Rmu_sc0005302.1_g000004

Wall-associated receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005302.1
OG0000052
Physical Location & Seq
Reverse (-)
12537 .. 16066
3530 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005302.1_g000004.1.cds

Sequence Viewer

Length: 2352 bp
atgcttgttatacaagtgatttcattgctagtggtggccgcagcagtagccgctgatcaagcccagcccggctgtcttgaccgatgtggtaacgtcacaatcccatatcctttcggcataggggaggattgttccctgcgcgaagggttcaacctctcttgcgacgaatccgccgaaatcccaaaattcgcggcgggtggtgtccctgttacttacatatcgcttgctgaaggtgagttgcatttaatgactctcaaagcctatgattgctatgacgaacatggtaatatgacagaacaccattccccacagttcccgatccctccttcgttcaccatctctagtaccagaaataagtttacggccgctggctgtgatacttatgcatttctgcaagggagcggccctgatggagatacgtaccaaacggggtgcatgtccatatgcaacaatcttaagagtgctgttaacgggtcatgctctggcatcgggtgttgccagacttccatccctatcggactcaagaatcgaacattcacattgactagcccttctaaccatacgaaggtccatgcgttcaaccgctgcagctacgccttcgttgtggaagaagacaagttcacattcactaatacaagttttccagaactgtacaaaaccgaaaggcttcccacgatttttaactgggaaattcaggatgggccatgtgccgaagctcaaaagaggcccgactatgcttgcaaggcagatagcaagtgtgtgaacagaaccatcaacgaccagactgaaccgtctggttactattgccagtgcttgccaggcttcgaagggaacccatatctcccaaatggttgccaaggtgcgttatttccatctcttttatatttatgtcagtttttgcagctggaaatcaaagctcaaaatcctcaagttagttcacctgattcgttatcagatattgatgagtgcaaggcttcacaaattgacccctgcaacaatggaaggtgcacaaattctcatggaaattactcatgtttatgtaacaaaggtttcagaaaccaagacgcgtggacgtgcatcaaagacaacatcgacaatcaatctgctagaaaactctttttcattttaatgggtattggcagtggtgttggactcttgttgcttgtaattgttgtttggtggttacgtaatgtcataaagaagaggaaagacagaatacgcaaggaaaaattctataaacagaatggtggtttattattagaacaccaattatcttcaggagaagttaatgttgaaaaaattaagttgttcagttcaaaggaattagaaaaagcaacagatcgttttaatgtagacagaattcttggagagggaggccaaggtacagtttacaagggaatgttgacagatgggagaattgttgcggtaaagaaatctaaactagctaatggaggtgaagttgaacaattcattaatgaaattgtgattctttcacaaattaaccacaggaatgtggttaaactattgggttgttgtttagagaccgaagttcctctcttaatctatgaatttttgcccaatggaacactttctcattatattcataatcaccaagatgaggagtttccttttacatgggagacgcgtttgcgagtgtcaaccgaagttgcaggagctcttttctatttacactcggcagcttcttatcctatttaccatcgggatatcaagtctacaaacatcctcttagatgataagtatagagcaaaagttgcagactttgggacttcaagatcagtttctgttgatcagacacatcttaccacactagtacacggaacatttggttatttagatccggagtactttcagtctagccaatttacagacaagagtgatgtgtatagttttggtgtggttcttgttgagctcttgacaggacaaaaaccagtttctgtgacaaggccgcaagaaagcagaagtctagcaacttatttccttatttccatggagcagaattgtctgtttgatattatcgatgctcaggttatgaaggacggtgggaaagatgagattacaaaagtagctaacattgcaaggagatgtttaaatttgaatggaaagaatcgtcctactatgaaagaagtagcagcggagctggaggaagttcgatcaacagtaaaatcttctgatcatgttggacaaattaagttggcagaggaaggagattttagagctcatgaaataaccaccaaggcttattgggatgttgtttctacatcaaccggtccttttacggatggtagtactggatcttcatgcgatgtacaaccactgttgttttccaattaa

Protein Analysis

783

Amino Acids

86.77

Weight (kDa)

5.71

Isoelectric Point (pI)

