FvH4_6g15920

Wall-associated receptor kinase galacturonan-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000052
Physical Location & Seq
Forward (+)
9935736 .. 9939603
3868 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g15920.t1

Sequence Viewer

Length: 2436 bp
ATGCAACTTTTCTTTTTCAAAAACCAACCAGGAAGTATTGCAGAAGAAGTAGAAGCCCACCTAGCAGTGACAATGCAACGGCTAGTTCAGCACACGATTTTCATTCTACTGCTATATAAATGGCGCACCAGTACAGCATCATCATCATCACCGGAGATAGCACAGAAGAATTGTACATCGCTCTGCGGAGGTGTTCAGATCCCATACCCTTTTGGGATTGGACCTAACAACCATTGTTACTTTGACGGGTGGTTTGAAATAGAATGCAGGAACTCCATAGATTTCCAGTTTTTCAACAGTTCTGTTCCAGAGACGCCGTTCTTGAGGCGTCTACAACTGGAGGTGCTGAGTATTTCCATCGTAAACGCAACGCTTCAGGTTCTGAGCCCTGTTACTTTCTTTAGTTGCAAGAGGAAGAAATCTCCGCCCGCACCAAATCTGACGGCAAGCCCTTTCTCATACGCCACTGATGATCACAACACTTTCTTTGCAGTCAGTTGTGGCTTATTTGCTTCAATGCGCACAGCCGGACCTCCAAACCATACTGTTGCTGGGTGCGCATCAACCTGTTCTTCAACCACACCCCTCACTAATGAATCCTGTGGATACGGTATCAACTGTTGCCGGACTACCCTATCTCAATACGTCACTAGTTTCAGTGTCATGCAAGAACAAGATGAAACAAGAAGAAATGCGATGGATTGCAAGGACTATGCATTCCTGGTTGACCAGAAGTGGTATGATACTCATATACCAAACGTTAGCTATGTGAAGGATATGGAATTCGTTCCTGTTGAGTTAGACTGGAGCTTAAGCTTGGAAAAGAATAAGTCATTGATCAAATCATTTGAGGCATTCAACATGACTGACTGGAGGAACCTAACTGACTCGAGACCCTTATGCGAGAGAGTTGATCCTGATCCGCTTTTCAATCGAACATGGTATTCATGTACATGTCCAGAAGGCTTTGAAGGAAATCCCTACCTTCTCCAACCTTGTCGAGATATTGATGAATGCAAAGATAATAATCCGTGCGTGGGTCTTGATCTTCATACTACTACTACTTGGAATATTAGTAATGCCAAATGCAACAATACTGTTGGGGGTCATACTTGTTACTCCACTAGAACAGGGGAAACCTGCGAATTGTTTGCCTTTGGGGTTGCTAAGTGCTACTCAAAAAACAGGCCTCATTCTCAGCTCAAGCCAATTCTCTCTGGTCTTGGCGCTGGTATCGGATTATTGTTATTGCTTAGTGGTGCATGGTGGATATATAAGTTTGCAAAGAAATGGAACAACAATAAACTTAAGCAGATGTTTTACAAACGAAATGGTGGATTATTGTTGGAACAACAATTATCGTCAGGTGACATTAACATCGAGAGAATTAAATTGTTCGAATCCAAGGAGTTGCAGAGGTCTACTGACAATTTTAACGCTGAAAGAATTATTGGTCAAGGAGGGCAAGGTACCGTTTATAAAGGCATGTTGATGGATGGAAGAATTGTGGCAGTTAAAAAGTCTAAAATGGTAGATGAAGCAAAGCTTTCAGAATTCATCAATGAGGTTGTCATCCTTTCTCAAATCAACCACAGAAATATTGTTCAACTGTTGGGTTGTTGTTTGGAGACGGAAGTTCCTCTTCTGGTTTATGAATTTATACCCAATGGAAACTTATCTCAGTATATTCATGAGCAGAGTGAAGAATTTCCACTTACATGGGAGATTCGTTTACGAATTGCTACAGAAATTGCAGGAGCTCTAGCCTACTTACATACTTCAACTTTGTTTCCGATTTTTCATAGAGACATCAAGTCCACGAACATACTTCTAGATGACAAGTACAGAGCAAAAATTGCCGACTTTGGAACTTCAAGATTAGTTGCCATTGACCAAACTCACCTGACCACAAGAGTACATGGCACATTTGGTTATTTGGATCCTGAATACTACCAGACAAGCCAGTTTACAGAGAAAAGCGACGTCTACAGCTTCGGAGTGGTGCTTGTTGAGCTCTTGACCGGAAAGAAACCGGTAACAAGGTCAGACGAAGATGAAATGTACAAAAGTCTTGCCTCATATTTCATAGTCTCAATGCAGGAAGATTCTCTATTTGACATTCTTGATGCTCGAGTAGTGAACGAAGGCTCTAAAGATGGAATATTGCGAGTCGCTAATCTTGCAAGGAGATGCTTGGGTTTGAATGGAAGAAAACGCCCCACAATGAGAGAGGTCACTACAGAATTAGAGGTCATCCAATTATCTGAGAAACCTACCGGAGCTCAAGAAAACTGTGAAAGCCTTGAAGTTGAACAAGATTATCAAATTGAGCAGTGGGATGACGTTTTTTCTGGCTCAACTACAATGTCCACTTGGAAAGGTGCTCCGAGTACATCATCAGTTGAACTTCGACGATTGTTTGAGAAGACATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind Pkinase Pkinase_Tyr WAK

