FvH4_5g06940

wall-associated receptor kinase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000052
Physical Location & Seq
Reverse (-)
4110169 .. 4112909
2741 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g06940.t1

Sequence Viewer

Length: 1563 bp
ATGCAATTGCTAATTCATATGAGCATCATGCTGTTATTGTATTTGAGTATTACTGTGCTGGTATCAGGAGCAAACCCACCACAAATAGCATCCCCTAATTGCCCAGACCGCTGCAATGTTAGGATTCCATACCCTTTCGGAGTTGAATCATCCACATCCAAAGGAGCTGGTTATTCCCTAGACCTAGGGTTTGTAATAAACTGCTACCCGAATGAGACTGCAGTGTTGAGGCTCGAGGAACAAGAGGTGCAGGTGCTGGATATTTCCATTGAAGACCGCACGATTCGGGTTAACAACTCTGTTGCTAAATACTGCCAGGGTGATGGTTATACTAATCAGCAACCATCAAAATTAACCGGGACACCTTTCACTTATTCTCAGAGCCACAATACATTTGTTTCGGCCAGTTGCGACCTCCTGGCCGTGGTGTGTGAGTCTGAAGACAATGTCATCCTTGGTGGGTGCAGCTCAGTTTGTGGTGACGAGACGACTCATACTAATAGTACGAGTCACTTGGAGTGTAAGACTAGTACCAACTGTTGCCAGACTAACCTCCCCCCAAACAGGAAGAGTTTGTTTTTTCACTTGCTAACCACTGCTGGAGAGGGTGCAAATTGCTCCACGATTTCCAGTTCACAGCGGAATAAACATGCATTTTTGGTTGACCAAATTTGGTTTCAGAACTTATCTAATTCATCGGCTGCAGGAAGAGTCAGCGAGAAGGATTTGGAGGAGGTTCCTTTGGTGCTAGAATGGGCCATAAACGATTCATTCACACAGTTTAATGAATCTAATTATCCCTCTACTGATTCATCTAGTTGCCAGAAGGTTCTGGCAAACAAACTGCAGACCACCTTTATTTGTAGCTGCTCGGCAGGCTATGAAGGAAATCCTTATCTTGGGAGCCAATTTTGTTCAGATACTGATGAATGCACAGACCGTGCTAAAAACCATTGCTCGGCTGGCGAAAAATGTGTCAACCTTGAAGGGAGCTACCGCTGTAAAAAAGAGAGCAAAGCTAAGATATATGTTCTAGTAGGTCTTGCCGCTTGTCTTGGAACGGTTTTGCTACTTCTCGTTGGATTTTTGGGTTACAGAAAGCGGAAAAAATGGAGTGACAAGGACGCCACAAGAACCCACGAGTCTTGCAACTTATTTCCTCGAGTCCATGGAACTCGTCTTTCTGATATTCTTGATGATCAGGTTGTGAACGATGGTAGCAAAGAAGAAATTGTGACAGTTGCCAACCTTGCAAAACGTTGCCTAAATTTGAATGGAAGGAGACGCCCTACTATGAAAGAAGTAGCAGTGGAGCTGGAGGGAATTCAATTGTCAGTTAAAGGTTTGGGTCGTGTTCAAGGACTTGCAGAGGTTGGTTATGTTCCAACTGATGAAATAACAGAAGCTTGGAATCTACCTAGTGTCAGTTTGTTTGATGATGGAAATAGATTAAAACCTTTTGTTTCCTCGTTTGGCTTAATTGGTGAGGAAAAATTCTTCGACATGCAAAAGCGCAGACTAGAAACTGCATCTCTCAAACACTTCTCATCTAACACCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind

Protein Analysis

521

Amino Acids

57.19

Weight (kDa)

5.78

Isoelectric Point (pI)