37.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000052)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16090 AT1G16110 AT1G16120 AT1G16130 AT1G16150 AT1G16160 AT1G16260 AT1G16260 AT1G16260 AT1G79670 AT1G79670
fragaria_vesca FvH4_1g22960 FvH4_3g09860 FvH4_3g10284 FvH4_3g10284 FvH4_3g10540 FvH4_3g24040 FvH4_3g35290 FvH4_3g35290 FvH4_5g06860 FvH4_5g06940 FvH4_6g15920 FvH4_6g15920 FvH4_6g37660 FvH4_6g37670 FvH4_6g37691 FvH4_6g37700 FvH4_6g37710 FvH4_6g38990 FvH4_6g39000 FvH4_6g39020 FvH4_6g39020 FvH4_6g39020 FvH4_6g39021 FvH4_6g39030 FvH4_6g39030 FvH4_6g39031 FvH4_6g39032 FvH4_6g45200 FvH4_6g45200
malus_domestica MD08G1107900.v1.1 MD09G1145100.v1.1 MD09G1145200.v1.1 MD09G1145300.v1.1 MD09G1145400.v1.1 MD09G1145500.v1.1 MD17G1131600.v1.1 MD17G1131700.v1.1 MD17G1131900.v1.1 MD17G1132000.v1.1
prunus_persica Prupe.1G188400_v2.0.a1 Prupe.1G188700_v2.0.a1 Prupe.3G180500_v2.0.a1 Prupe.3G180600_v2.0.a1 Prupe.3G180700_v2.0.a1 Prupe.3G181000_v2.0.a1 Prupe.3G181100_v2.0.a1 Prupe.3G181100_v2.0.a1 Prupe.3G181200_v2.0.a1 Prupe.3G181200_v2.0.a1 Prupe.3G181400_v2.0.a1 Prupe.3G181500_v2.0.a1 Prupe.3G181600_v2.0.a1 Prupe.3G181800_v2.0.a1 Prupe.3G181900_v2.0.a1 Prupe.3G182000_v2.0.a1 Prupe.3G182100_v2.0.a1 Prupe.3G182200_v2.0.a1 Prupe.3G182300_v2.0.a1 Prupe.3G182400_v2.0.a1 Prupe.3G182500_v2.0.a1 Prupe.3G182600_v2.0.a1 Prupe.3G182700_v2.0.a1 Prupe.5G051200_v2.0.a1 Prupe.5G051300_v2.0.a1 Prupe.5G051400_v2.0.a1 Prupe.5G051500_v2.0.a1 Prupe.5G051600_v2.0.a1 Prupe.5G051600_v2.0.a1 Prupe.5G051800_v2.0.a1
pyrus_communis pycom09g06470 pycom09g06490 pycom09g06510 pycom09g06520 pycom09g06570 pycom09g06580 pycom17g12440 pycom17g12450 pycom17g12530
rosa_chinensis RchiOBHm_Chr2g0117481 RchiOBHm_Chr2g0128321 RchiOBHm_Chr2g0128331 RchiOBHm_Chr2g0128581 RchiOBHm_Chr2g0128591 RchiOBHm_Chr2g0150651 RchiOBHm_Chr2g0150661 RchiOBHm_Chr2g0150741 RchiOBHm_Chr2g0150781 RchiOBHm_Chr2g0152581 RchiOBHm_Chr2g0152591 RchiOBHm_Chr2g0152641 RchiOBHm_Chr2g0152661 RchiOBHm_Chr2g0152711 RchiOBHm_Chr2g0152731 RchiOBHm_Chr2g0152871 RchiOBHm_Chr2g0152881 RchiOBHm_Chr2g0152901 RchiOBHm_Chr2g0152921 RchiOBHm_Chr2g0152931 RchiOBHm_Chr2g0152941 RchiOBHm_Chr3g0469621 RchiOBHm_Chr3g0469631 RchiOBHm_Chr5g0015591 RchiOBHm_Chr5g0046061 RchiOBHm_Chr5g0047341 RchiOBHm_Chr5g0063341 RchiOBHm_Chr5g0063351 RchiOBHm_Chr6g0264381 RchiOBHm_Chr7g0191741 RchiOBHm_Chr7g0210751 RchiOBHm_Chr7g0221871 RchiOBHm_Chr7g0225671 RchiOBHm_Chr7g0225891 RchiOBHm_Chr7g0225901 RchiOBHm_Chr7g0225961 RchiOBHm_Chr7g0225971 RchiOBHm_Chr7g0234031 RchiOBHm_Chr7g0234041
rosa_laevigata RLG00000001780 RLG00000001784 RLG00000001785 RLG00000001788 RLG00000001789 RLG00000001793 RLG00000001794 RLG00000002941 RLG00000004430 RLG00000014259 RLG00000018349 RLG00000019001 RLG00000019005 RLG00000019011 RLG00000020503 RLG00000020507 RLG00000020648 RLG00000020649 RLG00000020651 RLG00000020652 RLG00000020653 RLG00000020655 RLG00000020656 RLG00000020657 RLG00000023668 RLG00000024331 RLG00000034386 RLG00000035624 RLG00000035625
