FvH4_3g24040

wall-associated receptor kinase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000052
Physical Location & Seq
Reverse (-)
17087775 .. 17091022
3248 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g24040.t1

Sequence Viewer

Length: 2160 bp
ATGCCGGGAGGCGCCACCACAAGAGTCTCCACAAGAAGATGTGGCACTCACCACCAAGAAGATGTGGCCAGAGTCTCGGTTTTTGCCTCTGATATGGGAATCAGTGTGATGATGAGTAGTGCAATACTAGCTGCAGCACAAAGACATAAGCCATCCATAGCAAGGCCACATTGCCAACCGGAGTGTGGAGGGATTGAAATCCCATACCCTTTTGGAATGGGAACCTCAGATGATTGTTACCTCAGTGACTCGTTCCAAATATATTGTGACAACTCGACAGATCCTCCAAAACCTTTTCTATACCTGTCTAATAGTAAGCGGGAGGTGCTGGAGATATCTCTTGCAGGCACACTCAAGGTCATGAACCCTATTTCCTTCTTCAATTGCAGTGACAAGGAATTTACCACCCTTCAGCCGGCTAGCTTGGTGGGAACCTCATATGTGTATTCACAGAGGAATAGATTCACTTCGATGAGTTGTGGAGCGATTGCCTACATGATGTCATGGGAATCGGAGTCGATAATCAGTGGCTGCTTGTCCATTTGTGATCCTAGTGCTGGCAGGAGAAGTTTACTAAATAACAGTTGCACTGGTATTCATTGCTGCCAGACCACCATTCCTGCAGCTGTTCAAGACTTCTACACTGATTTTAGAGGCGTAGAACTTGCCGCGGAGAAAGATATGTGCAAGTTTGCGTTCCTAGTAGACCAAGATTGGTTTACATCAGATTCAACTAATATTTCTGCCATTAACGATGAGATGGACTCTGTCCCTATAGTGCTAGACTGGGACTTGTCTAATTACACCATTGCTGATATAGTGGGAACAGAAGTATGGTGGGGGAGTGATTATTTCAATAGAACAGCTTGGACTGGCAGCCAGTGCTATTGCTTAGAGGGCTTTCGTGGGAATCCATATCTTATTGATGGTTGTCAAGACATTAACGAGTGTAGAGAGTATCCAAACATATGTGGTCGCTTTGATTGTTTCAATTTTCCCGGGGGATTTTTTTGTAATGATAGGCCTGCACCACCGCAGTCACGGTTTCATGTGGCTATTATAGGTACTGTTGTCCTTGCAATACTGATTATACACACTTGTGCATGGTGGTTGCAAAGAGCTCTAAAGAAAAGGAAGATTATCAAACGCAAGCAGAAGTTCTTTAAACAGAATGGTGGTTTATTATTGGAGCAACAATTATCATCTGGTGAAGTTAATGTTGAGAAAATCAAACTGTTCAACTCAAAGGAGTTGGAGAAAGCCACTGATCATTTTAATGTAGACAGAGTTCTTGGACAAGGAGGTCAAGGAACTGTTTATAAAGGAATGCTAGCAGATGGAAAGATTGTAGCAGTAAAGAAGTCAGTAATAGCTAATGGAGGAGAAGTGAGACAATTCATTAACGAAATTGTTGTTCTTTCACAGATCATTCACAGGAATGTGGTGAAATTATTGGGGTGTTGTTTGGAAACTGAGGTTCCACTTTTGGTTTATGAATTCATACCCAATGGAACACTTTATCAGTATATTCAACATCAGAATGAAGAGTTTCCTTTGACATGGAAAATGCGCTTACGCGTTGCCATTGAAGTTGCAGGAGCTCTTTTCTATTTGCACTCAGCAGCTTCTACTCCGATTTACCACCGAGACATCAAATCTTCTAACATACTCTTAGATGATAAATATAGAGTCAAAGTAGCAGACTTTGGAACATCAAGATCTGTTTCAATTGAGAAAACACACCTTACTATGTCACAAGTTCAAGGAACATTCGGTTATTTGGACCCCGAGTACTTCCGTACCAACCAATTCACAGACAAGAGTGATGTTTATAGCTTCGGGGTTGTCCTTGCTGAACTCTTAACAGGAGAAAAACCAATAATGAAATGGAAGTCGGAAGAAGCCACAAGCCTTGCCAACTATTTCCTTGTTTCTTTGGAGGATGATCACTTATTTGATATTCTTGATGCTCGACTTGTTAAAGATGGTGGGAAAGAAGTCATCACTGAAGTTGCTTACCTTGCAAAACGTTGCTTGAATTTGAAGGGAAAGAAGCGTCCAACTATGAAAGAAGTAGCCATGGAGTTGGAGAGGATAGTTAATTTATATGTGAATAACTCTGATGTTCAATCAAACTCAATAGATGTTGGATATGACTAG

Protein Analysis

720

Amino Acids

80.66

Weight (kDa)

5.87

Isoelectric Point (pI)

38.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 58 - 120 1.6e-11 Wall-associated receptor kinase galacturonan-binding
Pkinase PF00069 425 - 692 3.2e-47 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 427 - 696 1.6e-47 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000052)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16090 AT1G16110 AT1G16120 AT1G16130 AT1G16150 AT1G16160 AT1G16260 AT1G16260 AT1G16260 AT1G79670 AT1G79670