37.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 34 - 98 2.8e-09 Wall-associated receptor kinase galacturonan-binding
EGF_CA PF07645 307 - 335 2.3e-06 Calcium-binding EGF domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000052)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16090 AT1G16110 AT1G16120 AT1G16130 AT1G16150 AT1G16160 AT1G16260 AT1G16260 AT1G16260 AT1G79670 AT1G79670
fragaria_vesca FvH4_1g22960 FvH4_3g09860 FvH4_3g10284 FvH4_3g10284 FvH4_3g10540 FvH4_3g24040 FvH4_3g35290 FvH4_3g35290 FvH4_5g06860 FvH4_5g06940 FvH4_6g15920 FvH4_6g15920 FvH4_6g37660 FvH4_6g37670 FvH4_6g37691 FvH4_6g37700 FvH4_6g37710 FvH4_6g38990 FvH4_6g39000 FvH4_6g39020 FvH4_6g39020 FvH4_6g39020 FvH4_6g39021 FvH4_6g39030 FvH4_6g39030 FvH4_6g39031 FvH4_6g39032 FvH4_6g45200 FvH4_6g45200
malus_domestica MD08G1107900.v1.1 MD09G1145100.v1.1 MD09G1145200.v1.1 MD09G1145300.v1.1 MD09G1145400.v1.1 MD09G1145500.v1.1 MD17G1131600.v1.1 MD17G1131700.v1.1 MD17G1131900.v1.1 MD17G1132000.v1.1
prunus_persica Prupe.1G188400_v2.0.a1 Prupe.1G188700_v2.0.a1 Prupe.3G180500_v2.0.a1 Prupe.3G180600_v2.0.a1 Prupe.3G180700_v2.0.a1 Prupe.3G181000_v2.0.a1 Prupe.3G181100_v2.0.a1 Prupe.3G181100_v2.0.a1 Prupe.3G181200_v2.0.a1 Prupe.3G181200_v2.0.a1 Prupe.3G181400_v2.0.a1 Prupe.3G181500_v2.0.a1 Prupe.3G181600_v2.0.a1 Prupe.3G181800_v2.0.a1 Prupe.3G181900_v2.0.a1 Prupe.3G182000_v2.0.a1 Prupe.3G182100_v2.0.a1 Prupe.3G182200_v2.0.a1 Prupe.3G182300_v2.0.a1 Prupe.3G182400_v2.0.a1 Prupe.3G182500_v2.0.a1 Prupe.3G182600_v2.0.a1 Prupe.3G182700_v2.0.a1 Prupe.5G051200_v2.0.a1 Prupe.5G051300_v2.0.a1 Prupe.5G051400_v2.0.a1 Prupe.5G051500_v2.0.a1 Prupe.5G051600_v2.0.a1 Prupe.5G051600_v2.0.a1 Prupe.5G051800_v2.0.a1
pyrus_communis pycom09g06470 pycom09g06490 pycom09g06510 pycom09g06520 pycom09g06570 pycom09g06580 pycom17g12440 pycom17g12450 pycom17g12530
rosa_chinensis RchiOBHm_Chr2g0117481 RchiOBHm_Chr2g0128321 RchiOBHm_Chr2g0128331 RchiOBHm_Chr2g0128581 RchiOBHm_Chr2g0128591 RchiOBHm_Chr2g0150651 RchiOBHm_Chr2g0150661 RchiOBHm_Chr2g0150741 RchiOBHm_Chr2g0150781 RchiOBHm_Chr2g0152581 RchiOBHm_Chr2g0152591 RchiOBHm_Chr2g0152641 RchiOBHm_Chr2g0152661 RchiOBHm_Chr2g0152711 RchiOBHm_Chr2g0152731 RchiOBHm_Chr2g0152871 RchiOBHm_Chr2g0152881 RchiOBHm_Chr2g0152901 RchiOBHm_Chr2g0152921 RchiOBHm_Chr2g0152931 RchiOBHm_Chr2g0152941 RchiOBHm_Chr3g0469621 RchiOBHm_Chr3g0469631 RchiOBHm_Chr5g0015591 RchiOBHm_Chr5g0046061 RchiOBHm_Chr5g0047341 RchiOBHm_Chr5g0063341 RchiOBHm_Chr5g0063351 RchiOBHm_Chr6g0264381 RchiOBHm_Chr7g0191741 RchiOBHm_Chr7g0210751 RchiOBHm_Chr7g0221871 RchiOBHm_Chr7g0225671 RchiOBHm_Chr7g0225891 RchiOBHm_Chr7g0225901 RchiOBHm_Chr7g0225961 RchiOBHm_Chr7g0225971 RchiOBHm_Chr7g0234031 RchiOBHm_Chr7g0234041
