Rroxscaffold_2G00095570

wall-associated receptor kinase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000052
Physical Location & Seq
Forward (+)
16949366 .. 16952190
2825 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00095570.1

Sequence Viewer

Length: 2145 bp
ATGGTTGCCCAGTTGCTATTTCATATTACTCTGTTACTGTGGTCTATGAGTGGTACTGAAGTACTAGTTGTAGCATCAGAAGCACCCATAGCAAAGCCTAATTGTCCATCGCATTGTGGAGACATTGAAATCCCATACCCTTTTGGGATAGGAGCAGATTGTTACATTAATGACGACTGGTTCCAAGTATTCTGTGACAACTCTACTGGCTCTCCTACACCTTTCTTGAACGGCACCAATCTGGAGGTACTAGATATTTCTGTTGAAGGCACTCTAAAGAAGAACATGTTCACTGCAGTAGGCTGCGGAGTTATGGCCACAATCACCTCCAACTCAAATGGCGTTACCATTTCAGCCGGGTGCAGGTCCGAATGTTATGATTCTACTGATAGTAAAAATAGTAGCAGCCATAATACTTGCAATGGTGTGGATTGCTGCCAGACTGTCATCCCTCGTTCCCTCTCTGCCTTCAATACTAGTTTCCAGCCGGCTAATGATAATTACACAGAAAGTTCATGTAATTATGCATTTTTGGTTGATCGTAACTGGTTTGAGTCATTTGCCAAAAATTCAACAAATATTTCTGCCACCAGTGATATGGACCAAGTGCCCGTGGAGCTAAAATGGAACTTATACCATTCAACAACTGATGTTTTTGGGACCTATATAGAAACAAATGCATCGTATGGTGGTGACCTAGATGGTAATTGCGTGAGTTACAATGACAGCTCTTCATTATATGGATCCTCAAGGCTTAAATGTAACTGTGGAGGGGGCTCTGAGGGAAATCCATATCTTCTTCAAGGATGCAGAGATATCAATGAATGTGAGGATCCGGAAAACAGAGCTAGTTGTTCTGCAGGGCGCGTATGTGTCAATTTGAATAATGGATGGGGATGCCGCTACCCAGAAACCCGCAAGTCGCGGGTTAAAGTAATCTTCATAGGTATCGGCAGTGGTTTTGGACTGATAGTTCTACTAATTGGTGCATGGCGGTTGTACAAACTTTGGAAGAAAAGGAAAAACATTAAACTCAAGAAGAAGTTCTTTAAACAAAATGGGGGACTATTATTAGAGCAGCAACTATCTTCCGGTGAAGTTAATGTTGAGAAAATTAAGCTGTTCAATTCAAAGGAATTAGAAAAAGCCACAGACCAGTTTAATGCAGATAGAATACTTGGCCAAGGAGGCCAAGGTACTGTTTACAAAGGAATGTTGACAGATGGAAGAATTGTAGCTGTAAAGAAGTCTAAAATAGTTGATGGGGGTGAAGTGGGACAATTCATTAATGAAATTGTCATTCTTTCACAAATTAACCACAGGAATGTGGTCAAACTATTGGGTTGTTGTTTAGAGACCGAAGTTCCTCTTTTGGTTTATGAATTCATACCCAAAGGGACTATCTACCAGTATCTCCATGAACAGAATGAAGAGTTTCCACTCACATGGGAAATGCGCTTAAGGATTTCTGCAGAAGTTGCCGGAGCTCTTTCATACTTACACTCTGCAGCTGCTTTTCCAATTTACCACCGTGATATCAAGTCTACAAACATACTATTAGATGATAAATACAGAGCAAAAGTTGCCGATTTTGGGACTTCAAGATCAGTTTCCATAGACCAAACACACCTAACCACATTTGTACATGGTACATTTGGTTACTTGGATCCAGAGTACTTCCAATCAAGTCAATTTACAGACAAAAGTGACGTGTATAGCTTTGGAGTGGTCCTTGTCGAGCTCTTGACTGGAGAAAAACCAGTTTCTCTGACTAGGTCACAAGAAGCCAGAGGCCTTGTTTCATATTTCAATCTCTCACTGGAGTCGAATAATTTGTTTGATATTATTGATGCTCGAGTTAAGGTGGATGGTGTAACAGGAGATATTTTGACAGTAGCTGATCTTGCAAAAAGATGTCTGGATATGAATGGCAAGAGACGACCTACTATGAAAGAAGTTGCAATGGAGTTGGAGGTGATTCATAAATCAGTAAAATCTTCAAATATACAACAAAATCATGAAGAGGTTGAGTATGTCCGAAATGATGTAACTTGTCCTTGGGATGTTGCTTCTACATTAACCGGGTCAGCTTTGGATGGTGGCACTGTTTCATCAATTGATTCACTACCACTAATGTCTAACTGA

Protein Analysis

714

Amino Acids

78.74

Weight (kDa)

5.36

Isoelectric Point (pI)

33.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 35 - 90 9.6e-11 Wall-associated receptor kinase galacturonan-binding
Pkinase PF00069 388 - 654 9.2e-47 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 389 - 657 1.3e-46 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000052)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16090 AT1G16110 AT1G16120 AT1G16130 AT1G16150 AT1G16160 AT1G16260 AT1G16260 AT1G16260 AT1G79670 AT1G79670