fragaria_vesca FvH4_1g22960 FvH4_3g09860 FvH4_3g10284 FvH4_3g10284 FvH4_3g10540 FvH4_3g24040 FvH4_3g35290 FvH4_3g35290 FvH4_5g06860 FvH4_5g06940 FvH4_6g15920 FvH4_6g15920 FvH4_6g37660 FvH4_6g37670 FvH4_6g37691 FvH4_6g37700 FvH4_6g37710 FvH4_6g38990 FvH4_6g39000 FvH4_6g39020 FvH4_6g39020 FvH4_6g39020 FvH4_6g39021 FvH4_6g39030 FvH4_6g39030 FvH4_6g39031 FvH4_6g39032 FvH4_6g45200 FvH4_6g45200
malus_domestica MD08G1107900.v1.1 MD09G1145100.v1.1 MD09G1145200.v1.1 MD09G1145300.v1.1 MD09G1145400.v1.1 MD09G1145500.v1.1 MD17G1131600.v1.1 MD17G1131700.v1.1 MD17G1131900.v1.1 MD17G1132000.v1.1
prunus_persica Prupe.1G188400_v2.0.a1 Prupe.1G188700_v2.0.a1 Prupe.3G180500_v2.0.a1 Prupe.3G180600_v2.0.a1 Prupe.3G180700_v2.0.a1 Prupe.3G181000_v2.0.a1 Prupe.3G181100_v2.0.a1 Prupe.3G181100_v2.0.a1 Prupe.3G181200_v2.0.a1 Prupe.3G181200_v2.0.a1 Prupe.3G181400_v2.0.a1 Prupe.3G181500_v2.0.a1 Prupe.3G181600_v2.0.a1 Prupe.3G181800_v2.0.a1 Prupe.3G181900_v2.0.a1 Prupe.3G182000_v2.0.a1 Prupe.3G182100_v2.0.a1 Prupe.3G182200_v2.0.a1 Prupe.3G182300_v2.0.a1 Prupe.3G182400_v2.0.a1 Prupe.3G182500_v2.0.a1 Prupe.3G182600_v2.0.a1 Prupe.3G182700_v2.0.a1 Prupe.5G051200_v2.0.a1 Prupe.5G051300_v2.0.a1 Prupe.5G051400_v2.0.a1 Prupe.5G051500_v2.0.a1 Prupe.5G051600_v2.0.a1 Prupe.5G051600_v2.0.a1 Prupe.5G051800_v2.0.a1
pyrus_communis pycom09g06470 pycom09g06490 pycom09g06510 pycom09g06520 pycom09g06570 pycom09g06580 pycom17g12440 pycom17g12450 pycom17g12530
rosa_chinensis RchiOBHm_Chr2g0117481 RchiOBHm_Chr2g0128321 RchiOBHm_Chr2g0128331 RchiOBHm_Chr2g0128581 RchiOBHm_Chr2g0128591 RchiOBHm_Chr2g0150651 RchiOBHm_Chr2g0150661 RchiOBHm_Chr2g0150741 RchiOBHm_Chr2g0150781 RchiOBHm_Chr2g0152581 RchiOBHm_Chr2g0152591 RchiOBHm_Chr2g0152641 RchiOBHm_Chr2g0152661 RchiOBHm_Chr2g0152711 RchiOBHm_Chr2g0152731 RchiOBHm_Chr2g0152871 RchiOBHm_Chr2g0152881 RchiOBHm_Chr2g0152901 RchiOBHm_Chr2g0152921 RchiOBHm_Chr2g0152931 RchiOBHm_Chr2g0152941 RchiOBHm_Chr3g0469621 RchiOBHm_Chr3g0469631 RchiOBHm_Chr5g0015591 RchiOBHm_Chr5g0046061 RchiOBHm_Chr5g0047341 RchiOBHm_Chr5g0063341 RchiOBHm_Chr5g0063351 RchiOBHm_Chr6g0264381 RchiOBHm_Chr7g0191741 RchiOBHm_Chr7g0210751 RchiOBHm_Chr7g0221871 RchiOBHm_Chr7g0225671 RchiOBHm_Chr7g0225891 RchiOBHm_Chr7g0225901 RchiOBHm_Chr7g0225961 RchiOBHm_Chr7g0225971 RchiOBHm_Chr7g0234031 RchiOBHm_Chr7g0234041
rosa_laevigata RLG00000001780 RLG00000001784 RLG00000001785 RLG00000001788 RLG00000001789 RLG00000001793 RLG00000001794 RLG00000002941 RLG00000004430 RLG00000014259 RLG00000018349 RLG00000019001 RLG00000019005 RLG00000019011 RLG00000020503 RLG00000020507 RLG00000020648 RLG00000020649 RLG00000020651 RLG00000020652 RLG00000020653 RLG00000020655 RLG00000020656 RLG00000020657 RLG00000023668 RLG00000024331 RLG00000034386 RLG00000035624 RLG00000035625