rosa_laevigata RLG00000001780 RLG00000001784 RLG00000001785 RLG00000001788 RLG00000001789 RLG00000001793 RLG00000001794 RLG00000002941 RLG00000004430 RLG00000014259 RLG00000018349 RLG00000019001 RLG00000019005 RLG00000019011 RLG00000020503 RLG00000020507 RLG00000020648 RLG00000020649 RLG00000020651 RLG00000020652 RLG00000020653 RLG00000020655 RLG00000020656 RLG00000020657 RLG00000023668 RLG00000024331 RLG00000034386 RLG00000035624 RLG00000035625
rosa_multiflora Rmu_co8401977.1_g000001 Rmu_co8409989.1_g000001 Rmu_co8432067.1_g000001 Rmu_co8491011.1_g000001 Rmu_sc0000580.1_g000085 Rmu_sc0000740.1_g000012 Rmu_sc0000740.1_g000014 Rmu_sc0000837.1_g000041 Rmu_sc0000837.1_g000077 Rmu_sc0001552.1_g000008 Rmu_sc0001617.1_g000001 Rmu_sc0002082.1_g000006 Rmu_sc0002082.1_g000007 Rmu_sc0002082.1_g000022 Rmu_sc0002989.1_g000013 Rmu_sc0003064.1_g000011 Rmu_sc0003127.1_g000003 Rmu_sc0003127.1_g000014 Rmu_sc0003127.1_g000028 Rmu_sc0003127.1_g000032 Rmu_sc0003127.1_g000034 Rmu_sc0003127.1_g000035 Rmu_sc0003127.1_g000054 Rmu_sc0003127.1_g000055 Rmu_sc0003465.1_g000034 Rmu_sc0005223.1_g000021 Rmu_sc0005302.1_g000004 Rmu_sc0005378.1_g000005 Rmu_sc0005378.1_g000007 Rmu_sc0005378.1_g000017 Rmu_sc0005378.1_g000034 Rmu_sc0005378.1_g000039 Rmu_sc0005378.1_g000042 Rmu_sc0005378.1_g000056 Rmu_sc0005378.1_g000057 Rmu_sc0005378.1_g000058 Rmu_sc0006483.1_g000013 Rmu_sc0008775.1_g000006 Rmu_sc0008775.1_g000011 Rmu_sc0009104.1_g000010 Rmu_sc0009104.1_g000011 Rmu_sc0009104.1_g000020 Rmu_sc0010960.1_g000006 Rmu_sc0011737.1_g000002 Rmu_sc0011737.1_g000004 Rmu_sc0012875.1_g000003 Rmu_sc0013122.1_g000002 Rmu_sc0018944.1_g000002 Rmu_sc0020155.1_g000001 Rmu_sc0020156.1_g000001 Rmu_ssc0000233.1_g000012 Rmu_ssc0000233.1_g000013 Rmu_ssc0000233.1_g000030 Rmu_ssc0000233.1_g000044 Rmu_ssc0000233.1_g000047 Rmu_ssc0000233.1_g000052 Rmu_ssc0000233.1_g000054 Rmu_ssc0000233.1_g000055 Rmu_ssc0000233.1_g000080 Rmu_ssc0000233.1_g000082 Rmu_ssc0000233.1_g000087 Rmu_ssc0000233.1_g000094 Rmu_ssc0000480.1_g000060 Rmu_ssc0000480.1_g000061
rosa_roxburghii Rroxscaffold_1G00017360 Rroxscaffold_1G00017370 Rroxscaffold_1G00060880 Rroxscaffold_2G00095370 Rroxscaffold_2G00095420 Rroxscaffold_2G00095450 Rroxscaffold_2G00095460 Rroxscaffold_2G00095490 Rroxscaffold_2G00095560 Rroxscaffold_2G00095570 Rroxscaffold_2G00096960 Rroxscaffold_2G00097010 Rroxscaffold_2G00126500 Rroxscaffold_3G00233390 Rroxscaffold_3G00233580 Rroxscaffold_3G00263590 Rroxscaffold_6G00411660