fragaria_vesca FvH4_1g22960 FvH4_3g09860 FvH4_3g10284 FvH4_3g10284 FvH4_3g10540 FvH4_3g24040 FvH4_3g35290 FvH4_3g35290 FvH4_5g06860 FvH4_5g06940 FvH4_6g15920 FvH4_6g15920 FvH4_6g37660 FvH4_6g37670 FvH4_6g37691 FvH4_6g37700 FvH4_6g37710 FvH4_6g38990 FvH4_6g39000 FvH4_6g39020 FvH4_6g39020 FvH4_6g39020 FvH4_6g39021 FvH4_6g39030 FvH4_6g39030 FvH4_6g39031 FvH4_6g39032 FvH4_6g45200 FvH4_6g45200
malus_domestica MD08G1107900.v1.1 MD09G1145100.v1.1 MD09G1145200.v1.1 MD09G1145300.v1.1 MD09G1145400.v1.1 MD09G1145500.v1.1 MD17G1131600.v1.1 MD17G1131700.v1.1 MD17G1131900.v1.1 MD17G1132000.v1.1
prunus_persica Prupe.1G188400_v2.0.a1 Prupe.1G188700_v2.0.a1 Prupe.3G180500_v2.0.a1 Prupe.3G180600_v2.0.a1 Prupe.3G180700_v2.0.a1 Prupe.3G181000_v2.0.a1 Prupe.3G181100_v2.0.a1 Prupe.3G181100_v2.0.a1 Prupe.3G181200_v2.0.a1 Prupe.3G181200_v2.0.a1 Prupe.3G181400_v2.0.a1 Prupe.3G181500_v2.0.a1 Prupe.3G181600_v2.0.a1 Prupe.3G181800_v2.0.a1 Prupe.3G181900_v2.0.a1 Prupe.3G182000_v2.0.a1 Prupe.3G182100_v2.0.a1 Prupe.3G182200_v2.0.a1 Prupe.3G182300_v2.0.a1 Prupe.3G182400_v2.0.a1 Prupe.3G182500_v2.0.a1 Prupe.3G182600_v2.0.a1 Prupe.3G182700_v2.0.a1 Prupe.5G051200_v2.0.a1 Prupe.5G051300_v2.0.a1 Prupe.5G051400_v2.0.a1 Prupe.5G051500_v2.0.a1 Prupe.5G051600_v2.0.a1 Prupe.5G051600_v2.0.a1 Prupe.5G051800_v2.0.a1
pyrus_communis pycom09g06470 pycom09g06490 pycom09g06510 pycom09g06520 pycom09g06570 pycom09g06580 pycom17g12440 pycom17g12450 pycom17g12530
rosa_chinensis RchiOBHm_Chr2g0117481 RchiOBHm_Chr2g0128321 RchiOBHm_Chr2g0128331 RchiOBHm_Chr2g0128581 RchiOBHm_Chr2g0128591 RchiOBHm_Chr2g0150651 RchiOBHm_Chr2g0150661 RchiOBHm_Chr2g0150741 RchiOBHm_Chr2g0150781 RchiOBHm_Chr2g0152581 RchiOBHm_Chr2g0152591 RchiOBHm_Chr2g0152641 RchiOBHm_Chr2g0152661 RchiOBHm_Chr2g0152711 RchiOBHm_Chr2g0152731 RchiOBHm_Chr2g0152871 RchiOBHm_Chr2g0152881 RchiOBHm_Chr2g0152901 RchiOBHm_Chr2g0152921 RchiOBHm_Chr2g0152931 RchiOBHm_Chr2g0152941 RchiOBHm_Chr3g0469621 RchiOBHm_Chr3g0469631 RchiOBHm_Chr5g0015591 RchiOBHm_Chr5g0046061 RchiOBHm_Chr5g0047341 RchiOBHm_Chr5g0063341 RchiOBHm_Chr5g0063351 RchiOBHm_Chr6g0264381 RchiOBHm_Chr7g0191741 RchiOBHm_Chr7g0210751 RchiOBHm_Chr7g0221871 RchiOBHm_Chr7g0225671 RchiOBHm_Chr7g0225891 RchiOBHm_Chr7g0225901 RchiOBHm_Chr7g0225961 RchiOBHm_Chr7g0225971 RchiOBHm_Chr7g0234031 RchiOBHm_Chr7g0234041
rosa_laevigata RLG00000001780 RLG00000001784 RLG00000001785 RLG00000001788 RLG00000001789 RLG00000001793 RLG00000001794 RLG00000002941 RLG00000004430 RLG00000014259 RLG00000018349 RLG00000019001 RLG00000019005 RLG00000019011 RLG00000020503 RLG00000020507 RLG00000020648 RLG00000020649 RLG00000020651 RLG00000020652 RLG00000020653 RLG00000020655 RLG00000020656 RLG00000020657 RLG00000023668 RLG00000024331 RLG00000034386 RLG00000035624 RLG00000035625