rosa_multiflora Rmu_co8401977.1_g000001 Rmu_co8409989.1_g000001 Rmu_co8432067.1_g000001 Rmu_co8491011.1_g000001 Rmu_sc0000580.1_g000085 Rmu_sc0000740.1_g000012 Rmu_sc0000740.1_g000014 Rmu_sc0000837.1_g000041 Rmu_sc0000837.1_g000077 Rmu_sc0001552.1_g000008 Rmu_sc0001617.1_g000001 Rmu_sc0002082.1_g000006 Rmu_sc0002082.1_g000007 Rmu_sc0002082.1_g000022 Rmu_sc0002989.1_g000013 Rmu_sc0003064.1_g000011 Rmu_sc0003127.1_g000003 Rmu_sc0003127.1_g000014 Rmu_sc0003127.1_g000028 Rmu_sc0003127.1_g000032 Rmu_sc0003127.1_g000034 Rmu_sc0003127.1_g000035 Rmu_sc0003127.1_g000054 Rmu_sc0003127.1_g000055 Rmu_sc0003465.1_g000034 Rmu_sc0005223.1_g000021 Rmu_sc0005302.1_g000004 Rmu_sc0005378.1_g000005 Rmu_sc0005378.1_g000007 Rmu_sc0005378.1_g000017 Rmu_sc0005378.1_g000034 Rmu_sc0005378.1_g000039 Rmu_sc0005378.1_g000042 Rmu_sc0005378.1_g000056 Rmu_sc0005378.1_g000057 Rmu_sc0005378.1_g000058 Rmu_sc0006483.1_g000013 Rmu_sc0008775.1_g000006 Rmu_sc0008775.1_g000011 Rmu_sc0009104.1_g000010 Rmu_sc0009104.1_g000011 Rmu_sc0009104.1_g000020 Rmu_sc0010960.1_g000006 Rmu_sc0011737.1_g000002 Rmu_sc0011737.1_g000004 Rmu_sc0012875.1_g000003 Rmu_sc0013122.1_g000002 Rmu_sc0018944.1_g000002 Rmu_sc0020155.1_g000001 Rmu_sc0020156.1_g000001 Rmu_ssc0000233.1_g000012 Rmu_ssc0000233.1_g000013 Rmu_ssc0000233.1_g000030 Rmu_ssc0000233.1_g000044 Rmu_ssc0000233.1_g000047 Rmu_ssc0000233.1_g000052 Rmu_ssc0000233.1_g000054 Rmu_ssc0000233.1_g000055 Rmu_ssc0000233.1_g000080 Rmu_ssc0000233.1_g000082 Rmu_ssc0000233.1_g000087 Rmu_ssc0000233.1_g000094 Rmu_ssc0000480.1_g000060 Rmu_ssc0000480.1_g000061
rosa_roxburghii Rroxscaffold_1G00017360 Rroxscaffold_1G00017370 Rroxscaffold_1G00060880 Rroxscaffold_2G00095370 Rroxscaffold_2G00095420 Rroxscaffold_2G00095450 Rroxscaffold_2G00095460 Rroxscaffold_2G00095490 Rroxscaffold_2G00095560 Rroxscaffold_2G00095570 Rroxscaffold_2G00096960 Rroxscaffold_2G00097010 Rroxscaffold_2G00126500 Rroxscaffold_3G00233390 Rroxscaffold_3G00233580 Rroxscaffold_3G00263590 Rroxscaffold_6G00411660
rosa_rugosa Rorug01G0142700.1 Rorug01G0148600.1 Rorug02G0212800 Rorug02G0422400 Rorug02G0434700 Rorug02G0434800 Rorug02G0435000 Rorug02G0435200 Rorug02G0435300 Rorug02G0435400 Rorug02G0435700 Rorug02G0435800 Rorug02G0436200 Rorug02G0436300 Rorug03G0102800 Rorug04G0123600 Rorug04G0123700 Rorug04G0123800 Rorug04G0124000 Rorug04G0124000 Rorug04G0124500 Rorug04G0124700 Rorug04G0124900 Rorug05G0028600.1 Rorug05G0356100 Rorug05G0356800 Rorug06G0011900 Rorug07G0092900 Rorug07G0122800 Rorug07G0232500 Rorug07G0232600 Rorug07G0232700