Protein Analysis

812

Amino Acids

91.72

Weight (kDa)

5.73

Isoelectric Point (pI)

42.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 58 - 127 8.4e-09 Wall-associated receptor kinase galacturonan-binding
Pkinase PF00069 479 - 746 2.9e-49 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 480 - 749 1.1e-48 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000052)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16090 AT1G16110 AT1G16120 AT1G16130 AT1G16150 AT1G16160 AT1G16260 AT1G16260 AT1G16260 AT1G79670 AT1G79670
fragaria_vesca FvH4_1g22960 FvH4_3g09860 FvH4_3g10284 FvH4_3g10284 FvH4_3g10540 FvH4_3g24040 FvH4_3g35290 FvH4_3g35290 FvH4_5g06860 FvH4_5g06940 FvH4_6g15920 FvH4_6g15920 FvH4_6g37660 FvH4_6g37670 FvH4_6g37691 FvH4_6g37700 FvH4_6g37710 FvH4_6g38990 FvH4_6g39000 FvH4_6g39020 FvH4_6g39020 FvH4_6g39020 FvH4_6g39021 FvH4_6g39030 FvH4_6g39030 FvH4_6g39031 FvH4_6g39032 FvH4_6g45200 FvH4_6g45200
malus_domestica MD08G1107900.v1.1 MD09G1145100.v1.1 MD09G1145200.v1.1 MD09G1145300.v1.1 MD09G1145400.v1.1 MD09G1145500.v1.1 MD17G1131600.v1.1 MD17G1131700.v1.1 MD17G1131900.v1.1 MD17G1132000.v1.1
prunus_persica Prupe.1G188400_v2.0.a1 Prupe.1G188700_v2.0.a1 Prupe.3G180500_v2.0.a1 Prupe.3G180600_v2.0.a1 Prupe.3G180700_v2.0.a1 Prupe.3G181000_v2.0.a1 Prupe.3G181100_v2.0.a1 Prupe.3G181100_v2.0.a1 Prupe.3G181200_v2.0.a1 Prupe.3G181200_v2.0.a1 Prupe.3G181400_v2.0.a1 Prupe.3G181500_v2.0.a1 Prupe.3G181600_v2.0.a1 Prupe.3G181800_v2.0.a1 Prupe.3G181900_v2.0.a1 Prupe.3G182000_v2.0.a1 Prupe.3G182100_v2.0.a1 Prupe.3G182200_v2.0.a1 Prupe.3G182300_v2.0.a1 Prupe.3G182400_v2.0.a1 Prupe.3G182500_v2.0.a1 Prupe.3G182600_v2.0.a1 Prupe.3G182700_v2.0.a1 Prupe.5G051200_v2.0.a1 Prupe.5G051300_v2.0.a1 Prupe.5G051400_v2.0.a1 Prupe.5G051500_v2.0.a1 Prupe.5G051600_v2.0.a1 Prupe.5G051600_v2.0.a1 Prupe.5G051800_v2.0.a1
pyrus_communis pycom09g06470 pycom09g06490 pycom09g06510 pycom09g06520 pycom09g06570 pycom09g06580 pycom17g12440 pycom17g12450 pycom17g12530
rosa_chinensis RchiOBHm_Chr2g0117481 RchiOBHm_Chr2g0128321 RchiOBHm_Chr2g0128331 RchiOBHm_Chr2g0128581 RchiOBHm_Chr2g0128591 RchiOBHm_Chr2g0150651 RchiOBHm_Chr2g0150661 RchiOBHm_Chr2g0150741 RchiOBHm_Chr2g0150781 RchiOBHm_Chr2g0152581 RchiOBHm_Chr2g0152591 RchiOBHm_Chr2g0152641 RchiOBHm_Chr2g0152661 RchiOBHm_Chr2g0152711 RchiOBHm_Chr2g0152731 RchiOBHm_Chr2g0152871 RchiOBHm_Chr2g0152881 RchiOBHm_Chr2g0152901 RchiOBHm_Chr2g0152921 RchiOBHm_Chr2g0152931 RchiOBHm_Chr2g0152941 RchiOBHm_Chr3g0469621 RchiOBHm_Chr3g0469631 RchiOBHm_Chr5g0015591 RchiOBHm_Chr5g0046061 RchiOBHm_Chr5g0047341 RchiOBHm_Chr5g0063341 RchiOBHm_Chr5g0063351 RchiOBHm_Chr6g0264381 RchiOBHm_Chr7g0191741 RchiOBHm_Chr7g0210751 RchiOBHm_Chr7g0221871 RchiOBHm_Chr7g0225671 RchiOBHm_Chr7g0225891 RchiOBHm_Chr7g0225901 RchiOBHm_Chr7g0225961 RchiOBHm_Chr7g0225971 RchiOBHm_Chr7g0234031 RchiOBHm_Chr7g0234041