rosa_multiflora Rmu_co8401977.1_g000001 Rmu_co8409989.1_g000001 Rmu_co8432067.1_g000001 Rmu_co8491011.1_g000001 Rmu_sc0000580.1_g000085 Rmu_sc0000740.1_g000012 Rmu_sc0000740.1_g000014 Rmu_sc0000837.1_g000041 Rmu_sc0000837.1_g000077 Rmu_sc0001552.1_g000008 Rmu_sc0001617.1_g000001 Rmu_sc0002082.1_g000006 Rmu_sc0002082.1_g000007 Rmu_sc0002082.1_g000022 Rmu_sc0002989.1_g000013 Rmu_sc0003064.1_g000011 Rmu_sc0003127.1_g000003 Rmu_sc0003127.1_g000014 Rmu_sc0003127.1_g000028 Rmu_sc0003127.1_g000032 Rmu_sc0003127.1_g000034 Rmu_sc0003127.1_g000035 Rmu_sc0003127.1_g000054 Rmu_sc0003127.1_g000055 Rmu_sc0003465.1_g000034 Rmu_sc0005223.1_g000021 Rmu_sc0005302.1_g000004 Rmu_sc0005378.1_g000005 Rmu_sc0005378.1_g000007 Rmu_sc0005378.1_g000017 Rmu_sc0005378.1_g000034 Rmu_sc0005378.1_g000039 Rmu_sc0005378.1_g000042 Rmu_sc0005378.1_g000056 Rmu_sc0005378.1_g000057 Rmu_sc0005378.1_g000058 Rmu_sc0006483.1_g000013 Rmu_sc0008775.1_g000006 Rmu_sc0008775.1_g000011 Rmu_sc0009104.1_g000010 Rmu_sc0009104.1_g000011 Rmu_sc0009104.1_g000020 Rmu_sc0010960.1_g000006 Rmu_sc0011737.1_g000002 Rmu_sc0011737.1_g000004 Rmu_sc0012875.1_g000003 Rmu_sc0013122.1_g000002 Rmu_sc0018944.1_g000002 Rmu_sc0020155.1_g000001 Rmu_sc0020156.1_g000001 Rmu_ssc0000233.1_g000012 Rmu_ssc0000233.1_g000013 Rmu_ssc0000233.1_g000030 Rmu_ssc0000233.1_g000044 Rmu_ssc0000233.1_g000047 Rmu_ssc0000233.1_g000052 Rmu_ssc0000233.1_g000054 Rmu_ssc0000233.1_g000055 Rmu_ssc0000233.1_g000080 Rmu_ssc0000233.1_g000082 Rmu_ssc0000233.1_g000087 Rmu_ssc0000233.1_g000094 Rmu_ssc0000480.1_g000060 Rmu_ssc0000480.1_g000061
rosa_roxburghii Rroxscaffold_1G00017360 Rroxscaffold_1G00017370 Rroxscaffold_1G00060880 Rroxscaffold_2G00095370 Rroxscaffold_2G00095420 Rroxscaffold_2G00095450 Rroxscaffold_2G00095460 Rroxscaffold_2G00095490 Rroxscaffold_2G00095560 Rroxscaffold_2G00095570 Rroxscaffold_2G00096960 Rroxscaffold_2G00097010 Rroxscaffold_2G00126500 Rroxscaffold_3G00233390 Rroxscaffold_3G00233580 Rroxscaffold_3G00263590 Rroxscaffold_6G00411660
rosa_rugosa Rorug01G0142700.1 Rorug01G0148600.1 Rorug02G0212800 Rorug02G0422400 Rorug02G0434700 Rorug02G0434800 Rorug02G0435000 Rorug02G0435200 Rorug02G0435300 Rorug02G0435400 Rorug02G0435700 Rorug02G0435800 Rorug02G0436200 Rorug02G0436300 Rorug03G0102800 Rorug04G0123600 Rorug04G0123700 Rorug04G0123800 Rorug04G0124000 Rorug04G0124000 Rorug04G0124500 Rorug04G0124700 Rorug04G0124900 Rorug05G0028600.1 Rorug05G0356100 Rorug05G0356800 Rorug06G0011900 Rorug07G0092900 Rorug07G0122800 Rorug07G0232500 Rorug07G0232600 Rorug07G0232700