rosa_rugosa Rorug01G0142700.1 Rorug01G0148600.1 Rorug02G0212800 Rorug02G0422400 Rorug02G0434700 Rorug02G0434800 Rorug02G0435000 Rorug02G0435200 Rorug02G0435300 Rorug02G0435400 Rorug02G0435700 Rorug02G0435800 Rorug02G0436200 Rorug02G0436300 Rorug03G0102800 Rorug04G0123600 Rorug04G0123700 Rorug04G0123800 Rorug04G0124000 Rorug04G0124000 Rorug04G0124500 Rorug04G0124700 Rorug04G0124900 Rorug05G0028600.1 Rorug05G0356100 Rorug05G0356800 Rorug06G0011900 Rorug07G0092900 Rorug07G0122800 Rorug07G0232500 Rorug07G0232600 Rorug07G0232700
rosa_samantha Rh1AG408900 Rh2AG332700 Rh2AG333400 Rh2AG482100 Rh2AG482200 Rh2AG482500 Rh2AG496000 Rh2AG496100 Rh2AG496200 Rh2AG496300 Rh2AG497100 Rh2AG497200 Rh2AG497400 Rh2BG280300 Rh2BG340500 Rh2BG494400 Rh2BG494900 Rh2BG507800 Rh2BG507900 Rh2BG508000 Rh2BG508100 Rh2BG508300 Rh2BG508500 Rh2BG508700 Rh2BG509200 Rh2BG512700 Rh2CG271900 Rh2CG319100 Rh2CG319400 Rh2CG357200 Rh2CG468400 Rh2CG468500 Rh2CG468800 Rh2CG482200 Rh2CG482300 Rh2CG482400 Rh2CG482500 Rh2CG483200 Rh2CG483300 Rh2CG483500 Rh2CG483600 Rh2DG294600 Rh2DG357100 Rh2DG357700 Rh2DG503400 Rh2DG504300 Rh2DG504900 Rh2DG505500 Rh2DG505900 Rh2DG519000 Rh2DG519100 Rh2DG519300 Rh2DG519400 Rh2DG520000 Rh2DG520200 Rh2DG520500 Rh2DG521000 Rh2DG524300 Rh3AG152400 Rh3AG334400 Rh3BG176100 Rh3CG167200 Rh3DG199400 Rh3DG199500 Rh5AG415900 Rh5BG430800 Rh5CG454300 Rh5DG444600 Rh6AG247500 Rh6AG247700 Rh7AG120600 Rh7AG369800 Rh7AG370800 Rh7AG468300 Rh7BG366400 Rh7CG125200 Rh7CG388700 Rh7CG389400 Rh7CG459600 Rh7DG123300 Rh7DG123400 Rh7DG123800 Rh7DG123900 Rh7DG377200
rosa_wichuraiana Rw0G004850 Rw0G004870 Rw0G013120 Rw1G013520 Rw2G026850 Rw2G026910 Rw2G027120 Rw2G039340 Rw2G039360 Rw2G039410 Rw2G039420 Rw2G039440 Rw2G039520 Rw2G040810 Rw2G040830 Rw2G040850 Rw2G040860 Rw2G040880 Rw2G041210 Rw2G041220 Rw2G041240 Rw2G041250 Rw3G014370 Rw5G010520 Rw5G039070 Rw6G021410 Rw6G021420 Rw7G010280 Rw7G021780 Rw7G031820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 241
Acc36I ACCTGC 1 cut(s) 241
AciI CCGC 6 cut(s) 109, 277, 640, 997, 1047, 1102
AclI AACGTT 1 cut(s) 1258
AcoI YGGCCR 2 cut(s) 402, 420
AcsI RAATTY 4 cut(s) 669, 1267, 1323, 1493
AcuI CTGAAG 1 cut(s) 459
AcyI GRCGYC 2 cut(s) 1125, 1285
AfaI GTAC 2 cut(s) 505, 532
AfiI CCNNNNNNNGG 4 cut(s) 424, 564, 899, 958