rosa_laevigata RLG00000001780 RLG00000001784 RLG00000001785 RLG00000001788 RLG00000001789 RLG00000001793 RLG00000001794 RLG00000002941 RLG00000004430 RLG00000014259 RLG00000018349 RLG00000019001 RLG00000019005 RLG00000019011 RLG00000020503 RLG00000020507 RLG00000020648 RLG00000020649 RLG00000020651 RLG00000020652 RLG00000020653 RLG00000020655 RLG00000020656 RLG00000020657 RLG00000023668 RLG00000024331 RLG00000034386 RLG00000035624 RLG00000035625
rosa_multiflora Rmu_co8401977.1_g000001 Rmu_co8409989.1_g000001 Rmu_co8432067.1_g000001 Rmu_co8491011.1_g000001 Rmu_sc0000580.1_g000085 Rmu_sc0000740.1_g000012 Rmu_sc0000740.1_g000014 Rmu_sc0000837.1_g000041 Rmu_sc0000837.1_g000077 Rmu_sc0001552.1_g000008 Rmu_sc0001617.1_g000001 Rmu_sc0002082.1_g000006 Rmu_sc0002082.1_g000007 Rmu_sc0002082.1_g000022 Rmu_sc0002989.1_g000013 Rmu_sc0003064.1_g000011 Rmu_sc0003127.1_g000003 Rmu_sc0003127.1_g000014 Rmu_sc0003127.1_g000028 Rmu_sc0003127.1_g000032 Rmu_sc0003127.1_g000034 Rmu_sc0003127.1_g000035 Rmu_sc0003127.1_g000054 Rmu_sc0003127.1_g000055 Rmu_sc0003465.1_g000034 Rmu_sc0005223.1_g000021 Rmu_sc0005302.1_g000004 Rmu_sc0005378.1_g000005 Rmu_sc0005378.1_g000007 Rmu_sc0005378.1_g000017 Rmu_sc0005378.1_g000034 Rmu_sc0005378.1_g000039 Rmu_sc0005378.1_g000042 Rmu_sc0005378.1_g000056 Rmu_sc0005378.1_g000057 Rmu_sc0005378.1_g000058 Rmu_sc0006483.1_g000013 Rmu_sc0008775.1_g000006 Rmu_sc0008775.1_g000011 Rmu_sc0009104.1_g000010 Rmu_sc0009104.1_g000011 Rmu_sc0009104.1_g000020 Rmu_sc0010960.1_g000006 Rmu_sc0011737.1_g000002 Rmu_sc0011737.1_g000004 Rmu_sc0012875.1_g000003 Rmu_sc0013122.1_g000002 Rmu_sc0018944.1_g000002 Rmu_sc0020155.1_g000001 Rmu_sc0020156.1_g000001 Rmu_ssc0000233.1_g000012 Rmu_ssc0000233.1_g000013 Rmu_ssc0000233.1_g000030 Rmu_ssc0000233.1_g000044 Rmu_ssc0000233.1_g000047 Rmu_ssc0000233.1_g000052 Rmu_ssc0000233.1_g000054 Rmu_ssc0000233.1_g000055 Rmu_ssc0000233.1_g000080 Rmu_ssc0000233.1_g000082 Rmu_ssc0000233.1_g000087 Rmu_ssc0000233.1_g000094 Rmu_ssc0000480.1_g000060 Rmu_ssc0000480.1_g000061
rosa_roxburghii Rroxscaffold_1G00017360 Rroxscaffold_1G00017370 Rroxscaffold_1G00060880 Rroxscaffold_2G00095370 Rroxscaffold_2G00095420 Rroxscaffold_2G00095450 Rroxscaffold_2G00095460 Rroxscaffold_2G00095490 Rroxscaffold_2G00095560 Rroxscaffold_2G00095570 Rroxscaffold_2G00096960 Rroxscaffold_2G00097010 Rroxscaffold_2G00126500 Rroxscaffold_3G00233390 Rroxscaffold_3G00233580 Rroxscaffold_3G00263590 Rroxscaffold_6G00411660
rosa_rugosa Rorug01G0142700.1 Rorug01G0148600.1 Rorug02G0212800 Rorug02G0422400 Rorug02G0434700 Rorug02G0434800 Rorug02G0435000 Rorug02G0435200 Rorug02G0435300 Rorug02G0435400 Rorug02G0435700 Rorug02G0435800 Rorug02G0436200 Rorug02G0436300 Rorug03G0102800 Rorug04G0123600 Rorug04G0123700 Rorug04G0123800 Rorug04G0124000 Rorug04G0124000 Rorug04G0124500 Rorug04G0124700 Rorug04G0124900 Rorug05G0028600.1 Rorug05G0356100 Rorug05G0356800 Rorug06G0011900 Rorug07G0092900 Rorug07G0122800 Rorug07G0232500 Rorug07G0232600 Rorug07G0232700