rosa_samantha Rh1AG408900 Rh2AG332700 Rh2AG333400 Rh2AG482100 Rh2AG482200 Rh2AG482500 Rh2AG496000 Rh2AG496100 Rh2AG496200 Rh2AG496300 Rh2AG497100 Rh2AG497200 Rh2AG497400 Rh2BG280300 Rh2BG340500 Rh2BG494400 Rh2BG494900 Rh2BG507800 Rh2BG507900 Rh2BG508000 Rh2BG508100 Rh2BG508300 Rh2BG508500 Rh2BG508700 Rh2BG509200 Rh2BG512700 Rh2CG271900 Rh2CG319100 Rh2CG319400 Rh2CG357200 Rh2CG468400 Rh2CG468500 Rh2CG468800 Rh2CG482200 Rh2CG482300 Rh2CG482400 Rh2CG482500 Rh2CG483200 Rh2CG483300 Rh2CG483500 Rh2CG483600 Rh2DG294600 Rh2DG357100 Rh2DG357700 Rh2DG503400 Rh2DG504300 Rh2DG504900 Rh2DG505500 Rh2DG505900 Rh2DG519000 Rh2DG519100 Rh2DG519300 Rh2DG519400 Rh2DG520000 Rh2DG520200 Rh2DG520500 Rh2DG521000 Rh2DG524300 Rh3AG152400 Rh3AG334400 Rh3BG176100 Rh3CG167200 Rh3DG199400 Rh3DG199500 Rh5AG415900 Rh5BG430800 Rh5CG454300 Rh5DG444600 Rh6AG247500 Rh6AG247700 Rh7AG120600 Rh7AG369800 Rh7AG370800 Rh7AG468300 Rh7BG366400 Rh7CG125200 Rh7CG388700 Rh7CG389400 Rh7CG459600 Rh7DG123300 Rh7DG123400 Rh7DG123800 Rh7DG123900 Rh7DG377200
rosa_wichuraiana Rw0G004850 Rw0G004870 Rw0G013120 Rw1G013520 Rw2G026850 Rw2G026910 Rw2G027120 Rw2G039340 Rw2G039360 Rw2G039410 Rw2G039420 Rw2G039440 Rw2G039520 Rw2G040810 Rw2G040830 Rw2G040850 Rw2G040860 Rw2G040880 Rw2G041210 Rw2G041220 Rw2G041240 Rw2G041250 Rw3G014370 Rw5G010520 Rw5G039070 Rw6G021410 Rw6G021420 Rw7G010280 Rw7G021780 Rw7G031820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 354
AccB1I GGYRCC 1 cut(s) 233
AccI GTMKAC 1 cut(s) 1544
AccII CGCG 2 cut(s) 867, 925
AccIII TCCGGA 1 cut(s) 835
AciI CCGC 5 cut(s) 306, 901, 916, 925, 994
AclWI GGATC 6 cut(s) 738, 751, 827, 840, 1661, 1674
AcoI YGGCCR 2 cut(s) 315, 1180
AcsI RAATTY 2 cut(s) 568, 1382
AcuI CTGAAG 1 cut(s) 78
AfaI GTAC 8 cut(s) 55, 63, 249, 1001, 1198, 1644, 1651, 1676
AfiI CCNNNNNNNGG 2 cut(s) 363, 1593
AflII CTTAAG 1 cut(s) 1459
AflIII ACRYGT 2 cut(s) 285, 1710
AhlI ACTAGT 2 cut(s) 64, 476
AjiI CACGTC 1 cut(s) 1711
AloI GAACNNNNNNTCC 2 cut(s) 957, 989
Alw21I GWGCWC 2 cut(s) 1489, 1743
Alw26I GTCTC 3 cut(s) 114, 1349, 1930
AlwI GGATC 6 cut(s) 738, 751, 827, 840, 1661, 1674
AlwNI CAGNNNCTG 1 cut(s) 1898
Ama87I CYCGRG 1 cut(s) 1854
Aor13HI TCCGGA 1 cut(s) 835
AoxI GGCC 4 cut(s) 315, 1180, 1189, 1792
ApeKI GCWGC 6 cut(s) 303, 405, 435, 1078, 1508, 1511
ApoI RAATTY 2 cut(s) 568, 1382
AseI ATTAAT 2 cut(s) 168, 1287
Asp700I GAANNNNTTC 3 cut(s) 287, 1043, 1434
AspLEI GCGC 2 cut(s) 867, 1458
AspS9I GGNCC 4 cut(s) 366, 601, 660, 1729
AsuC2I CCSGG 2 cut(s) 358, 2083
AsuHPI GGTGA 5 cut(s) 316, 704, 1106, 1280, 1987
AvaI CYCGRG 1 cut(s) 1854
AvaII GGWCC 4 cut(s) 366, 601, 660, 1729
BaeGI GKGCMC 1 cut(s) 612
BaeI ACNNNNGTAYC 2 cut(s) 45, 78
BalI TGGCCA 2 cut(s) 317, 1182
BamHI GGATCC 3 cut(s) 743, 832, 1666
BanI GGYRCC 1 cut(s) 233
BanII GRGCYC 3 cut(s) 779, 1489, 1743
Bbv12I GWGCWC 2 cut(s) 1489, 1743
BbvI GCAGC 6 cut(s) 290, 417, 422, 1090, 1498, 1520
BccI CCATC 7 cut(s) 115, 695, 885, 1217, 1256, 1862, 2090
BceAI ACGGC 1 cut(s) 247
BcnI CCSGG 2 cut(s) 358, 2083
BcoDI GTCTC 3 cut(s) 114, 1349, 1930
BcuI ACTAGT 2 cut(s) 64, 476
BfaI CTAG 6 cut(s) 65, 251, 477, 698, 849, 1773
BfmI CTRYAG 4 cut(s) 294, 858, 1470, 1506