AgsI TTSAA 6 cut(s) 146, 272, 986, 1273, 1328, 1358
AhlI ACTAGT 1 cut(s) 527
AjnI CCWGG 2 cut(s) 315, 417
AjuI GAANNNNNNNTTGG 2 cut(s) 660, 692
AluBI AGCT 7 cut(s) 167, 468, 867, 993, 1019, 1315, 1406
AluI AGCT 7 cut(s) 167, 468, 867, 993, 1019, 1315, 1406
Alw26I GTCTC 3 cut(s) 209, 479, 1276
AlwNI CAGNNNCTG 2 cut(s) 256, 923
Ama87I CYCGRG 2 cut(s) 233, 1161
AoxI GGCC 3 cut(s) 402, 420, 756
ApeKI GCWGC 4 cut(s) 111, 465, 701, 867
ApoI RAATTY 4 cut(s) 669, 1267, 1323, 1493
ArsI GACNNNNNNTTYG 4 cut(s) 173, 205, 960, 992
AspA2I CCTAGG 1 cut(s) 184
AspLEI GCGC 1 cut(s) 1515
AspS9I GGNCC 1 cut(s) 756
AsuC2I CCSGG 1 cut(s) 358
AsuHPI GGTGA 3 cut(s) 332, 491, 1496
AvaI CYCGRG 2 cut(s) 233, 1161
AvrII CCTAGG 1 cut(s) 184
BauI CACGAG 1 cut(s) 1139
BbsI GAAGAC 2 cut(s) 279, 447
BbvI GCAGC 4 cut(s) 98, 477, 688, 854
BccI CCATC 4 cut(s) 317, 352, 1208, 1433
BceAI ACGGC 1 cut(s) 407
BciT130I CCWGG 2 cut(s) 317, 419
BclI TGATCA 1 cut(s) 1198
BcnI CCSGG 1 cut(s) 358
BcoDI GTCTC 3 cut(s) 209, 479, 1276
BcuI ACTAGT 1 cut(s) 527
BfaI CTAG 8 cut(s) 179, 185, 528, 749, 816, 1034, 1419, 1520
BfmI CTRYAG 3 cut(s) 219, 702, 845
BfuAI ACCTGC 1 cut(s) 241
BisI GCNGC 5 cut(s) 112, 466, 702, 868, 1047
BlnI CCTAGG 1 cut(s) 184
BlsI GCNGC 5 cut(s) 113, 467, 703, 869, 1048
Bme1390I CCNGG 3 cut(s) 317, 358, 419
BmeT110I CYCGRG 2 cut(s) 233, 1161
BmgT120I GGNCC 1 cut(s) 756
BmiI GGNNCC 2 cut(s) 738, 905
BmrFI CCNGG 3 cut(s) 317, 358, 419
BmsI GCATC 3 cut(s) 33, 98, 1538
BpiI GAAGAC 2 cut(s) 279, 447
BpmI CTGGAG 2 cut(s) 621, 1337
BpuMI CCSGG 1 cut(s) 358
BsaHI GRCGYC 2 cut(s) 1125, 1285
BsaJI CCNNGG 5 cut(s) 184, 316, 423, 454, 1168
Bsc4I CCNNNNNNNGG 4 cut(s) 424, 564, 899, 958
Bse1I ACTGG 2 cut(s) 405, 630
Bse3DI GCAATG 2 cut(s) 121, 952
BseBI CCWGG 2 cut(s) 317, 419
BseDI CCNNGG 5 cut(s) 184, 316, 423, 454, 1168
BseGI GGATG 4 cut(s) 89, 149, 155, 450
BseLI CCNNNNNNNGG 4 cut(s) 424, 564, 899, 958
BseMI GCAATG 2 cut(s) 121, 952
BseMII CTCAG 2 cut(s) 392, 483
BseNI ACTGG 2 cut(s) 405, 630
BseRI GAGGAG 1 cut(s) 746
BseXI GCAGC 4 cut(s) 98, 477, 688, 854
BsgI GTGCAG 2 cut(s) 269, 484
BshFI GGCC 3 cut(s) 404, 422, 758
BsiHKCI CYCGRG 2 cut(s) 233, 1161
BsiSI CCGG 1 cut(s) 357
BslFI GGGAC 1 cut(s) 373
BslI CCNNNNNNNGG 4 cut(s) 424, 564, 899, 958
BsmAI GTCTC 3 cut(s) 209, 479, 1276
BsmBI CGTCTC 2 cut(s) 479, 1276
BsmFI GGGAC 1 cut(s) 373
BsmI GAATGC 1 cut(s) 935
BsnI GGCC 3 cut(s) 404, 422, 758
BsoBI CYCGRG 2 cut(s) 233, 1161
Bsp143I GATC 1 cut(s) 1198
Bsp19I CCATGG 1 cut(s) 1168