rosa_multiflora Rmu_co8401977.1_g000001 Rmu_co8409989.1_g000001 Rmu_co8432067.1_g000001 Rmu_co8491011.1_g000001 Rmu_sc0000580.1_g000085 Rmu_sc0000740.1_g000012 Rmu_sc0000740.1_g000014 Rmu_sc0000837.1_g000041 Rmu_sc0000837.1_g000077 Rmu_sc0001552.1_g000008 Rmu_sc0001617.1_g000001 Rmu_sc0002082.1_g000006 Rmu_sc0002082.1_g000007 Rmu_sc0002082.1_g000022 Rmu_sc0002989.1_g000013 Rmu_sc0003064.1_g000011 Rmu_sc0003127.1_g000003 Rmu_sc0003127.1_g000014 Rmu_sc0003127.1_g000028 Rmu_sc0003127.1_g000032 Rmu_sc0003127.1_g000034 Rmu_sc0003127.1_g000035 Rmu_sc0003127.1_g000054 Rmu_sc0003127.1_g000055 Rmu_sc0003465.1_g000034 Rmu_sc0005223.1_g000021 Rmu_sc0005302.1_g000004 Rmu_sc0005378.1_g000005 Rmu_sc0005378.1_g000007 Rmu_sc0005378.1_g000017 Rmu_sc0005378.1_g000034 Rmu_sc0005378.1_g000039 Rmu_sc0005378.1_g000042 Rmu_sc0005378.1_g000056 Rmu_sc0005378.1_g000057 Rmu_sc0005378.1_g000058 Rmu_sc0006483.1_g000013 Rmu_sc0008775.1_g000006 Rmu_sc0008775.1_g000011 Rmu_sc0009104.1_g000010 Rmu_sc0009104.1_g000011 Rmu_sc0009104.1_g000020 Rmu_sc0010960.1_g000006 Rmu_sc0011737.1_g000002 Rmu_sc0011737.1_g000004 Rmu_sc0012875.1_g000003 Rmu_sc0013122.1_g000002 Rmu_sc0018944.1_g000002 Rmu_sc0020155.1_g000001 Rmu_sc0020156.1_g000001 Rmu_ssc0000233.1_g000012 Rmu_ssc0000233.1_g000013 Rmu_ssc0000233.1_g000030 Rmu_ssc0000233.1_g000044 Rmu_ssc0000233.1_g000047 Rmu_ssc0000233.1_g000052 Rmu_ssc0000233.1_g000054 Rmu_ssc0000233.1_g000055 Rmu_ssc0000233.1_g000080 Rmu_ssc0000233.1_g000082 Rmu_ssc0000233.1_g000087 Rmu_ssc0000233.1_g000094 Rmu_ssc0000480.1_g000060 Rmu_ssc0000480.1_g000061
rosa_roxburghii Rroxscaffold_1G00017360 Rroxscaffold_1G00017370 Rroxscaffold_1G00060880 Rroxscaffold_2G00095370 Rroxscaffold_2G00095420 Rroxscaffold_2G00095450 Rroxscaffold_2G00095460 Rroxscaffold_2G00095490 Rroxscaffold_2G00095560 Rroxscaffold_2G00095570 Rroxscaffold_2G00096960 Rroxscaffold_2G00097010 Rroxscaffold_2G00126500 Rroxscaffold_3G00233390 Rroxscaffold_3G00233580 Rroxscaffold_3G00263590 Rroxscaffold_6G00411660
rosa_rugosa Rorug01G0142700.1 Rorug01G0148600.1 Rorug02G0212800 Rorug02G0422400 Rorug02G0434700 Rorug02G0434800 Rorug02G0435000 Rorug02G0435200 Rorug02G0435300 Rorug02G0435400 Rorug02G0435700 Rorug02G0435800 Rorug02G0436200 Rorug02G0436300 Rorug03G0102800 Rorug04G0123600 Rorug04G0123700 Rorug04G0123800 Rorug04G0124000 Rorug04G0124000 Rorug04G0124500 Rorug04G0124700 Rorug04G0124900 Rorug05G0028600.1 Rorug05G0356100 Rorug05G0356800 Rorug06G0011900 Rorug07G0092900 Rorug07G0122800 Rorug07G0232500 Rorug07G0232600 Rorug07G0232700