BfrI CTTAAG 1 cut(s) 1459
BfuAI ACCTGC 1 cut(s) 354
BglI GCCNNNNNGGC 1 cut(s) 1188
BisI GCNGC 7 cut(s) 304, 406, 436, 901, 1079, 1509, 1512
BlsI GCNGC 7 cut(s) 305, 407, 437, 902, 1080, 1510, 1513
BmcAI AGTACT 2 cut(s) 63, 1676
Bme1390I CCNGG 2 cut(s) 358, 2083
Bme18I GGWCC 4 cut(s) 366, 601, 660, 1729
BmeT110I CYCGRG 1 cut(s) 1854
BmgBI CACGTC 1 cut(s) 1711
BmgT120I GGNCC 4 cut(s) 366, 601, 660, 1729
BmiI GGNNCC 6 cut(s) 182, 235, 661, 745, 834, 1668
BmrFI CCNGG 2 cut(s) 358, 2083
BmrI ACTGGG 1 cut(s) 4
BmsI GCATC 5 cut(s) 83, 689, 797, 887, 1840
BmuI ACTGGG 1 cut(s) 4
BpmI CTGGAG 3 cut(s) 263, 1770, 1841
BpuEI CTTGAG 2 cut(s) 733, 1019
BpuMI CCSGG 2 cut(s) 358, 2083
BsaI GGTCTC 1 cut(s) 1349
BsaJI CCNNGG 4 cut(s) 612, 1183, 1192, 2057
BsaWI WCCGGW 2 cut(s) 835, 1091
BsaXI ACNNNNNCTCC 2 cut(s) 196, 226
Bsc4I CCNNNNNNNGG 2 cut(s) 363, 1593
Bse118I RCCGGY 1 cut(s) 487
Bse3DI GCAATG 2 cut(s) 427, 1968
BseAI TCCGGA 1 cut(s) 835
BseDI CCNNGG 4 cut(s) 612, 1183, 1192, 2057
BseGI GGATG 7 cut(s) 447, 812, 896, 902, 1873, 2068, 2101
BseLI CCNNNNNNNGG 2 cut(s) 363, 1593
BseMI GCAATG 2 cut(s) 427, 1968
BseMII CTCAG 1 cut(s) 771
BseSI GKGCMC 1 cut(s) 612
BseXI GCAGC 6 cut(s) 290, 417, 422, 1090, 1498, 1520
BsgI GTGCAG 1 cut(s) 382
Bsh1236I CGCG 2 cut(s) 867, 925
BshFI GGCC 4 cut(s) 317, 1182, 1191, 1794
BshNI GGYRCC 1 cut(s) 233
BsiHKAI GWGCWC 2 cut(s) 1489, 1743
BsiHKCI CYCGRG 1 cut(s) 1854
BsiSI CCGG 6 cut(s) 357, 488, 836, 1092, 1482, 2082
BslFI GGGAC 5 cut(s) 673, 1077, 1290, 1411, 1609
BslI CCNNNNNNNGG 2 cut(s) 363, 1593
BsmAI GTCTC 3 cut(s) 114, 1349, 1930
BsmBI CGTCTC 1 cut(s) 1930
BsmFI GGGAC 5 cut(s) 673, 1077, 1290, 1411, 1609
BsnI GGCC 4 cut(s) 317, 1182, 1191, 1794
Bso31I GGTCTC 1 cut(s) 1349
BsoBI CYCGRG 1 cut(s) 1854
Bsp1286I GDGCHC 4 cut(s) 612, 779, 1489, 1743
Bsp13I TCCGGA 1 cut(s) 835
Bsp1407I TGTACA 2 cut(s) 999, 1642
Bsp143I GATC 6 cut(s) 538, 743, 832, 1604, 1666, 1900
BspACI CCGC 5 cut(s) 306, 901, 916, 925, 994
BspANI GGCC 4 cut(s) 317, 1182, 1191, 1794
BspCNI CTCAG 1 cut(s) 772
BspEI TCCGGA 1 cut(s) 835
BspFNI CGCG 2 cut(s) 867, 925
BspHI TCATGA 1 cut(s) 2017
BspLI GGNNCC 6 cut(s) 182, 235, 661, 745, 834, 1668
BspMAI CTGCAG 4 cut(s) 298, 862, 1474, 1510
BspMI ACCTGC 1 cut(s) 354
BspPI GGATC 6 cut(s) 738, 751, 827, 840, 1661, 1674
BspQI GCTCTTC 1 cut(s) 736
BspT107I GGYRCC 1 cut(s) 233
BspTI CTTAAG 1 cut(s) 1459
BspTNI GGTCTC 1 cut(s) 1349
BsrDI GCAATG 2 cut(s) 427, 1968
BsrFI RCCGGY 1 cut(s) 487
BsrGI TGTACA 2 cut(s) 999, 1642
BssAI RCCGGY 1 cut(s) 487
BssECI CCNNGG 4 cut(s) 612, 1183, 1192, 2057
BssMI GATC 6 cut(s) 538, 743, 832, 1604, 1666, 1900
BssT1I CCWWGG 3 cut(s) 1183, 1192, 2057
Bst4CI ACNGT 7 cut(s) 39, 445, 767, 1201, 1532, 1894, 2107
Bst6I CTCTTC 3 cut(s) 736, 1425, 2016
BstAFI CTTAAG 1 cut(s) 1459
BstAPI GCANNNNNTGC 2 cut(s) 1478, 1583
BstAUI TGTACA 2 cut(s) 999, 1642