rosa_samantha Rh1AG408900 Rh2AG332700 Rh2AG333400 Rh2AG482100 Rh2AG482200 Rh2AG482500 Rh2AG496000 Rh2AG496100 Rh2AG496200 Rh2AG496300 Rh2AG497100 Rh2AG497200 Rh2AG497400 Rh2BG280300 Rh2BG340500 Rh2BG494400 Rh2BG494900 Rh2BG507800 Rh2BG507900 Rh2BG508000 Rh2BG508100 Rh2BG508300 Rh2BG508500 Rh2BG508700 Rh2BG509200 Rh2BG512700 Rh2CG271900 Rh2CG319100 Rh2CG319400 Rh2CG357200 Rh2CG468400 Rh2CG468500 Rh2CG468800 Rh2CG482200 Rh2CG482300 Rh2CG482400 Rh2CG482500 Rh2CG483200 Rh2CG483300 Rh2CG483500 Rh2CG483600 Rh2DG294600 Rh2DG357100 Rh2DG357700 Rh2DG503400 Rh2DG504300 Rh2DG504900 Rh2DG505500 Rh2DG505900 Rh2DG519000 Rh2DG519100 Rh2DG519300 Rh2DG519400 Rh2DG520000 Rh2DG520200 Rh2DG520500 Rh2DG521000 Rh2DG524300 Rh3AG152400 Rh3AG334400 Rh3BG176100 Rh3CG167200 Rh3DG199400 Rh3DG199500 Rh5AG415900 Rh5BG430800 Rh5CG454300 Rh5DG444600 Rh6AG247500 Rh6AG247700 Rh7AG120600 Rh7AG369800 Rh7AG370800 Rh7AG468300 Rh7BG366400 Rh7CG125200 Rh7CG388700 Rh7CG389400 Rh7CG459600 Rh7DG123300 Rh7DG123400 Rh7DG123800 Rh7DG123900 Rh7DG377200
rosa_wichuraiana Rw0G004850 Rw0G004870 Rw0G013120 Rw1G013520 Rw2G026850 Rw2G026910 Rw2G027120 Rw2G039340 Rw2G039360 Rw2G039410 Rw2G039420 Rw2G039440 Rw2G039520 Rw2G040810 Rw2G040830 Rw2G040850 Rw2G040860 Rw2G040880 Rw2G041210 Rw2G041220 Rw2G041240 Rw2G041250 Rw3G014370 Rw5G010520 Rw5G039070 Rw6G021410 Rw6G021420 Rw7G010280 Rw7G021780 Rw7G031820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1320
AasI GACNNNNNNGTC 1 cut(s) 1302
AccB1I GGYRCC 1 cut(s) 11
AccI GTMKAC 2 cut(s) 705, 1281
AccII CGCG 2 cut(s) 671, 1578
AciI CCGC 4 cut(s) 319, 669, 671, 1034
AclI AACGTT 1 cut(s) 2029
AclWI GGATC 2 cut(s) 275, 542
AcoI YGGCCR 1 cut(s) 66
AcsI RAATTY 3 cut(s) 398, 1496, 2038
AcuI CTGAAG 2 cut(s) 395, 2028
AcyI GRCGYC 1 cut(s) 12
AfaI GTAC 3 cut(s) 1066, 1793, 1801
AfiI CCNNNNNNNGG 4 cut(s) 162, 185, 415, 557
AflIII ACRYGT 1 cut(s) 1576
AleI CACNNNNGTG 1 cut(s) 1098
AloI GAACNNNNNNTCC 2 cut(s) 356, 388
AluBI AGCT 9 cut(s) 131, 423, 626, 866, 1121, 1373, 1601, 1625, 1836
AluI AGCT 9 cut(s) 131, 423, 626, 866, 1121, 1373, 1601, 1625, 1836
Alw21I GWGCWC 2 cut(s) 1123, 1603
Alw26I GTCTC 4 cut(s) 31, 79, 1384, 1641
AlwI GGATC 2 cut(s) 275, 542
AlwNI CAGNNNCTG 1 cut(s) 531
Ama87I CYCGRG 2 cut(s) 998, 1787
AoxI GGCC 3 cut(s) 66, 164, 1022
ApeKI GCWGC 7 cut(s) 131, 134, 531, 603, 623, 876, 1622
ApoI RAATTY 3 cut(s) 398, 1496, 2038
Asp700I GAANNNNTTC 2 cut(s) 461, 1548
AspLEI GCGC 2 cut(s) 14, 1572
AspS9I GGNCC 1 cut(s) 1783
AsuC2I CCSGG 3 cut(s) 6, 999, 1000
AsuHPI GGTGA 3 cut(s) 41, 1220, 1456
AsuNHI GCTAGC 2 cut(s) 419, 1330
AvaI CYCGRG 2 cut(s) 998, 1787
AvaII GGWCC 1 cut(s) 1783
BaeI ACNNNNGTAYC 4 cut(s) 1056, 1089, 1783, 1816
BalI TGGCCA 1 cut(s) 68
BanI GGYRCC 1 cut(s) 11
BanII GRGCYC 2 cut(s) 1123, 1603
Bbv12I GWGCWC 2 cut(s) 1123, 1603
BbvI GCAGC 7 cut(s) 118, 146, 518, 590, 635, 888, 1634
BccI CCATC 5 cut(s) 160, 754, 920, 1331, 1979
BciVI GTATCC 1 cut(s) 969
BclI TGATCA 2 cut(s) 1267, 1945
BcnI CCSGG 3 cut(s) 6, 999, 1000
BcoDI GTCTC 4 cut(s) 31, 79, 1384, 1641
BfaI CTAG 7 cut(s) 128, 420, 552, 701, 782, 1331, 2158