rosa_samantha Rh1AG408900 Rh2AG332700 Rh2AG333400 Rh2AG482100 Rh2AG482200 Rh2AG482500 Rh2AG496000 Rh2AG496100 Rh2AG496200 Rh2AG496300 Rh2AG497100 Rh2AG497200 Rh2AG497400 Rh2BG280300 Rh2BG340500 Rh2BG494400 Rh2BG494900 Rh2BG507800 Rh2BG507900 Rh2BG508000 Rh2BG508100 Rh2BG508300 Rh2BG508500 Rh2BG508700 Rh2BG509200 Rh2BG512700 Rh2CG271900 Rh2CG319100 Rh2CG319400 Rh2CG357200 Rh2CG468400 Rh2CG468500 Rh2CG468800 Rh2CG482200 Rh2CG482300 Rh2CG482400 Rh2CG482500 Rh2CG483200 Rh2CG483300 Rh2CG483500 Rh2CG483600 Rh2DG294600 Rh2DG357100 Rh2DG357700 Rh2DG503400 Rh2DG504300 Rh2DG504900 Rh2DG505500 Rh2DG505900 Rh2DG519000 Rh2DG519100 Rh2DG519300 Rh2DG519400 Rh2DG520000 Rh2DG520200 Rh2DG520500 Rh2DG521000 Rh2DG524300 Rh3AG152400 Rh3AG334400 Rh3BG176100 Rh3CG167200 Rh3DG199400 Rh3DG199500 Rh5AG415900 Rh5BG430800 Rh5CG454300 Rh5DG444600 Rh6AG247500 Rh6AG247700 Rh7AG120600 Rh7AG369800 Rh7AG370800 Rh7AG468300 Rh7BG366400 Rh7CG125200 Rh7CG388700 Rh7CG389400 Rh7CG459600 Rh7DG123300 Rh7DG123400 Rh7DG123800 Rh7DG123900 Rh7DG377200
rosa_wichuraiana Rw0G004850 Rw0G004870 Rw0G013120 Rw1G013520 Rw2G026850 Rw2G026910 Rw2G027120 Rw2G039340 Rw2G039360 Rw2G039410 Rw2G039420 Rw2G039440 Rw2G039520 Rw2G040810 Rw2G040830 Rw2G040850 Rw2G040860 Rw2G040880 Rw2G041210 Rw2G041220 Rw2G041240 Rw2G041250 Rw3G014370 Rw5G010520 Rw5G039070 Rw6G021410 Rw6G021420 Rw7G010280 Rw7G021780 Rw7G031820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1479
AatII GACGTC 1 cut(s) 1986
Acc16I TGCGCA 2 cut(s) 521, 559
Acc36I ACCTGC 1 cut(s) 1148
Acc65I GGTACC 1 cut(s) 1469
AccB1I GGYRCC 1 cut(s) 1469
AccI GTMKAC 3 cut(s) 331, 1421, 1986
AciI CCGC 4 cut(s) 186, 425, 429, 923
AclI AACGTT 1 cut(s) 759
AclWI GGATC 5 cut(s) 193, 908, 914, 1934, 1947
AcsI RAATTY 4 cut(s) 782, 1553, 1655, 1706
AcuI CTGAAG 1 cut(s) 359
AcyI GRCGYC 3 cut(s) 314, 328, 1983
AfaI GTAC 8 cut(s) 133, 175, 952, 1471, 1844, 1917, 2063, 2392
AfiI CCNNNNNNNGG 1 cut(s) 1037
AflII CTTAAG 2 cut(s) 811, 1307
AflIII ACRYGT 2 cut(s) 953, 2429
AgeI ACCGGT 1 cut(s) 2032
AhdI GACNNNNNGTC 1 cut(s) 1813
AhlI ACTAGT 1 cut(s) 650
AjnI CCWGG 2 cut(s) 28, 720
AjuI GAANNNNNNNTTGG 2 cut(s) 1434, 1466
AluBI AGCT 9 cut(s) 765, 810, 816, 1201, 1546, 1760, 1992, 2014, 2282
AluI AGCT 9 cut(s) 765, 810, 816, 1201, 1546, 1760, 1992, 2014, 2282
Alw21I GWGCWC 4 cut(s) 1762, 2016, 2284, 2386
Alw26I GTCTC 5 cut(s) 305, 886, 1622, 1800, 2095
AlwI GGATC 5 cut(s) 193, 908, 914, 1934, 1947
AlwNI CAGNNNCTG 1 cut(s) 382
Ama87I CYCGRG 2 cut(s) 889, 2130
AoxI GGCC 1 cut(s) 1187
ApoI RAATTY 4 cut(s) 782, 1553, 1655, 1706
ArsI GACNNNNNNTTYG 2 cut(s) 236, 268