BstC8I GCNNGC 1 cut(s) 489
BstDEI CTNAG 1 cut(s) 780
BstDSI CCRYGG 1 cut(s) 612
BstEII GGTNACC 1 cut(s) 692
BstF5I GGATG 7 cut(s) 447, 812, 896, 902, 1873, 2068, 2101
BstFNI CGCG 2 cut(s) 867, 925
BstHHI GCGC 2 cut(s) 867, 1458
BstKTI GATC 6 cut(s) 541, 746, 835, 1607, 1669, 1903
BstMAI GTCTC 3 cut(s) 114, 1349, 1930
BstMBI GATC 6 cut(s) 538, 743, 832, 1604, 1666, 1900
BstMWI GCNNNNNNNGC 7 cut(s) 80, 89, 616, 1188, 1478, 1583, 1904
BstNSI RCATGY 1 cut(s) 289
BstPI GGTNACC 1 cut(s) 692
BstSCI CCNGG 2 cut(s) 356, 2081
BstSFI CTRYAG 4 cut(s) 294, 858, 1470, 1506
BstSLI GKGCMC 1 cut(s) 612
BstUI CGCG 2 cut(s) 867, 925
BstV1I GCAGC 6 cut(s) 290, 417, 422, 1090, 1498, 1520
BstX2I RGATCY 3 cut(s) 743, 832, 1666
BstXI CCANNNNNNTGG 2 cut(s) 598, 1446
BstYI RGATCY 3 cut(s) 743, 832, 1666
BsuRI GGCC 4 cut(s) 317, 1182, 1191, 1794
BtgI CCRYGG 1 cut(s) 612
BtgZI GCGATG 1 cut(s) 93
BtrI CACGTC 1 cut(s) 1711
BtsCI GGATG 7 cut(s) 447, 812, 896, 902, 1873, 2068, 2101
BtsI GCAGTG 2 cut(s) 291, 961
BtsIMutI CAGTG 5 cut(s) 291, 598, 961, 1817, 2103
BveI ACCTGC 1 cut(s) 354
Cac8I GCNNGC 1 cut(s) 489
CaiI CAGNNNCTG 1 cut(s) 1898
CciI TCATGA 1 cut(s) 2017
CfoI GCGC 2 cut(s) 867, 1458
Cfr10I RCCGGY 1 cut(s) 487
Cfr13I GGNCC 4 cut(s) 366, 601, 660, 1729
Csp6I GTAC 8 cut(s) 54, 62, 248, 1000, 1197, 1643, 1650, 1675
CviAII CATG 7 cut(s) 286, 516, 990, 1418, 1446, 1646, 2018
CviQI GTAC 8 cut(s) 54, 62, 248, 1000, 1197, 1643, 1650, 1675
DdeI CTNAG 1 cut(s) 780
DpnI GATC 6 cut(s) 540, 745, 834, 1606, 1668, 1902
DpnII GATC 6 cut(s) 538, 743, 832, 1604, 1666, 1900
DraI TTTAAA 1 cut(s) 1051
EaeI YGGCCR 2 cut(s) 315, 1180
Eam1104I CTCTTC 3 cut(s) 736, 1425, 2016
EarI CTCTTC 3 cut(s) 736, 1425, 2016
Ecl136II GAGCTC 2 cut(s) 1487, 1741
Eco130I CCWWGG 3 cut(s) 1183, 1192, 2057
Eco147I AGGCCT 1 cut(s) 1794
Eco24I GRGCYC 3 cut(s) 779, 1489, 1743
Eco31I GGTCTC 1 cut(s) 1349
Eco32I GATATC 2 cut(s) 817, 1537
Eco47I GGWCC 4 cut(s) 366, 601, 660, 1729
Eco53kI GAGCTC 2 cut(s) 1487, 1741
Eco57I CTGAAG 1 cut(s) 78
Eco88I CYCGRG 1 cut(s) 1854
Eco91I GGTNACC 1 cut(s) 692
EcoICRI GAGCTC 2 cut(s) 1487, 1741
EcoO109I RGGNCCY 1 cut(s) 660
EcoO65I GGTNACC 1 cut(s) 692
EcoRI GAATTC 1 cut(s) 1382
EcoRV GATATC 2 cut(s) 817, 1537
EcoT14I CCWWGG 3 cut(s) 1183, 1192, 2057
EcoT22I ATGCAT 2 cut(s) 529, 682
EcoT38I GRGCYC 3 cut(s) 779, 1489, 1743
ErhI CCWWGG 3 cut(s) 1183, 1192, 2057
Esp3I CGTCTC 1 cut(s) 1930
FaeI CATG 7 cut(s) 289, 519, 993, 1421, 1449, 1649, 2021
FalI AAGNNNNNCTT 4 cut(s) 1031, 1063, 1353, 1385
FaqI GGGAC 5 cut(s) 673, 1077, 1290, 1411, 1609
FatI CATG 7 cut(s) 285, 515, 989, 1417, 1445, 1645, 2017
FauI CCCGC 2 cut(s) 918, 923
FblI GTMKAC 1 cut(s) 1544
Fnu4HI GCNGC 7 cut(s) 304, 406, 436, 901, 1079, 1509, 1512
FokI GGATG 7 cut(s) 434, 819, 903, 909, 1880, 2075, 2108
FriOI GRGCYC 3 cut(s) 779, 1489, 1743
Fsp4HI GCNGC 7 cut(s) 304, 406, 436, 901, 1079, 1509, 1512