BfmI CTRYAG 3 cut(s) 132, 621, 774
BfoI RGCGCY 1 cut(s) 15
BfuI GTATCC 1 cut(s) 969
BglII AGATCT 1 cut(s) 1718
BisI GCNGC 8 cut(s) 132, 135, 532, 604, 624, 669, 877, 1623
BlsI GCNGC 8 cut(s) 133, 136, 533, 605, 625, 670, 878, 1624
BmcAI AGTACT 1 cut(s) 1793
Bme1390I CCNGG 3 cut(s) 6, 999, 1000
Bme18I GGWCC 1 cut(s) 1783
BmeT110I CYCGRG 2 cut(s) 998, 1787
BmgT120I GGNCC 1 cut(s) 1783
BmiI GGNNCC 5 cut(s) 13, 223, 433, 1479, 1785
BmrFI CCNGG 3 cut(s) 6, 999, 1000
BmrI ACTGGG 1 cut(s) 796
BmsI GCATC 1 cut(s) 1957
BmtI GCTAGC 2 cut(s) 423, 1334
BmuI ACTGGG 1 cut(s) 796
BplI GAGNNNNNCTC 2 cut(s) 749, 781
BpmI CTGGAG 1 cut(s) 350
BpuEI CTTGAG 1 cut(s) 338
BpuMI CCSGG 3 cut(s) 6, 999, 1000
BsaBI GATNNNNATC 1 cut(s) 197
BsaHI GRCGYC 1 cut(s) 12
BsaJI CCNNGG 4 cut(s) 669, 998, 999, 2079
BsaWI WCCGGW 1 cut(s) 178
BsaXI ACNNNNNCTCC 4 cut(s) 268, 298, 1371, 1401
Bsc4I CCNNNNNNNGG 4 cut(s) 162, 185, 415, 557
Bse118I RCCGGY 1 cut(s) 415
Bse1I ACTGG 4 cut(s) 595, 791, 877, 880
Bse3DI GCAATG 3 cut(s) 169, 598, 807
Bse8I GATNNNNATC 1 cut(s) 197
BseDI CCNNGG 4 cut(s) 669, 998, 999, 2079
BseGI GGATG 2 cut(s) 152, 1948
BseJI GATNNNNATC 1 cut(s) 197
BseLI CCNNNNNNNGG 4 cut(s) 162, 185, 415, 557
BseMI GCAATG 3 cut(s) 169, 598, 807
BseMII CTCAG 4 cut(s) 240, 256, 1464, 1632
BseNI ACTGG 4 cut(s) 595, 791, 877, 880
BseRI GAGGAG 1 cut(s) 1395
BseXI GCAGC 7 cut(s) 118, 146, 518, 590, 635, 888, 1634
BsgI GTGCAG 1 cut(s) 1011
Bsh1236I CGCG 2 cut(s) 671, 1578
BshFI GGCC 3 cut(s) 68, 166, 1024
BshNI GGYRCC 1 cut(s) 11
BsiHKAI GWGCWC 2 cut(s) 1123, 1603
BsiHKCI CYCGRG 2 cut(s) 998, 1787
BsiSI CCGG 4 cut(s) 5, 179, 416, 999
BslFI GGGAC 2 cut(s) 755, 803
BslI CCNNNNNNNGG 4 cut(s) 162, 185, 415, 557
BsmAI GTCTC 4 cut(s) 31, 79, 1384, 1641
BsmFI GGGAC 2 cut(s) 755, 803
BsmI GAATGC 1 cut(s) 1332
BsnI GGCC 3 cut(s) 68, 166, 1024
BsoBI CYCGRG 2 cut(s) 998, 1787
Bsp1286I GDGCHC 2 cut(s) 1123, 1603
Bsp143I GATC 6 cut(s) 280, 547, 1267, 1425, 1718, 1945
Bsp19I CCATGG 1 cut(s) 2079
BspACI CCGC 4 cut(s) 319, 669, 671, 1034
BspANI GGCC 3 cut(s) 68, 166, 1024
BspCNI CTCAG 4 cut(s) 239, 255, 1465, 1631
BspFNI CGCG 2 cut(s) 671, 1578
BspHI TCATGA 1 cut(s) 360
BspLI GGNNCC 5 cut(s) 13, 223, 433, 1479, 1785
BspMAI CTGCAG 2 cut(s) 136, 625
BspOI GCTAGC 2 cut(s) 423, 1334
BspPI GGATC 2 cut(s) 275, 542
BspT107I GGYRCC 1 cut(s) 11
BsrDI GCAATG 3 cut(s) 169, 598, 807
BsrFI RCCGGY 1 cut(s) 415
BsrI ACTGG 4 cut(s) 595, 791, 877, 880
BssAI RCCGGY 1 cut(s) 415
BssECI CCNNGG 4 cut(s) 669, 998, 999, 2079
BssMI GATC 6 cut(s) 280, 547, 1267, 1425, 1718, 1945
BssNI GRCGYC 1 cut(s) 12
BssT1I CCWWGG 1 cut(s) 2079
Bst4CI ACNGT 5 cut(s) 584, 1044, 1069, 1236, 1315
Bst6I CTCTTC 1 cut(s) 1539
BstACI GRCGYC 1 cut(s) 12
BstAPI GCANNNNNTGC 1 cut(s) 882
BstC8I GCNNGC 7 cut(s) 346, 417, 421, 559, 1026, 1151, 1332
BstDEI CTNAG 6 cut(s) 226, 242, 892, 1473, 1618, 1672