AsiGI ACCGGT 1 cut(s) 2032
Asp700I GAANNNNTTC 2 cut(s) 786, 1707
Asp718I GGTACC 1 cut(s) 1469
AspLEI GCGC 4 cut(s) 126, 522, 560, 1229
AspS9I GGNCC 2 cut(s) 221, 530
AsuHPI GGTGA 3 cut(s) 141, 1379, 1892
AsuII TTCGAA 1 cut(s) 1398
AvaI CYCGRG 2 cut(s) 889, 2130
AvaII GGWCC 2 cut(s) 221, 530
BamHI GGATCC 1 cut(s) 1939
BanI GGYRCC 1 cut(s) 1469
BanII GRGCYC 4 cut(s) 389, 1762, 2016, 2284
BbsI GAAGAC 1 cut(s) 2432
Bbv12I GWGCWC 4 cut(s) 1762, 2016, 2284, 2386
BccI CCATC 5 cut(s) 365, 691, 1486, 1490, 2150
BceAI ACGGC 3 cut(s) 95, 301, 459
BcgI CGANNNNNNTGC 2 cut(s) 1133, 1167
BciT130I CCWGG 2 cut(s) 30, 722
BciVI GTATCC 1 cut(s) 599
BclI TGATCA 2 cut(s) 472, 837
BcoDI GTCTC 5 cut(s) 305, 886, 1622, 1800, 2095
BcuI ACTAGT 1 cut(s) 650
BfaI CTAG 6 cut(s) 62, 83, 651, 1125, 1763, 1832
BfmI CTRYAG 3 cut(s) 1743, 1987, 2238
BfoI RGCGCY 1 cut(s) 1230
BfrI CTTAAG 2 cut(s) 811, 1307
BfuAI ACCTGC 1 cut(s) 1148
BfuI GTATCC 1 cut(s) 599
Bme1390I CCNGG 2 cut(s) 30, 722
Bme18I GGWCC 2 cut(s) 221, 530
BmeRI GACNNNNNGTC 1 cut(s) 1813
BmeT110I CYCGRG 2 cut(s) 889, 2130
BmgT120I GGNCC 2 cut(s) 221, 530
BmiI GGNNCC 3 cut(s) 878, 1471, 1941
BmrFI CCNGG 2 cut(s) 30, 722
BmsI GCATC 4 cut(s) 146, 569, 2116, 2180
BpiI GAAGAC 1 cut(s) 2432
BpmI CTGGAG 3 cut(s) 359, 826, 892
Bpu14I TTCGAA 1 cut(s) 1398
BpuEI CTTGAG 3 cut(s) 343, 1187, 2268
BsaBI GATNNNNATC 2 cut(s) 918, 1026
BsaHI GRCGYC 3 cut(s) 314, 328, 1983
BsaI GGTCTC 1 cut(s) 886
BsaJI CCNNGG 1 cut(s) 1404
BsaWI WCCGGW 4 cut(s) 151, 2021, 2032, 2276
Bsc4I CCNNNNNNNGG 1 cut(s) 1037
Bse118I RCCGGY 1 cut(s) 2032
Bse1I ACTGG 6 cut(s) 129, 286, 342, 809, 875, 1963
Bse8I GATNNNNATC 2 cut(s) 918, 1026
BseBI CCWGG 2 cut(s) 30, 722
BseDI CCNNGG 1 cut(s) 1404
BseGI GGATG 4 cut(s) 1501, 1572, 2253, 2344
BseJI GATNNNNATC 2 cut(s) 918, 1026
BseLI CCNNNNNNNGG 1 cut(s) 1037
BseMII CTCAG 5 cut(s) 338, 374, 1211, 1694, 2256
BseNI ACTGG 6 cut(s) 129, 286, 342, 809, 875, 1963
BseYI CCCAGC 1 cut(s) 551
BshFI GGCC 1 cut(s) 1189
BshNI GGYRCC 1 cut(s) 1469
BshTI ACCGGT 1 cut(s) 2032
BsiHKAI GWGCWC 4 cut(s) 1762, 2016, 2284, 2386
BsiHKCI CYCGRG 2 cut(s) 889, 2130
BsiSI CCGG 6 cut(s) 152, 528, 625, 2022, 2033, 2277
BslI CCNNNNNNNGG 1 cut(s) 1037
BsmAI GTCTC 5 cut(s) 305, 886, 1622, 1800, 2095
BsmBI CGTCTC 2 cut(s) 305, 1622
BsmI GAATGC 4 cut(s) 269, 716, 854, 1019
BsnI GGCC 1 cut(s) 1189
Bso31I GGTCTC 1 cut(s) 886
BsoBI CYCGRG 2 cut(s) 889, 2130
Bsp119I TTCGAA 1 cut(s) 1398
Bsp1286I GDGCHC 5 cut(s) 389, 1762, 2016, 2284, 2386
Bsp1407I TGTACA 3 cut(s) 173, 950, 2061
Bsp143I GATC 7 cut(s) 198, 472, 837, 913, 919, 1045, 1939
BspACI CCGC 4 cut(s) 186, 425, 429, 923
BspANI GGCC 1 cut(s) 1189
BspCNI CTCAG 5 cut(s) 339, 375, 1210, 1693, 2257
BspHI TCATGA 1 cut(s) 1690
BspLI GGNNCC 3 cut(s) 878, 1471, 1941
BspMI ACCTGC 1 cut(s) 1148