rosa_samantha Rh1AG408900 Rh2AG332700 Rh2AG333400 Rh2AG482100 Rh2AG482200 Rh2AG482500 Rh2AG496000 Rh2AG496100 Rh2AG496200 Rh2AG496300 Rh2AG497100 Rh2AG497200 Rh2AG497400 Rh2BG280300 Rh2BG340500 Rh2BG494400 Rh2BG494900 Rh2BG507800 Rh2BG507900 Rh2BG508000 Rh2BG508100 Rh2BG508300 Rh2BG508500 Rh2BG508700 Rh2BG509200 Rh2BG512700 Rh2CG271900 Rh2CG319100 Rh2CG319400 Rh2CG357200 Rh2CG468400 Rh2CG468500 Rh2CG468800 Rh2CG482200 Rh2CG482300 Rh2CG482400 Rh2CG482500 Rh2CG483200 Rh2CG483300 Rh2CG483500 Rh2CG483600 Rh2DG294600 Rh2DG357100 Rh2DG357700 Rh2DG503400 Rh2DG504300 Rh2DG504900 Rh2DG505500 Rh2DG505900 Rh2DG519000 Rh2DG519100 Rh2DG519300 Rh2DG519400 Rh2DG520000 Rh2DG520200 Rh2DG520500 Rh2DG521000 Rh2DG524300 Rh3AG152400 Rh3AG334400 Rh3BG176100 Rh3CG167200 Rh3DG199400 Rh3DG199500 Rh5AG415900 Rh5BG430800 Rh5CG454300 Rh5DG444600 Rh6AG247500 Rh6AG247700 Rh7AG120600 Rh7AG369800 Rh7AG370800 Rh7AG468300 Rh7BG366400 Rh7CG125200 Rh7CG388700 Rh7CG389400 Rh7CG459600 Rh7DG123300 Rh7DG123400 Rh7DG123800 Rh7DG123900 Rh7DG377200
rosa_wichuraiana Rw0G004850 Rw0G004870 Rw0G013120 Rw1G013520 Rw2G026850 Rw2G026910 Rw2G027120 Rw2G039340 Rw2G039360 Rw2G039410 Rw2G039420 Rw2G039440 Rw2G039520 Rw2G040810 Rw2G040830 Rw2G040850 Rw2G040860 Rw2G040880 Rw2G041210 Rw2G041220 Rw2G041240 Rw2G041250 Rw3G014370 Rw5G010520 Rw5G039070 Rw6G021410 Rw6G021420 Rw7G010280 Rw7G021780 Rw7G031820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 790
AccBSI CCGCTC 1 cut(s) 402
AccI GTMKAC 2 cut(s) 1353, 1733
AccII CGCG 4 cut(s) 141, 191, 1067, 1645
AccIII TCCGGA 1 cut(s) 1858
AclWI GGATC 3 cut(s) 313, 1850, 2320
AcoI YGGCCR 2 cut(s) 36, 363
AcsI RAATTY 7 cut(s) 185, 690, 1012, 1229, 1359, 1568, 2110
AcuI CTGAAG 2 cut(s) 249, 1260
AfaI GTAC 8 cut(s) 346, 422, 653, 1384, 1833, 1865, 2308, 2328
AfiI CCNNNNNNNGG 2 cut(s) 565, 1618
AflII CTTAAG 1 cut(s) 455
AflIII ACRYGT 2 cut(s) 1065, 1643
AgeI ACCGGT 1 cut(s) 2285
AgsI TTSAA 7 cut(s) 151, 580, 1295, 1317, 1463, 1791, 2116
AhlI ACTAGT 1 cut(s) 1828
AjiI CACGTC 1 cut(s) 1074
AjnI CCWGG 1 cut(s) 817
Alw21I GWGCWC 4 cut(s) 1010, 1678, 1932, 2239
Alw26I GTCTC 2 cut(s) 1535, 1634
Alw44I GTGCAC 1 cut(s) 1006
AlwI GGATC 3 cut(s) 313, 1850, 2320
AlwNI CAGNNNCTG 2 cut(s) 1802, 1955
Aor13HI TCCGGA 1 cut(s) 1858
AoxI GGCC 7 cut(s) 36, 363, 403, 701, 725, 1375, 1964
ApaLI GTGCAC 1 cut(s) 1006
ApeKI GCWGC 6 cut(s) 41, 585, 588, 901, 1697, 2150
ApoI RAATTY 7 cut(s) 185, 690, 1012, 1229, 1359, 1568, 2110
AseI ATTAAT 1 cut(s) 1473
AsiGI ACCGGT 1 cut(s) 2285
Asp700I GAANNNNTTC 2 cut(s) 666, 1588
AspLEI GCGC 1 cut(s) 141
AspS9I GGNCC 5 cut(s) 404, 568, 701, 726, 2288
AsuC2I CCSGG 1 cut(s) 69
AsuHPI GGTGA 5 cut(s) 245, 325, 930, 1466, 1601
AsuII TTCGAA 1 cut(s) 825
AvaII GGWCC 2 cut(s) 568, 2288
BaeGI GKGCMC 1 cut(s) 1010
BanII GRGCYC 3 cut(s) 1678, 1932, 2239
BarI GAAGNNNNNNTAC 2 cut(s) 2299, 2331
BbsI GAAGAC 1 cut(s) 618
Bbv12I GWGCWC 4 cut(s) 1010, 1678, 1932, 2239
BbvI GCAGC 6 cut(s) 53, 572, 600, 913, 1709, 2162
BccI CCATC 9 cut(s) 344, 404, 515, 692, 779, 880, 1403, 1725, 2294