BstDSI CCRYGG 2 cut(s) 669, 2079
BstF5I GGATG 2 cut(s) 152, 1948
BstFNI CGCG 2 cut(s) 671, 1578
BstH2I RGCGCY 1 cut(s) 15
BstHHI GCGC 2 cut(s) 14, 1572
BstKTI GATC 6 cut(s) 283, 550, 1270, 1428, 1721, 1948
BstMAI GTCTC 4 cut(s) 31, 79, 1384, 1641
BstMBI GATC 6 cut(s) 280, 547, 1267, 1425, 1718, 1945
BstMWI GCNNNNNNNGC 5 cut(s) 128, 325, 882, 897, 2021
BstSCI CCNGG 3 cut(s) 4, 997, 998
BstSFI CTRYAG 3 cut(s) 132, 621, 774
BstUI CGCG 2 cut(s) 671, 1578
BstV1I GCAGC 7 cut(s) 118, 146, 518, 590, 635, 888, 1634
BstX2I RGATCY 2 cut(s) 280, 1718
BstXI CCANNNNNNTGG 1 cut(s) 2086
BstYI RGATCY 2 cut(s) 280, 1718
BsuI GTATCC 1 cut(s) 969
BsuRI GGCC 3 cut(s) 68, 166, 1024
BtgI CCRYGG 2 cut(s) 669, 2079
BtsCI GGATG 2 cut(s) 152, 1948
BtsI GCAGTG 1 cut(s) 394
BtsIMutI CAGTG 9 cut(s) 109, 250, 394, 532, 588, 642, 887, 1263, 2004
Cac8I GCNNGC 7 cut(s) 346, 417, 421, 559, 1026, 1151, 1332
CaiI CAGNNNCTG 1 cut(s) 531
CciI TCATGA 1 cut(s) 360
CfoI GCGC 2 cut(s) 14, 1572
Cfr10I RCCGGY 1 cut(s) 415
Cfr13I GGNCC 1 cut(s) 1783
Cfr42I CCGCGG 1 cut(s) 672
Cfr9I CCCGGG 1 cut(s) 998
CseI GACGC 1 cut(s) 2045
Csp6I GTAC 3 cut(s) 1065, 1792, 1800
CspCI CAANNNNNGTGG 2 cut(s) 1894, 1929
CviAII CATG 7 cut(s) 361, 496, 504, 1049, 1104, 1560, 2080
CviQI GTAC 3 cut(s) 1065, 1792, 1800
DdeI CTNAG 6 cut(s) 226, 242, 892, 1473, 1618, 1672
DinI GGCGCC 1 cut(s) 13
DpnI GATC 6 cut(s) 282, 549, 1269, 1427, 1720, 1947
DpnII GATC 6 cut(s) 280, 547, 1267, 1425, 1718, 1945
DraI TTTAAA 1 cut(s) 1165
DrdI GACNNNNNNGTC 1 cut(s) 1302
DseDI GACNNNNNNGTC 1 cut(s) 1302
EaeI YGGCCR 1 cut(s) 66
Eam1104I CTCTTC 1 cut(s) 1539
EarI CTCTTC 1 cut(s) 1539
Ecl136II GAGCTC 2 cut(s) 1121, 1601
Eco130I CCWWGG 1 cut(s) 2079
Eco147I AGGCCT 1 cut(s) 1024
Eco24I GRGCYC 2 cut(s) 1123, 1603
Eco32I GATATC 1 cut(s) 336
Eco47I GGWCC 1 cut(s) 1783
Eco53kI GAGCTC 2 cut(s) 1121, 1601
Eco57I CTGAAG 2 cut(s) 395, 2028
Eco88I CYCGRG 2 cut(s) 998, 1787
EcoICRI GAGCTC 2 cut(s) 1121, 1601
EcoRI GAATTC 1 cut(s) 1496
EcoRV GATATC 1 cut(s) 336
EcoT14I CCWWGG 1 cut(s) 2079
EcoT38I GRGCYC 2 cut(s) 1123, 1603
EgeI GGCGCC 1 cut(s) 13
EheI GGCGCC 1 cut(s) 13
ErhI CCWWGG 1 cut(s) 2079
FaeI CATG 7 cut(s) 364, 499, 507, 1052, 1107, 1563, 2083
FaqI GGGAC 2 cut(s) 755, 803
FatI CATG 7 cut(s) 360, 495, 503, 1048, 1103, 1559, 2079
FauI CCCGC 1 cut(s) 312
FauNDI CATATG 2 cut(s) 439, 968
FbaI TGATCA 2 cut(s) 1267, 1945
FblI GTMKAC 2 cut(s) 705, 1281
Fnu4HI GCNGC 8 cut(s) 132, 135, 532, 604, 624, 669, 877, 1623
FokI GGATG 2 cut(s) 139, 1955
FriOI GRGCYC 2 cut(s) 1123, 1603
Fsp4HI GCNGC 8 cut(s) 132, 135, 532, 604, 624, 669, 877, 1623
FspBI CTAG 7 cut(s) 128, 420, 552, 701, 782, 1331, 2158
GlaI GCGC 2 cut(s) 13, 1571
GluI GCNGC 8 cut(s) 132, 135, 532, 604, 624, 669, 877, 1623
GsuI CTGGAG 1 cut(s) 350
HaeII RGCGCY 1 cut(s) 15
HaeIII GGCC 3 cut(s) 68, 166, 1024
HapII CCGG 4 cut(s) 5, 179, 416, 999