BspPI GGATC 5 cut(s) 193, 908, 914, 1934, 1947
BspT104I TTCGAA 1 cut(s) 1398
BspT107I GGYRCC 1 cut(s) 1469
BspTI CTTAAG 2 cut(s) 811, 1307
BspTNI GGTCTC 1 cut(s) 886
BsrFI RCCGGY 1 cut(s) 2032
BsrGI TGTACA 3 cut(s) 173, 950, 2061
BsrI ACTGG 6 cut(s) 129, 286, 342, 809, 875, 1963
BssAI RCCGGY 1 cut(s) 2032
BssECI CCNNGG 1 cut(s) 1404
BssMI GATC 7 cut(s) 198, 472, 837, 913, 919, 1045, 1939
BssNI GRCGYC 3 cut(s) 314, 328, 1983
BssT1I CCWWGG 1 cut(s) 1404
Bst2UI CCWGG 2 cut(s) 30, 722
Bst4CI ACNGT 8 cut(s) 299, 547, 611, 620, 1099, 1474, 1611, 2294
Bst6I CTCTTC 1 cut(s) 1647
BstACI GRCGYC 3 cut(s) 314, 328, 1983
BstAFI CTTAAG 2 cut(s) 811, 1307
BstAPI GCANNNNNTGC 1 cut(s) 1856
BstAUI TGTACA 3 cut(s) 173, 950, 2061
BstBI TTCGAA 1 cut(s) 1398
BstC8I GCNNGC 2 cut(s) 429, 448
BstDEI CTNAG 7 cut(s) 347, 383, 1167, 1197, 1253, 1680, 2265
BstF5I GGATG 4 cut(s) 1501, 1572, 2253, 2344
BstH2I RGCGCY 1 cut(s) 1230
BstHHI GCGC 4 cut(s) 126, 522, 560, 1229
BstKTI GATC 7 cut(s) 201, 475, 840, 916, 922, 1048, 1942
BstMAI GTCTC 5 cut(s) 305, 886, 1622, 1800, 2095
BstMBI GATC 7 cut(s) 198, 472, 837, 913, 919, 1045, 1939
BstMWI GCNNNNNNNGC 6 cut(s) 62, 88, 557, 1856, 2011, 2180
BstNI CCWGG 2 cut(s) 30, 722
BstNSI RCATGY 3 cut(s) 957, 1489, 2433
BstSCI CCNGG 2 cut(s) 28, 720
BstSFI CTRYAG 3 cut(s) 1743, 1987, 2238
BstV2I GAAGAC 1 cut(s) 2432
BstX2I RGATCY 2 cut(s) 198, 1939
BstXI CCANNNNNNTGG 1 cut(s) 1719
BstYI RGATCY 2 cut(s) 198, 1939
BsuI GTATCC 1 cut(s) 599
BsuRI GGCC 1 cut(s) 1189
BtgZI GCGATG 2 cut(s) 162, 710
BtsCI GGATG 4 cut(s) 1501, 1572, 2253, 2344
BtsI GCAGTG 2 cut(s) 72, 2339
BtsIMutI CAGTG 4 cut(s) 72, 465, 664, 2339
BveI ACCTGC 1 cut(s) 1148
Cac8I GCNNGC 2 cut(s) 429, 448
CaiI CAGNNNCTG 1 cut(s) 382
CciI TCATGA 1 cut(s) 1690
CfoI GCGC 4 cut(s) 126, 522, 560, 1229
Cfr10I RCCGGY 1 cut(s) 2032
Cfr13I GGNCC 2 cut(s) 221, 530
CseI GACGC 2 cut(s) 317, 322
Csp6I GTAC 8 cut(s) 132, 174, 951, 1470, 1843, 1916, 2062, 2391
CspAI ACCGGT 1 cut(s) 2032
CviQI GTAC 8 cut(s) 132, 174, 951, 1470, 1843, 1916, 2062, 2391
DdeI CTNAG 7 cut(s) 347, 383, 1167, 1197, 1253, 1680, 2265
DpnI GATC 7 cut(s) 200, 474, 839, 915, 921, 1047, 1941
DpnII GATC 7 cut(s) 198, 472, 837, 913, 919, 1045, 1939
DriI GACNNNNNGTC 1 cut(s) 1813
Eam1104I CTCTTC 1 cut(s) 1647
Eam1105I GACNNNNNGTC 1 cut(s) 1813
EarI CTCTTC 1 cut(s) 1647
EciI GGCGGA 1 cut(s) 414
Ecl136II GAGCTC 3 cut(s) 1760, 2014, 2282
Eco130I CCWWGG 1 cut(s) 1404
Eco147I AGGCCT 1 cut(s) 1189
Eco24I GRGCYC 4 cut(s) 389, 1762, 2016, 2284
Eco31I GGTCTC 1 cut(s) 886
Eco47I GGWCC 2 cut(s) 221, 530
Eco53kI GAGCTC 3 cut(s) 1760, 2014, 2282
Eco57I CTGAAG 1 cut(s) 359
Eco88I CYCGRG 2 cut(s) 889, 2130
EcoICRI GAGCTC 3 cut(s) 1760, 2014, 2282
EcoRI GAATTC 2 cut(s) 782, 1553
EcoRII CCWGG 2 cut(s) 28, 720
EcoT14I CCWWGG 1 cut(s) 1404
EcoT22I ATGCAT 1 cut(s) 718