BceAI ACGGC 1 cut(s) 378
BciT130I CCWGG 1 cut(s) 819
BclI TGATCA 3 cut(s) 55, 1807, 2191
BcnI CCSGG 1 cut(s) 69
BcoDI GTCTC 2 cut(s) 1535, 1634
BcuI ACTAGT 1 cut(s) 1828
BfaI CTAG 8 cut(s) 29, 342, 546, 1107, 1442, 1829, 1875, 1985
BfmI CTRYAG 1 cut(s) 586
BfrI CTTAAG 1 cut(s) 455
BmcAI AGTACT 2 cut(s) 1865, 2308
Bme1390I CCNGG 2 cut(s) 69, 819
Bme18I GGWCC 2 cut(s) 568, 2288
BmgBI CACGTC 1 cut(s) 1074
BmgT120I GGNCC 5 cut(s) 404, 568, 701, 726, 2288
BmiI GGNNCC 1 cut(s) 833
BmrFI CCNGG 2 cut(s) 69, 819
BmrI ACTGGG 1 cut(s) 694
BmsI GCATC 3 cut(s) 495, 1086, 2029
BmuI ACTGGG 1 cut(s) 694
BpiI GAAGAC 1 cut(s) 618
BpmI CTGGAG 1 cut(s) 2180
Bpu10I CCTNAGC 1 cut(s) 2043
Bpu14I TTCGAA 1 cut(s) 825
BpuEI CTTGAG 2 cut(s) 506, 912
BpuMI CCSGG 1 cut(s) 69
Bsa29I ATCGAT 1 cut(s) 2037
BsaAI YACGTR 2 cut(s) 420, 1187
BsaI GGTCTC 1 cut(s) 1535
BsaJI CCNNGG 4 cut(s) 856, 1378, 2007, 2253
BsaWI WCCGGW 2 cut(s) 1858, 2285
BsaXI ACNNNNNCTCC 2 cut(s) 1443, 1473
Bsc4I CCNNNNNNNGG 2 cut(s) 565, 1618
Bse118I RCCGGY 1 cut(s) 2285
Bse1I ACTGG 4 cut(s) 689, 808, 1949, 2314
Bse3DI GCAATG 2 cut(s) 23, 2091
BseAI TCCGGA 1 cut(s) 1858
BseBI CCWGG 1 cut(s) 819
BseCI ATCGAT 1 cut(s) 2037
BseDI CCNNGG 4 cut(s) 856, 1378, 2007, 2253
BseGI GGATG 5 cut(s) 507, 703, 1740, 2272, 2305
BseLI CCNNNNNNNGG 2 cut(s) 565, 1618
BseMI GCAATG 2 cut(s) 23, 2091
BseMII CTCAG 1 cut(s) 2057
BseNI ACTGG 4 cut(s) 689, 808, 1949, 2314
BseRI GAGGAG 1 cut(s) 1634
BseSI GKGCMC 1 cut(s) 1010
BseX3I CGGCCG 1 cut(s) 363
BseXI GCAGC 6 cut(s) 53, 572, 600, 913, 1709, 2162
BseYI CCCAGC 1 cut(s) 63
Bsh1236I CGCG 4 cut(s) 141, 191, 1067, 1645
Bsh1285I CGRYCG 1 cut(s) 366
BshFI GGCC 7 cut(s) 38, 365, 405, 703, 727, 1377, 1966
BshTI ACCGGT 1 cut(s) 2285
BshVI ATCGAT 1 cut(s) 2037
BsiEI CGRYCG 1 cut(s) 366
BsiHKAI GWGCWC 4 cut(s) 1010, 1678, 1932, 2239
BsiSI CCGG 3 cut(s) 69, 1859, 2286
BslFI GGGAC 2 cut(s) 188, 1798
BslI CCNNNNNNNGG 2 cut(s) 565, 1618
BsmAI GTCTC 2 cut(s) 1535, 1634
BsmBI CGTCTC 1 cut(s) 1634
BsmFI GGGAC 2 cut(s) 188, 1798
BsnI GGCC 7 cut(s) 38, 365, 405, 703, 727, 1377, 1966
Bso31I GGTCTC 1 cut(s) 1535
Bsp119I TTCGAA 1 cut(s) 825
Bsp1286I GDGCHC 4 cut(s) 1010, 1678, 1932, 2239
Bsp13I TCCGGA 1 cut(s) 1858
Bsp1407I TGTACA 2 cut(s) 651, 2326
Bsp143I GATC 9 cut(s) 55, 318, 1339, 1793, 1807, 1855, 2171, 2191, 2312
Bsp19I CCATGG 1 cut(s) 2007
BspANI GGCC 7 cut(s) 38, 365, 405, 703, 727, 1377, 1966
BspCNI CTCAG 1 cut(s) 2056
BspDI ATCGAT 1 cut(s) 2037
BspEI TCCGGA 1 cut(s) 1858
BspFNI CGCG 4 cut(s) 141, 191, 1067, 1645
BspHI TCATGA 1 cut(s) 2239
BspLI GGNNCC 1 cut(s) 833
BspMAI CTGCAG 1 cut(s) 590
BspPI GGATC 3 cut(s) 313, 1850, 2320
BspT104I TTCGAA 1 cut(s) 825
BspTI CTTAAG 1 cut(s) 455
BspTNI GGTCTC 1 cut(s) 1535
BsrBI CCGCTC 1 cut(s) 402
BsrDI GCAATG 2 cut(s) 23, 2091
BsrFI RCCGGY 1 cut(s) 2285