FspBI CTAG 6 cut(s) 65, 251, 477, 698, 849, 1773
GlaI GCGC 2 cut(s) 866, 1457
GluI GCNGC 7 cut(s) 304, 406, 436, 901, 1079, 1509, 1512
GsuI CTGGAG 3 cut(s) 263, 1770, 1841
HaeIII GGCC 4 cut(s) 317, 1182, 1191, 1794
HapII CCGG 6 cut(s) 357, 488, 836, 1092, 1482, 2082
HhaI GCGC 2 cut(s) 867, 1458
Hin1II CATG 7 cut(s) 289, 519, 993, 1421, 1449, 1649, 2021
Hin6I GCGC 2 cut(s) 865, 1456
HinP1I GCGC 2 cut(s) 865, 1456
HincII GTYRAC 1 cut(s) 1218
HindII GTYRAC 1 cut(s) 1218
HinfI GANTC 5 cut(s) 380, 554, 1823, 1978, 2120
HpaII CCGG 6 cut(s) 357, 488, 836, 1092, 1482, 2082
HphI GGTGA 5 cut(s) 316, 704, 1106, 1280, 1987
Hpy166II GTNNAC 4 cut(s) 291, 1204, 1218, 1545
Hpy188I TCNGA 5 cut(s) 79, 370, 781, 1770, 2039
Hpy188III TCNNGA 9 cut(s) 226, 242, 836, 1036, 1602, 1670, 1744, 1919, 2018
Hpy8I GTNNAC 4 cut(s) 291, 1204, 1218, 1545
HpyAV CCTTC 2 cut(s) 260, 478
HpyCH4III ACNGT 7 cut(s) 39, 445, 767, 1201, 1532, 1894, 2107
HpyCH4IV ACGT 1 cut(s) 1710
HpyF10VI GCNNNNNNNGC 7 cut(s) 80, 89, 616, 1188, 1478, 1583, 1904
HpyF3I CTNAG 1 cut(s) 780
HpySE526I ACGT 1 cut(s) 1710
Hsp92II CATG 7 cut(s) 289, 519, 993, 1421, 1449, 1649, 2021
HspAI GCGC 2 cut(s) 865, 1456
Kpn2I TCCGGA 1 cut(s) 835
KroI GCCGGC 1 cut(s) 487
KroNI GCCGGC 1 cut(s) 489
Kzo9I GATC 6 cut(s) 538, 743, 832, 1604, 1666, 1900
LguI GCTCTTC 1 cut(s) 736
LmnI GCTCC 3 cut(s) 152, 616, 1484
Lsp1109I GCAGC 6 cut(s) 290, 417, 422, 1090, 1498, 1520
LweI GCATC 5 cut(s) 83, 689, 797, 887, 1840
MaeI CTAG 6 cut(s) 65, 251, 477, 698, 849, 1773
MaeII ACGT 1 cut(s) 1710
MalI GATC 6 cut(s) 540, 745, 834, 1606, 1668, 1902
MboI GATC 6 cut(s) 538, 743, 832, 1604, 1666, 1900
MfeI CAATTG 1 cut(s) 2115
MflI RGATCY 3 cut(s) 743, 832, 1666
MhlI GDGCHC 4 cut(s) 612, 779, 1489, 1743
MlsI TGGCCA 2 cut(s) 317, 1182
MluNI TGGCCA 2 cut(s) 317, 1182
MlyI GAGTC 2 cut(s) 563, 1832
MmeI TCCRAC 2 cut(s) 354, 1950
Mox20I TGGCCA 2 cut(s) 317, 1182
Mph1103I ATGCAT 2 cut(s) 529, 682
MroI TCCGGA 1 cut(s) 835
MroNI GCCGGC 1 cut(s) 487
MroXI GAANNNNTTC 3 cut(s) 287, 1043, 1434
MscI TGGCCA 2 cut(s) 317, 1182
MslI CAYNNNNRTG 2 cut(s) 1323, 1444
Msp20I TGGCCA 2 cut(s) 317, 1182
MspA1I CMGCKG 1 cut(s) 1511
MspCI CTTAAG 1 cut(s) 1459
MspI CCGG 6 cut(s) 357, 488, 836, 1092, 1482, 2082
MspR9I CCNGG 2 cut(s) 358, 2083
MunI CAATTG 1 cut(s) 2115
MvnI CGCG 2 cut(s) 867, 925
MwoI GCNNNNNNNGC 7 cut(s) 80, 89, 616, 1188, 1478, 1583, 1904
NaeI GCCGGC 1 cut(s) 489
NciI CCSGG 2 cut(s) 358, 2083
NdeII GATC 6 cut(s) 538, 743, 832, 1604, 1666, 1900
NgoMIV GCCGGC 1 cut(s) 487
NlaIII CATG 7 cut(s) 289, 519, 993, 1421, 1449, 1649, 2021
NlaIV GGNNCC 6 cut(s) 182, 235, 661, 745, 834, 1668
NmuCI GTSAC 4 cut(s) 194, 692, 1706, 1776
NsiI ATGCAT 2 cut(s) 529, 682
NspI RCATGY 1 cut(s) 289
PaeR7I CTCGAG 1 cut(s) 1854
PagI TCATGA 1 cut(s) 2017
PceI AGGCCT 1 cut(s) 1794
PciI ACATGT 1 cut(s) 285
PciSI GCTCTTC 1 cut(s) 736