HgaI GACGC 1 cut(s) 2045
HhaI GCGC 2 cut(s) 14, 1572
Hin1I GRCGYC 1 cut(s) 12
Hin1II CATG 7 cut(s) 364, 499, 507, 1052, 1107, 1563, 2083
Hin6I GCGC 2 cut(s) 12, 1570
HinP1I GCGC 2 cut(s) 12, 1570
HpaII CCGG 4 cut(s) 5, 179, 416, 999
HphI GGTGA 3 cut(s) 41, 1220, 1456
Hpy166II GTNNAC 4 cut(s) 572, 706, 720, 1282
Hpy188I TCNGA 8 cut(s) 91, 229, 514, 727, 1539, 1635, 1897, 2122
Hpy188III TCNNGA 5 cut(s) 361, 632, 935, 1716, 1964
Hpy8I GTNNAC 4 cut(s) 572, 706, 720, 1282
HpyAV CCTTC 3 cut(s) 385, 419, 2038
HpyCH4III ACNGT 5 cut(s) 584, 1044, 1069, 1236, 1315
HpyCH4IV ACGT 1 cut(s) 2029
HpyF10VI GCNNNNNNNGC 5 cut(s) 128, 325, 882, 897, 2021
HpyF3I CTNAG 6 cut(s) 226, 242, 892, 1473, 1618, 1672
HpySE526I ACGT 1 cut(s) 2029
Hsp92I GRCGYC 1 cut(s) 12
Hsp92II CATG 7 cut(s) 364, 499, 507, 1052, 1107, 1563, 2083
HspAI GCGC 2 cut(s) 12, 1570
KasI GGCGCC 1 cut(s) 11
KroI GCCGGC 1 cut(s) 415
KroNI GCCGGC 1 cut(s) 417
Ksp22I TGATCA 2 cut(s) 1267, 1945
KspI CCGCGG 1 cut(s) 672
Kzo9I GATC 6 cut(s) 280, 547, 1267, 1425, 1718, 1945
LmnI GCTCC 3 cut(s) 482, 1189, 1598
Lsp1109I GCAGC 7 cut(s) 118, 146, 518, 590, 635, 888, 1634
LweI GCATC 1 cut(s) 1957
MaeI CTAG 7 cut(s) 128, 420, 552, 701, 782, 1331, 2158
MaeII ACGT 1 cut(s) 2029
MaeIII GTNAC 6 cut(s) 236, 245, 266, 389, 1038, 1752
MalI GATC 6 cut(s) 282, 549, 1269, 1427, 1720, 1947
MboI GATC 6 cut(s) 280, 547, 1267, 1425, 1718, 1945
MboII GAAGA 7 cut(s) 48, 71, 370, 1147, 1556, 1650, 1910
MfeI CAATTG 2 cut(s) 382, 1728
MflI RGATCY 2 cut(s) 280, 1718
MhlI GDGCHC 2 cut(s) 1123, 1603
MlsI TGGCCA 1 cut(s) 68
MluI ACGCGT 1 cut(s) 1576
MluNI TGGCCA 1 cut(s) 68
Mly113I GGCGCC 1 cut(s) 12
MlyI GAGTC 6 cut(s) 33, 81, 242, 524, 758, 1698
MmeI TCCRAC 5 cut(s) 1233, 1875, 2067, 2084, 2128
Mox20I TGGCCA 1 cut(s) 68
MroNI GCCGGC 1 cut(s) 415
MroXI GAANNNNTTC 2 cut(s) 461, 1548
MscI TGGCCA 1 cut(s) 68
MseI TTAA 9 cut(s) 750, 942, 1164, 1215, 1275, 1401, 1862, 1980, 2100
MslI CAYNNNNRTG 5 cut(s) 470, 1098, 1275, 1437, 1539
Msp20I TGGCCA 1 cut(s) 68
MspA1I CMGCKG 2 cut(s) 626, 671
MspI CCGG 4 cut(s) 5, 179, 416, 999
MspR9I CCNGG 3 cut(s) 6, 999, 1000
MunI CAATTG 2 cut(s) 382, 1728
Mva1269I GAATGC 1 cut(s) 1332
MvnI CGCG 2 cut(s) 671, 1578
MwoI GCNNNNNNNGC 5 cut(s) 128, 325, 882, 897, 2021
NaeI GCCGGC 1 cut(s) 417
NarI GGCGCC 1 cut(s) 12
NciI CCSGG 3 cut(s) 6, 999, 1000
NcoI CCATGG 1 cut(s) 2079
NdeI CATATG 2 cut(s) 439, 968
NdeII GATC 6 cut(s) 280, 547, 1267, 1425, 1718, 1945
NgoMIV GCCGGC 1 cut(s) 415
NheI GCTAGC 2 cut(s) 419, 1330
NlaIII CATG 7 cut(s) 364, 499, 507, 1052, 1107, 1563, 2083
NlaIV GGNNCC 5 cut(s) 13, 223, 433, 1479, 1785
NmuCI GTSAC 5 cut(s) 245, 266, 389, 1038, 1752
OliI CACNNNNGTG 1 cut(s) 1098
PagI TCATGA 1 cut(s) 360
PceI AGGCCT 1 cut(s) 1024
PctI GAATGC 1 cut(s) 1332
PdiI GCCGGC 1 cut(s) 417
PdmI GAANNNNTTC 2 cut(s) 461, 1548
