut(s) 175
BssMI GATC 7 cut(s) 6, 53, 80, 205, 211, 285, 316
BssNI GRCGYC 1 cut(s) 281
BstACI GRCGYC 1 cut(s) 281
BstAUI TGTACA 1 cut(s) 96
BstFNI CGCG 1 cut(s) 138
BstH2I RGCGCY 1 cut(s) 284
BstHHI GCGC 1 cut(s) 283
BstKTI GATC 7 cut(s) 9, 56, 83, 208, 214, 288, 319
BstMBI GATC 7 cut(s) 6, 53, 80, 205, 211, 285, 316
BstMWI GCNNNNNNNGC 1 cut(s) 248
BstSLI GKGCMC 1 cut(s) 328
BstUI CGCG 1 cut(s) 138
BstV1I GCAGC 1 cut(s) 251
BstX2I RGATCY 2 cut(s) 6, 53
BstYI RGATCY 2 cut(s) 6, 53
BsuRI GGCC 1 cut(s) 298
BtsIMutI CAGTG 2 cut(s) 168, 326
BtuMI TCGCGA 1 cut(s) 138
CciI TCATGA 1 cut(s) 214
CfoI GCGC 1 cut(s) 283
Cfr13I GGNCC 1 cut(s) 297
Csp6I GTAC 1 cut(s) 97
CviAII CATG 1 cut(s) 215
CviJI RGCY 3 cut(s) 189, 242, 298
CviKI_1 RGCY 3 cut(s) 189, 242, 298
CviQI GTAC 1 cut(s) 97
DinI GGCGCC 1 cut(s) 282
DpnI GATC 7 cut(s) 8, 55, 82, 207, 213, 287, 318
DpnII GATC 7 cut(s) 6, 53, 80, 205, 211, 285, 316
EcoO109I RGGNCCY 1 cut(s) 297
EgeI GGCGCC 1 cut(s) 282
EheI GGCGCC 1 cut(s) 282
FaeI CATG 1 cut(s) 218
FaiI YATR 4 cut(s) 19, 60, 180, 216
FatI CATG 1 cut(s) 214
FbaI TGATCA 1 cut(s) 205
Fnu4HI GCNGC 1 cut(s) 240
Fsp4HI GCNGC 1 cut(s) 240
FspBI CTAG 1 cut(s) 147
GlaI GCGC 1 cut(s) 282
GluI GCNGC 1 cut(s) 240
HaeII RGCGCY 1 cut(s) 284
HaeIII GGCC 1 cut(s) 298
HhaI GCGC 1 cut(s) 283
Hin1I GRCGYC 1 cut(s) 281
Hin1II CATG 1 cut(s) 218
Hin6I GCGC 1 cut(s) 281
HinP1I GCGC 1 cut(s) 281
Hpy188III TCNNGA 4 cut(s) 137, 209, 215, 274
HpyAV CCTTC 1 cut(s) 271
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 248
Hsp92I GRCGYC 1 cut(s) 281
Hsp92II CATG 1 cut(s) 218
HspAI GCGC 1 cut(s) 281
KasI GGCGCC 1 cut(s) 280
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 7 cut(s) 6, 53, 80, 205, 211, 285, 316
LpnPI CCDG 3 cut(s) 24, 156, 259
Lsp1109I GCAGC 1 cut(s) 251
MaeI CTAG 1 cut(s) 147
MaeIII GTNAC 1 cut(s) 164
MalI GATC 7 cut(s) 8, 55, 82, 207, 213, 287, 318
MboI GATC 7 cut(s) 6, 53, 80, 205, 211, 285, 316
MflI RGATCY 2 cut(s) 6, 53
MhlI GDGCHC 1 cut(s) 328
MluCI AATT 3 cut(s) 100, 117, 132
Mly113I GGCGCC 1 cut(s) 281
MnlI CCTC 1 cut(s) 44
MvnI CGCG 1 cut(s) 138
MwoI GCNNNNNNNGC 1 cut(s) 248
NarI GGCGCC 1 cut(s) 281
NdeII GATC 7 cut(s) 6, 53, 80, 205, 211, 285, 316
NlaIII CATG 1 cut(s) 218
NlaIV GGNNCC 2 cut(s) 282, 299
NruI TCGCGA 1 cut(s) 138
PagI TCATGA 1 cut(s) 214
PkrI GCNGC 1 cut(s) 241
PluTI GGCGCC 1 cut(s) 284
PspN4I GGNNCC 2 cut(s) 282, 299
PspPI GGNCC 1 cut(s) 297
PsuI RGATCY 2 cut(s) 6, 53
RruI TCGCGA 1 cut(s) 138
RsaI GTAC 1 cut(s) 98
RsaNI GTAC 1 cut(s) 97
SatI GCNGC 1 cut(s) 240
Sau3AI GATC 7 cut(s) 6, 53, 80, 205, 211, 285, 316
Sau96I GGNCC 1 cut(s) 297
SduI GDGCHC 1 cut(s) 328
SetI ASST 1 cut(s) 248
SfoI GGCGCC 1 cut(s) 282
Sse9I AATT 3 cut(s) 100, 117, 132
SspDI GGCGCC 1 cut(s) 280
SspMI CTAG 1 cut(s) 147
TaqI TCGA 2 cut(s) 257, 348
TasI AATT 3 cut(s) 100, 117, 132
TatI WGTACW 1 cut(s) 96
TscAI CASTG 2 cut(s) 175, 326
TseI GCWGC 1 cut(s) 239
TspRI CASTG 2 cut(s) 175, 326
XapI RAATTY 1 cut(s) 117
XspI CTAG 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.