EcoT38I GRGCYC 4 cut(s) 389, 1762, 2016, 2284
ErhI CCWWGG 1 cut(s) 1404
Esp3I CGTCTC 2 cut(s) 305, 1622
FalI AAGNNNNNCTT 4 cut(s) 1530, 1562, 1626, 1658
FauI CCCGC 1 cut(s) 436
FbaI TGATCA 2 cut(s) 472, 837
FblI GTMKAC 3 cut(s) 331, 1421, 1986
FokI GGATG 4 cut(s) 1508, 1559, 2240, 2351
FriOI GRGCYC 4 cut(s) 389, 1762, 2016, 2284
FspAI RTGCGCAY 2 cut(s) 521, 559
FspBI CTAG 6 cut(s) 62, 83, 651, 1125, 1763, 1832
FspI TGCGCA 2 cut(s) 521, 559
GlaI GCGC 4 cut(s) 125, 521, 559, 1228
GsaI CCCAGC 1 cut(s) 555
GsuI CTGGAG 3 cut(s) 359, 826, 892
HaeII RGCGCY 1 cut(s) 1230
HaeIII GGCC 1 cut(s) 1189
HapII CCGG 6 cut(s) 152, 528, 625, 2022, 2033, 2277
HgaI GACGC 2 cut(s) 317, 322
HhaI GCGC 4 cut(s) 126, 522, 560, 1229
Hin1I GRCGYC 3 cut(s) 314, 328, 1983
Hin6I GCGC 4 cut(s) 124, 520, 558, 1227
HinP1I GCGC 4 cut(s) 124, 520, 558, 1227
HincII GTYRAC 1 cut(s) 727
HindII GTYRAC 1 cut(s) 727
HindIII AAGCTT 2 cut(s) 814, 1544
HinfI GANTC 6 cut(s) 596, 887, 1400, 1726, 2105, 2169
HpaII CCGG 6 cut(s) 152, 528, 625, 2022, 2033, 2277
HphI GGTGA 3 cut(s) 141, 1379, 1892
Hpy99I CGWCG 2 cut(s) 1985, 2415
HpyAV CCTTC 5 cut(s) 766, 956, 965, 995, 2138
HpyCH4III ACNGT 8 cut(s) 299, 547, 611, 620, 1099, 1474, 1611, 2294
HpyCH4IV ACGT 4 cut(s) 645, 759, 1983, 2343
HpyF10VI GCNNNNNNNGC 6 cut(s) 62, 88, 557, 1856, 2011, 2180
HpyF3I CTNAG 7 cut(s) 347, 383, 1167, 1197, 1253, 1680, 2265
HpySE526I ACGT 4 cut(s) 645, 759, 1983, 2343
Hsp92I GRCGYC 3 cut(s) 314, 328, 1983
HspAI GCGC 4 cut(s) 124, 520, 558, 1227
KpnI GGTACC 1 cut(s) 1473
Ksp22I TGATCA 2 cut(s) 472, 837
Kzo9I GATC 7 cut(s) 198, 472, 837, 913, 919, 1045, 1939
LmnI GCTCC 4 cut(s) 807, 1757, 2279, 2389
LweI GCATC 4 cut(s) 146, 569, 2116, 2180
MaeI CTAG 6 cut(s) 62, 83, 651, 1125, 1763, 1832
MaeII ACGT 4 cut(s) 645, 759, 1983, 2343
MaeIII GTNAC 8 cut(s) 67, 236, 391, 646, 1115, 1367, 2035, 2233
MalI GATC 7 cut(s) 200, 474, 839, 915, 921, 1047, 1941
MboI GATC 7 cut(s) 198, 472, 837, 913, 919, 1045, 1939
MflI RGATCY 2 cut(s) 198, 1939
MhlI GDGCHC 5 cut(s) 389, 1762, 2016, 2284, 2386
MlyI GAGTC 2 cut(s) 881, 2178
MmeI TCCRAC 2 cut(s) 1015, 1326
Mph1103I ATGCAT 1 cut(s) 718
MroXI GAANNNNTTC 2 cut(s) 786, 1707
MseI TTAA 6 cut(s) 812, 1308, 1374, 1389, 1434, 1515
MslI CAYNNNNRTG 3 cut(s) 952, 1490, 1717
MspCI CTTAAG 2 cut(s) 811, 1307
MspI CCGG 6 cut(s) 152, 528, 625, 2022, 2033, 2277
MspR9I CCNGG 2 cut(s) 30, 722
Mva1269I GAATGC 4 cut(s) 269, 716, 854, 1019
MvaI CCWGG 2 cut(s) 30, 722
MwoI GCNNNNNNNGC 6 cut(s) 62, 88, 557, 1856, 2011, 2180
NdeII GATC 7 cut(s) 198, 472, 837, 913, 919, 1045, 1939
NlaIV GGNNCC 3 cut(s) 878, 1471, 1941
NmuCI GTSAC 4 cut(s) 67, 646, 1367, 2233
NsbI TGCGCA 2 cut(s) 521, 559
NsiI ATGCAT 1 cut(s) 718
NspI RCATGY 3 cut(s) 957, 1489, 2433
NspV TTCGAA 1 cut(s) 1398
PaeR7I CTCGAG 2 cut(s) 889, 2130