BsrGI TGTACA 2 cut(s) 651, 2326
BsrI ACTGG 4 cut(s) 689, 808, 1949, 2314
BssAI RCCGGY 1 cut(s) 2285
BssECI CCNNGG 4 cut(s) 856, 1378, 2007, 2253
BssMI GATC 9 cut(s) 55, 318, 1339, 1793, 1807, 1855, 2171, 2191, 2312
BssT1I CCWWGG 4 cut(s) 856, 1378, 2007, 2253
Bst2UI CCWGG 1 cut(s) 819
Bst4CI ACNGT 7 cut(s) 312, 651, 792, 1387, 2060, 2179, 2337
Bst6I CTCTTC 1 cut(s) 1196
BstAFI CTTAAG 1 cut(s) 455
BstAPI GCANNNNNTGC 1 cut(s) 1772
BstAUI TGTACA 2 cut(s) 651, 2326
BstBAI YACGTR 2 cut(s) 420, 1187
BstBI TTCGAA 1 cut(s) 825
BstC8I GCNNGC 4 cut(s) 225, 370, 739, 815
BstDEI CTNAG 2 cut(s) 1747, 2043
BstDSI CCRYGG 1 cut(s) 2007
BstF5I GGATG 5 cut(s) 507, 703, 1740, 2272, 2305
BstFNI CGCG 4 cut(s) 141, 191, 1067, 1645
BstHHI GCGC 1 cut(s) 141
BstKTI GATC 9 cut(s) 58, 321, 1342, 1796, 1810, 1858, 2174, 2194, 2315
BstMAI GTCTC 2 cut(s) 1535, 1634
BstMBI GATC 9 cut(s) 55, 318, 1339, 1793, 1807, 1855, 2171, 2191, 2312
BstMCI CGRYCG 1 cut(s) 366
BstMWI GCNNNNNNNGC 7 cut(s) 47, 50, 59, 743, 819, 1772, 2093
BstNI CCWGG 1 cut(s) 819
BstNSI RCATGY 1 cut(s) 439
BstSCI CCNGG 2 cut(s) 67, 817
BstSFI CTRYAG 1 cut(s) 586
BstSLI GKGCMC 1 cut(s) 1010
BstSNI TACGTA 2 cut(s) 420, 1187
BstUI CGCG 4 cut(s) 141, 191, 1067, 1645
BstV1I GCAGC 6 cut(s) 53, 572, 600, 913, 1709, 2162
BstV2I GAAGAC 1 cut(s) 618
BstX2I RGATCY 2 cut(s) 1855, 2312
BstYI RGATCY 2 cut(s) 1855, 2312
BstZI CGGCCG 1 cut(s) 363
Bsu15I ATCGAT 1 cut(s) 2037
BsuRI GGCC 7 cut(s) 38, 365, 405, 703, 727, 1377, 1966
BsuTUI ATCGAT 1 cut(s) 2037
BtgI CCRYGG 1 cut(s) 2007
BtgZI GCGATG 1 cut(s) 2337
BtrI CACGTC 1 cut(s) 1074
BtsCI GGATG 5 cut(s) 507, 703, 1740, 2272, 2305
BtsI GCAGTG 1 cut(s) 1147
BtsIMutI CAGTG 3 cut(s) 815, 1147, 2333
Cac8I GCNNGC 4 cut(s) 225, 370, 739, 815
CaiI CAGNNNCTG 2 cut(s) 1802, 1955
CciI TCATGA 1 cut(s) 2239
CfoI GCGC 1 cut(s) 141
Cfr10I RCCGGY 1 cut(s) 2285
Cfr13I GGNCC 5 cut(s) 404, 568, 701, 726, 2288
ClaI ATCGAT 1 cut(s) 2037
CseI GACGC 2 cut(s) 1073, 1651
Csp6I GTAC 8 cut(s) 345, 421, 652, 1383, 1832, 1864, 2307, 2327
CspAI ACCGGT 1 cut(s) 2285
CspCI CAANNNNNGTGG 2 cut(s) 1049, 1084
CviQI GTAC 8 cut(s) 345, 421, 652, 1383, 1832, 1864, 2307, 2327
DdeI CTNAG 2 cut(s) 1747, 2043
DpnI GATC 9 cut(s) 57, 320, 1341, 1795, 1809, 1857, 2173, 2193, 2314
DpnII GATC 9 cut(s) 55, 318, 1339, 1793, 1807, 1855, 2171, 2191, 2312
DraI TTTAAA 1 cut(s) 2109
DrdI GACNNNNNNGTC 1 cut(s) 790
DseDI GACNNNNNNGTC 1 cut(s) 790
EaeI YGGCCR 2 cut(s) 36, 363
EagI CGGCCG 1 cut(s) 363
Eam1104I CTCTTC 1 cut(s) 1196
EarI CTCTTC 1 cut(s) 1196
EciI GGCGGA 1 cut(s) 160
Ecl136II GAGCTC 3 cut(s) 1676, 1930, 2237
EclXI CGGCCG 1 cut(s) 363
Eco105I TACGTA 2 cut(s) 420, 1187
Eco130I CCWWGG 4 cut(s) 856, 1378, 2007, 2253
Eco24I GRGCYC 3 cut(s) 1678, 1932, 2239
Eco31I GGTCTC 1 cut(s) 1535
Eco32I GATATC 1 cut(s) 1726
Eco47I GGWCC 2 cut(s) 568, 2288