PdiI GCCGGC 1 cut(s) 489
PdmI GAANNNNTTC 3 cut(s) 287, 1043, 1434
PfeI GAWTC 3 cut(s) 380, 1978, 2120
PflFI GACNNNGTC 1 cut(s) 1774
PkrI GCNGC 7 cut(s) 305, 407, 437, 902, 1080, 1510, 1513
PleI GAGTC 2 cut(s) 562, 1831
PpsI GAGTC 2 cut(s) 562, 1831
PpuMI RGGWCCY 1 cut(s) 660
PscI ACATGT 1 cut(s) 285
PshBI ATTAAT 2 cut(s) 168, 1287
Psp124BI GAGCTC 2 cut(s) 1489, 1743
Psp5II RGGWCCY 1 cut(s) 660
PspEI GGTNACC 1 cut(s) 692
PspN4I GGNNCC 6 cut(s) 182, 235, 661, 745, 834, 1668
PspPI GGNCC 4 cut(s) 366, 601, 660, 1729
PspPPI RGGWCCY 1 cut(s) 660
PspXI VCTCGAGB 1 cut(s) 1854
PstI CTGCAG 4 cut(s) 298, 862, 1474, 1510
PstNI CAGNNNCTG 1 cut(s) 1898
PsuI RGATCY 3 cut(s) 743, 832, 1666
PsyI GACNNNGTC 1 cut(s) 1774
PvuII CAGCTG 1 cut(s) 1511
RsaI GTAC 8 cut(s) 55, 63, 249, 1001, 1198, 1644, 1651, 1676
RsaNI GTAC 8 cut(s) 54, 62, 248, 1000, 1197, 1643, 1650, 1675
RseI CAYNNNNRTG 2 cut(s) 1323, 1444
SacI GAGCTC 2 cut(s) 1489, 1743
SapI GCTCTTC 1 cut(s) 736
SatI GCNGC 7 cut(s) 304, 406, 436, 901, 1079, 1509, 1512
Sau3AI GATC 6 cut(s) 538, 743, 832, 1604, 1666, 1900
Sau96I GGNCC 4 cut(s) 366, 601, 660, 1729
ScaI AGTACT 2 cut(s) 63, 1676
SchI GAGTC 2 cut(s) 563, 1832
ScrFI CCNGG 2 cut(s) 358, 2083
SduI GDGCHC 4 cut(s) 612, 779, 1489, 1743
SfaNI GCATC 5 cut(s) 83, 689, 797, 887, 1840
SfcI CTRYAG 4 cut(s) 294, 858, 1470, 1506
SfiI GGCCNNNNNGGCC 1 cut(s) 1188
Sfr274I CTCGAG 1 cut(s) 1854
SinI GGWCC 4 cut(s) 366, 601, 660, 1729
SlaI CTCGAG 1 cut(s) 1854
SmiMI CAYNNNNRTG 2 cut(s) 1323, 1444
SmlI CTYRAG 4 cut(s) 748, 1034, 1459, 1854
SmoI CTYRAG 4 cut(s) 748, 1034, 1459, 1854
SpeI ACTAGT 2 cut(s) 64, 476
SseBI AGGCCT 1 cut(s) 1794
SsiI CCGC 5 cut(s) 306, 901, 916, 925, 994
SspI AATATT 1 cut(s) 580
SspMI CTAG 6 cut(s) 65, 251, 477, 698, 849, 1773
SstI GAGCTC 2 cut(s) 1489, 1743
StuI AGGCCT 1 cut(s) 1794
StyD4I CCNGG 2 cut(s) 356, 2081
StyI CCWWGG 3 cut(s) 1183, 1192, 2057
TaaI ACNGT 7 cut(s) 39, 445, 767, 1201, 1532, 1894, 2107
TaiI ACGT 1 cut(s) 1713
TaqI TCGA 3 cut(s) 1737, 1826, 1855
TaqII GACCGA 1 cut(s) 1373
TatI WGTACW 4 cut(s) 61, 999, 1642, 1674
TauI GCSGC 1 cut(s) 903
TfiI GAWTC 3 cut(s) 380, 1978, 2120
TscAI CASTG 5 cut(s) 298, 598, 961, 1824, 2110
TseFI GTSAC 4 cut(s) 194, 692, 1706, 1776
TseI GCWGC 6 cut(s) 303, 405, 435, 1078, 1508, 1511
Tsp45I GTSAC 4 cut(s) 194, 692, 1706, 1776
TspRI CASTG 5 cut(s) 298, 598, 961, 1824, 2110
Tth111I GACNNNGTC 1 cut(s) 1774
Vha464I CTTAAG 1 cut(s) 1459
VpaK11BI GGWCC 4 cut(s) 366, 601, 660, 1729
VspI ATTAAT 2 cut(s) 168, 1287
XapI RAATTY 2 cut(s) 568, 1382
XceI RCATGY 1 cut(s) 289
XcmI CCANNNNNNNNNTGG 1 cut(s) 595
XhoI CTCGAG 1 cut(s) 1854
XmiI GTMKAC 1 cut(s) 1544
XmnI GAANNNNTTC 3 cut(s) 287, 1043, 1434
XspI CTAG 6 cut(s) 65, 251, 477, 698, 849, 1773
ZrmI AGTACT 2 cut(s) 63, 1676
Zsp2I ATGCAT 2 cut(s) 529, 682
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.