PagI TCATGA 1 cut(s) 1690
PceI AGGCCT 1 cut(s) 1189
PciI ACATGT 2 cut(s) 953, 2429
PctI GAATGC 4 cut(s) 269, 716, 854, 1019
PdmI GAANNNNTTC 2 cut(s) 786, 1707
PfeI GAWTC 4 cut(s) 596, 1400, 1726, 2105
PinAI ACCGGT 1 cut(s) 2032
PleI GAGTC 2 cut(s) 881, 2177
PpsI GAGTC 2 cut(s) 881, 2177
PscI ACATGT 2 cut(s) 953, 2429
PsiI TTATAA 1 cut(s) 1479
Psp124BI GAGCTC 3 cut(s) 1762, 2016, 2284
Psp1406I AACGTT 1 cut(s) 759
Psp6I CCWGG 2 cut(s) 28, 720
PspFI CCCAGC 1 cut(s) 551
PspGI CCWGG 2 cut(s) 28, 720
PspN4I GGNNCC 3 cut(s) 878, 1471, 1941
PspPI GGNCC 2 cut(s) 221, 530
PspXI VCTCGAGB 1 cut(s) 2130
PstNI CAGNNNCTG 1 cut(s) 382
PsuI RGATCY 2 cut(s) 198, 1939
RsaI GTAC 8 cut(s) 133, 175, 952, 1471, 1844, 1917, 2063, 2392
RsaNI GTAC 8 cut(s) 132, 174, 951, 1470, 1843, 1916, 2062, 2391
RseI CAYNNNNRTG 3 cut(s) 952, 1490, 1717
SacI GAGCTC 3 cut(s) 1762, 2016, 2284
SaqAI TTAA 6 cut(s) 812, 1308, 1374, 1389, 1434, 1515
Sau3AI GATC 7 cut(s) 198, 472, 837, 913, 919, 1045, 1939
Sau96I GGNCC 2 cut(s) 221, 530
SchI GAGTC 2 cut(s) 881, 2178
ScrFI CCNGG 2 cut(s) 30, 722
SduI GDGCHC 5 cut(s) 389, 1762, 2016, 2284, 2386
SfaNI GCATC 4 cut(s) 146, 569, 2116, 2180
SfcI CTRYAG 3 cut(s) 1743, 1987, 2238
Sfr274I CTCGAG 2 cut(s) 889, 2130
SfuI TTCGAA 1 cut(s) 1398
SinI GGWCC 2 cut(s) 221, 530
SlaI CTCGAG 2 cut(s) 889, 2130
SmiMI CAYNNNNRTG 3 cut(s) 952, 1490, 1717
SmlI CTYRAG 7 cut(s) 322, 811, 889, 1202, 1307, 2130, 2283
SmoI CTYRAG 7 cut(s) 322, 811, 889, 1202, 1307, 2130, 2283
SpeI ACTAGT 1 cut(s) 650
SseBI AGGCCT 1 cut(s) 1189
SsiI CCGC 4 cut(s) 186, 425, 429, 923
SspI AATATT 3 cut(s) 1072, 1600, 2163
SspMI CTAG 6 cut(s) 62, 83, 651, 1125, 1763, 1832
SstI GAGCTC 3 cut(s) 1762, 2016, 2284
StuI AGGCCT 1 cut(s) 1189
StyD4I CCNGG 2 cut(s) 28, 720
StyI CCWWGG 1 cut(s) 1404
TaaI ACNGT 8 cut(s) 299, 547, 611, 620, 1099, 1474, 1611, 2294
TaiI ACGT 4 cut(s) 648, 762, 1986, 2346
TaqI TCGA 7 cut(s) 890, 934, 1000, 1380, 1398, 2131, 2410
TatI WGTACW 7 cut(s) 131, 173, 950, 1842, 1915, 2061, 2390
TfiI GAWTC 4 cut(s) 596, 1400, 1726, 2105
Tru1I TTAA 6 cut(s) 812, 1308, 1374, 1389, 1434, 1515
Tru9I TTAA 6 cut(s) 812, 1308, 1374, 1389, 1434, 1515
TscAI CASTG 4 cut(s) 72, 472, 664, 2339
TseFI GTSAC 4 cut(s) 67, 646, 1367, 2233
Tsp45I GTSAC 4 cut(s) 67, 646, 1367, 2233
TspGWI ACGGA 2 cut(s) 1020, 1646
TspRI CASTG 4 cut(s) 72, 472, 664, 2339
Vha464I CTTAAG 2 cut(s) 811, 1307
VpaK11BI GGWCC 2 cut(s) 221, 530
XapI RAATTY 4 cut(s) 782, 1553, 1655, 1706
XbaI TCTAGA 1 cut(s) 1831
XceI RCATGY 3 cut(s) 957, 1489, 2433
XcmI CCANNNNNNNNNTGG 1 cut(s) 548
XhoI CTCGAG 2 cut(s) 889, 2130
XmiI GTMKAC 3 cut(s) 331, 1421, 1986
XmnI GAANNNNTTC 2 cut(s) 786, 1707
XspI CTAG 6 cut(s) 62, 83, 651, 1125, 1763, 1832
ZraI GACGTC 1 cut(s) 1984
Zsp2I ATGCAT 1 cut(s) 718
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.