Eco52I CGGCCG 1 cut(s) 363
Eco53kI GAGCTC 3 cut(s) 1676, 1930, 2237
Eco57I CTGAAG 2 cut(s) 249, 1260
EcoICRI GAGCTC 3 cut(s) 1676, 1930, 2237
EcoRI GAATTC 1 cut(s) 1359
EcoRII CCWGG 1 cut(s) 817
EcoRV GATATC 1 cut(s) 1726
EcoT14I CCWWGG 4 cut(s) 856, 1378, 2007, 2253
EcoT22I ATGCAT 1 cut(s) 388
EcoT38I GRGCYC 3 cut(s) 1678, 1932, 2239
ErhI CCWWGG 4 cut(s) 856, 1378, 2007, 2253
Esp3I CGTCTC 1 cut(s) 1634
FaqI GGGAC 2 cut(s) 188, 1798
FauI CCCGC 1 cut(s) 187
FauNDI CATATG 1 cut(s) 443
FbaI TGATCA 3 cut(s) 55, 1807, 2191
FblI GTMKAC 2 cut(s) 1353, 1733
FokI GGATG 5 cut(s) 494, 710, 1727, 2279, 2312
FriOI GRGCYC 3 cut(s) 1678, 1932, 2239
FspBI CTAG 8 cut(s) 29, 342, 546, 1107, 1442, 1829, 1875, 1985
GlaI GCGC 1 cut(s) 140
GsaI CCCAGC 1 cut(s) 67
GsuI CTGGAG 1 cut(s) 2180
HaeIII GGCC 7 cut(s) 38, 365, 405, 703, 727, 1377, 1966
HapII CCGG 3 cut(s) 69, 1859, 2286
HgaI GACGC 2 cut(s) 1073, 1651
HhaI GCGC 1 cut(s) 141
Hin6I GCGC 1 cut(s) 139
HinP1I GCGC 1 cut(s) 139
HincII GTYRAC 3 cut(s) 469, 1404, 1659
HindII GTYRAC 3 cut(s) 469, 1404, 1659
HinfI GANTC 8 cut(s) 167, 250, 519, 526, 944, 1152, 1486, 2125
HpaI GTTAAC 1 cut(s) 469
HpaII CCGG 3 cut(s) 69, 1859, 2286
HphI GGTGA 5 cut(s) 245, 325, 930, 1466, 1601
Hpy188I TCNGA 5 cut(s) 518, 955, 1055, 1812, 2191
Hpy99I CGWCG 1 cut(s) 167
HpyCH4III ACNGT 7 cut(s) 312, 651, 792, 1387, 2060, 2179, 2337
HpyCH4IV ACGT 4 cut(s) 93, 419, 1073, 1186
HpyF10VI GCNNNNNNNGC 7 cut(s) 47, 50, 59, 743, 819, 1772, 2093
HpyF3I CTNAG 2 cut(s) 1747, 2043
HpySE526I ACGT 4 cut(s) 93, 419, 1073, 1186
HspAI GCGC 1 cut(s) 139
Kpn2I TCCGGA 1 cut(s) 1858
Ksp22I TGATCA 3 cut(s) 55, 1807, 2191
KspAI GTTAAC 1 cut(s) 469
Kzo9I GATC 9 cut(s) 55, 318, 1339, 1793, 1807, 1855, 2171, 2191, 2312
LmnI GCTCC 4 cut(s) 399, 1673, 2011, 2155
Lsp1109I GCAGC 6 cut(s) 53, 572, 600, 913, 1709, 2162
LweI GCATC 3 cut(s) 495, 1086, 2029
MaeI CTAG 8 cut(s) 29, 342, 546, 1107, 1442, 1829, 1875, 1985
MaeII ACGT 4 cut(s) 93, 419, 1073, 1186
MaeIII GTNAC 7 cut(s) 89, 94, 208, 797, 1040, 1182, 1957
MalI GATC 9 cut(s) 57, 320, 1341, 1795, 1809, 1857, 2173, 2193, 2314
MbiI CCGCTC 1 cut(s) 402
MboI GATC 9 cut(s) 55, 318, 1339, 1793, 1807, 1855, 2171, 2191, 2312
MboII GAAGA 6 cut(s) 620, 623, 1213, 1266, 2178, 2307
MflI RGATCY 2 cut(s) 1855, 2312
MhlI GDGCHC 4 cut(s) 1010, 1678, 1932, 2239
MluI ACGCGT 2 cut(s) 1065, 1643
MlyI GAGTC 3 cut(s) 244, 513, 1146
MmeI TCCRAC 2 cut(s) 1129, 2179
Mph1103I ATGCAT 1 cut(s) 388
MroI TCCGGA 1 cut(s) 1858
MroXI GAANNNNTTC 2 cut(s) 666, 1588
MslI CAYNNNNRTG 4 cut(s) 1036, 1127, 1509, 1614
MspA1I CMGCKG 5 cut(s) 53, 368, 585, 904, 2153
MspCI CTTAAG 1 cut(s) 455
MspI CCGG 3 cut(s) 69, 1859, 2286
MspR9I CCNGG 2 cut(s) 69, 819
MvaI CCWGG 1 cut(s) 819
MvnI CGCG 4 cut(s) 141, 191, 1067, 1645
MwoI GCNNNNNNNGC 7 cut(s) 47, 50, 59, 743, 819, 1772, 2093