PfeI GAWTC 5 cut(s) 99, 462, 509, 728, 910
PflFI GACNNNGTC 1 cut(s) 767
PkrI GCNGC 8 cut(s) 133, 136, 533, 605, 625, 670, 878, 1624
PleI GAGTC 6 cut(s) 32, 80, 242, 523, 758, 1697
PluTI GGCGCC 1 cut(s) 15
PpsI GAGTC 6 cut(s) 32, 80, 242, 523, 758, 1697
PsiI TTATAA 1 cut(s) 1320
Psp124BI GAGCTC 2 cut(s) 1123, 1603
Psp1406I AACGTT 1 cut(s) 2029
PspN4I GGNNCC 5 cut(s) 13, 223, 433, 1479, 1785
PspPI GGNCC 1 cut(s) 1783
PsrI GAACNNNNNNTAC 2 cut(s) 1272, 1304
PstI CTGCAG 2 cut(s) 136, 625
PstNI CAGNNNCTG 1 cut(s) 531
PsuI RGATCY 2 cut(s) 280, 1718
PsyI GACNNNGTC 1 cut(s) 767
PvuII CAGCTG 1 cut(s) 626
RsaI GTAC 3 cut(s) 1066, 1793, 1801
RsaNI GTAC 3 cut(s) 1065, 1792, 1800
RseI CAYNNNNRTG 5 cut(s) 470, 1098, 1275, 1437, 1539
SacI GAGCTC 2 cut(s) 1123, 1603
SacII CCGCGG 1 cut(s) 672
SaqAI TTAA 9 cut(s) 750, 942, 1164, 1215, 1275, 1401, 1862, 1980, 2100
SatI GCNGC 8 cut(s) 132, 135, 532, 604, 624, 669, 877, 1623
Sau3AI GATC 6 cut(s) 280, 547, 1267, 1425, 1718, 1945
Sau96I GGNCC 1 cut(s) 1783
ScaI AGTACT 1 cut(s) 1793
SchI GAGTC 6 cut(s) 33, 81, 242, 524, 758, 1698
ScrFI CCNGG 3 cut(s) 6, 999, 1000
SduI GDGCHC 2 cut(s) 1123, 1603
SfaNI GCATC 1 cut(s) 1957
SfcI CTRYAG 3 cut(s) 132, 621, 774
SfoI GGCGCC 1 cut(s) 13
Sfr303I CCGCGG 1 cut(s) 672
SgrBI CCGCGG 1 cut(s) 672
SinI GGWCC 1 cut(s) 1783
SmaI CCCGGG 1 cut(s) 1000
SmiMI CAYNNNNRTG 5 cut(s) 470, 1098, 1275, 1437, 1539
SmlI CTYRAG 1 cut(s) 353
SmoI CTYRAG 1 cut(s) 353
SseBI AGGCCT 1 cut(s) 1024
SsiI CCGC 4 cut(s) 319, 669, 671, 1034
SspDI GGCGCC 1 cut(s) 11
SspI AATATT 1 cut(s) 739
SspMI CTAG 7 cut(s) 128, 420, 552, 701, 782, 1331, 2158
SstI GAGCTC 2 cut(s) 1123, 1603
StuI AGGCCT 1 cut(s) 1024
StyD4I CCNGG 3 cut(s) 4, 997, 998
StyI CCWWGG 1 cut(s) 2079
TaaI ACNGT 5 cut(s) 584, 1044, 1069, 1236, 1315
TaiI ACGT 1 cut(s) 2032
TaqI TCGA 4 cut(s) 275, 470, 518, 1972
TatI WGTACW 1 cut(s) 1791
TauI GCSGC 1 cut(s) 671
TfiI GAWTC 5 cut(s) 99, 462, 509, 728, 910
Tru1I TTAA 9 cut(s) 750, 942, 1164, 1215, 1275, 1401, 1862, 1980, 2100
Tru9I TTAA 9 cut(s) 750, 942, 1164, 1215, 1275, 1401, 1862, 1980, 2100
TscAI CASTG 9 cut(s) 109, 250, 394, 532, 595, 649, 887, 1270, 2011
TseFI GTSAC 5 cut(s) 245, 266, 389, 1038, 1752
TseI GCWGC 7 cut(s) 131, 134, 531, 603, 623, 876, 1622
Tsp45I GTSAC 5 cut(s) 245, 266, 389, 1038, 1752
TspDTI ATGAA 9 cut(s) 377, 587, 1037, 1387, 1489, 1509, 1557, 1898, 2081
TspGWI ACGGA 1 cut(s) 1787
TspMI CCCGGG 1 cut(s) 998
TspRI CASTG 9 cut(s) 109, 250, 394, 532, 595, 649, 887, 1270, 2011
Tth111I GACNNNGTC 1 cut(s) 767
VpaK11BI GGWCC 1 cut(s) 1783
XapI RAATTY 3 cut(s) 398, 1496, 2038
XcmI CCANNNNNNNNNTGG 2 cut(s) 182, 1884
XmaI CCCGGG 1 cut(s) 998
XmiI GTMKAC 2 cut(s) 705, 1281
XmnI GAANNNNTTC 2 cut(s) 461, 1548
XspI CTAG 7 cut(s) 128, 420, 552, 701, 782, 1331, 2158
ZrmI AGTACT 1 cut(s) 1793
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.