NciI CCSGG 1 cut(s) 69
NcoI CCATGG 1 cut(s) 2007
NdeI CATATG 1 cut(s) 443
NdeII GATC 9 cut(s) 55, 318, 1339, 1793, 1807, 1855, 2171, 2191, 2312
NlaIV GGNNCC 1 cut(s) 833
NmeAIII GCCGAG 1 cut(s) 1673
NmuCI GTSAC 2 cut(s) 94, 1957
NsiI ATGCAT 1 cut(s) 388
NspI RCATGY 1 cut(s) 439
NspV TTCGAA 1 cut(s) 825
PagI TCATGA 1 cut(s) 2239
PcsI WCGNNNNNNNCGW 1 cut(s) 171
PdmI GAANNNNTTC 2 cut(s) 666, 1588
PfeI GAWTC 5 cut(s) 167, 526, 944, 1486, 2125
PinAI ACCGGT 1 cut(s) 2285
PleI GAGTC 3 cut(s) 244, 513, 1146
PpsI GAGTC 3 cut(s) 244, 513, 1146
Ppu21I YACGTR 2 cut(s) 420, 1187
PshBI ATTAAT 1 cut(s) 1473
Psp124BI GAGCTC 3 cut(s) 1678, 1932, 2239
Psp6I CCWGG 1 cut(s) 817
PspFI CCCAGC 1 cut(s) 63
PspGI CCWGG 1 cut(s) 817
PspN4I GGNNCC 1 cut(s) 833
PspPI GGNCC 5 cut(s) 404, 568, 701, 726, 2288
PstI CTGCAG 1 cut(s) 590
PstNI CAGNNNCTG 2 cut(s) 1802, 1955
PsuI RGATCY 2 cut(s) 1855, 2312
PvuII CAGCTG 1 cut(s) 904
RsaI GTAC 8 cut(s) 346, 422, 653, 1384, 1833, 1865, 2308, 2328
RsaNI GTAC 8 cut(s) 345, 421, 652, 1383, 1832, 1864, 2307, 2327
RseI CAYNNNNRTG 4 cut(s) 1036, 1127, 1509, 1614
SacI GAGCTC 3 cut(s) 1678, 1932, 2239
Sau3AI GATC 9 cut(s) 55, 318, 1339, 1793, 1807, 1855, 2171, 2191, 2312
Sau96I GGNCC 5 cut(s) 404, 568, 701, 726, 2288
ScaI AGTACT 2 cut(s) 1865, 2308
SchI GAGTC 3 cut(s) 244, 513, 1146
ScrFI CCNGG 2 cut(s) 69, 819
SduI GDGCHC 4 cut(s) 1010, 1678, 1932, 2239
SfaNI GCATC 3 cut(s) 495, 1086, 2029
SfcI CTRYAG 1 cut(s) 586
SfuI TTCGAA 1 cut(s) 825
SinI GGWCC 2 cut(s) 568, 2288
SmiMI CAYNNNNRTG 4 cut(s) 1036, 1127, 1509, 1614
SmlI CTYRAG 3 cut(s) 455, 521, 927
SmoI CTYRAG 3 cut(s) 455, 521, 927
SnaBI TACGTA 2 cut(s) 420, 1187
SpeI ACTAGT 1 cut(s) 1828
SspMI CTAG 8 cut(s) 29, 342, 546, 1107, 1442, 1829, 1875, 1985
SstI GAGCTC 3 cut(s) 1678, 1932, 2239
StyD4I CCNGG 2 cut(s) 67, 817
StyI CCWWGG 4 cut(s) 856, 1378, 2007, 2253
TaaI ACNGT 7 cut(s) 312, 651, 792, 1387, 2060, 2179, 2337
TaiI ACGT 4 cut(s) 96, 422, 1076, 1189
TaqI TCGA 5 cut(s) 529, 825, 1092, 2037, 2170
TaqII GACCGA 2 cut(s) 96, 1559
TatI WGTACW 5 cut(s) 651, 1831, 1863, 2306, 2326
TauI GCSGC 6 cut(s) 41, 53, 194, 368, 405, 1969
TfiI GAWTC 5 cut(s) 167, 526, 944, 1486, 2125
TscAI CASTG 3 cut(s) 815, 1147, 2340
TseFI GTSAC 2 cut(s) 94, 1957
TseI GCWGC 6 cut(s) 41, 585, 588, 901, 1697, 2150
Tsp45I GTSAC 2 cut(s) 94, 1957
TspGWI ACGGA 2 cut(s) 1851, 2312
TspRI CASTG 3 cut(s) 815, 1147, 2340
Vha464I CTTAAG 1 cut(s) 455
VneI GTGCAC 1 cut(s) 1006
VpaK11BI GGWCC 2 cut(s) 568, 2288
VspI ATTAAT 1 cut(s) 1473
XapI RAATTY 7 cut(s) 185, 690, 1012, 1229, 1359, 1568, 2110
XceI RCATGY 1 cut(s) 439
XmiI GTMKAC 2 cut(s) 1353, 1733
XmnI GAANNNNTTC 2 cut(s) 666, 1588
XspI CTAG 8 cut(s) 29, 342, 546, 1107, 1442, 1829, 1875, 1985
ZrmI AGTACT 2 cut(s) 1865, 2308
Zsp2I ATGCAT 1 cut(s) 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.