BspACI CCGC 6 cut(s) 109, 277, 640, 997, 1047, 1102
BspANI GGCC 3 cut(s) 404, 422, 758
BspCNI CTCAG 2 cut(s) 391, 482
BspLI GGNNCC 2 cut(s) 738, 905
BspMAI CTGCAG 3 cut(s) 223, 706, 849
BspMI ACCTGC 1 cut(s) 241
BsrDI GCAATG 2 cut(s) 121, 952
BsrI ACTGG 2 cut(s) 405, 630
BssECI CCNNGG 5 cut(s) 184, 316, 423, 454, 1168
BssMI GATC 1 cut(s) 1198
BssNI GRCGYC 2 cut(s) 1125, 1285
BssSI CACGAG 1 cut(s) 1139
BssT1I CCWWGG 3 cut(s) 184, 454, 1168
Bst2BI CACGAG 1 cut(s) 1139
Bst2UI CCWGG 2 cut(s) 317, 419
Bst4CI ACNGT 6 cut(s) 55, 539, 780, 941, 1063, 1240
Bst6I CTCTTC 2 cut(s) 563, 703
BstACI GRCGYC 2 cut(s) 1125, 1285
BstC8I GCNNGC 2 cut(s) 877, 964
BstDEI CTNAG 3 cut(s) 378, 469, 1020
BstDSI CCRYGG 2 cut(s) 423, 1168
BstF5I GGATG 4 cut(s) 89, 149, 155, 450
BstHHI GCGC 1 cut(s) 1515
BstKTI GATC 1 cut(s) 1201
BstMAI GTCTC 3 cut(s) 209, 479, 1276
BstMBI GATC 1 cut(s) 1198
BstMWI GCNNNNNNNGC 4 cut(s) 108, 876, 963, 1250
BstNI CCWGG 2 cut(s) 317, 419
BstNSI RCATGY 2 cut(s) 653, 1507
BstSCI CCNGG 3 cut(s) 315, 356, 417
BstSFI CTRYAG 3 cut(s) 219, 702, 845
BstV1I GCAGC 4 cut(s) 98, 477, 688, 854
BstV2I GAAGAC 2 cut(s) 279, 447
BstXI CCANNNNNNTGG 1 cut(s) 323
BsuRI GGCC 3 cut(s) 404, 422, 758
BtgI CCRYGG 2 cut(s) 423, 1168
BtsCI GGATG 4 cut(s) 89, 149, 155, 450
BtsI GCAGTG 3 cut(s) 228, 594, 1314
BtsIMutI CAGTG 3 cut(s) 228, 594, 1314
BveI ACCTGC 1 cut(s) 241
Cac8I GCNNGC 2 cut(s) 877, 964
CaiI CAGNNNCTG 2 cut(s) 256, 923
CfoI GCGC 1 cut(s) 1515
Cfr13I GGNCC 1 cut(s) 756
CseI GACGC 2 cut(s) 1133, 1293
Csp6I GTAC 2 cut(s) 504, 531
CspCI CAANNNNNGTGG 2 cut(s) 1127, 1162
CviAII CATG 4 cut(s) 28, 650, 1169, 1504
CviQI GTAC 2 cut(s) 504, 531
DdeI CTNAG 3 cut(s) 378, 469, 1020
DpnI GATC 1 cut(s) 1200
DpnII GATC 1 cut(s) 1198
EaeI YGGCCR 2 cut(s) 402, 420
Eam1104I CTCTTC 2 cut(s) 563, 703
EarI CTCTTC 2 cut(s) 563, 703
Eco130I CCWWGG 3 cut(s) 184, 454, 1168
Eco57I CTGAAG 1 cut(s) 459
Eco88I CYCGRG 2 cut(s) 233, 1161
EcoRI GAATTC 1 cut(s) 1323
EcoRII CCWGG 2 cut(s) 315, 417
EcoT14I CCWWGG 3 cut(s) 184, 454, 1168
EcoT22I ATGCAT 1 cut(s) 655
ErhI CCWWGG 3 cut(s) 184, 454, 1168
Esp3I CGTCTC 2 cut(s) 479, 1276
FaeI CATG 4 cut(s) 31, 653, 1172, 1507
FaqI GGGAC 1 cut(s) 373
FatI CATG 4 cut(s) 27, 649, 1168, 1503
FauNDI CATATG 1 cut(s) 18
FbaI TGATCA 1 cut(s) 1198
Fnu4HI GCNGC 5 cut(s) 112, 466, 702, 868, 1047
FokI GGATG 4 cut(s) 76, 136, 142, 437
Fsp4HI GCNGC 5 cut(s) 112, 466, 702, 868, 1047
FspBI CTAG 8 cut(s) 179, 185, 528, 749, 816, 1034, 1419, 1520
GlaI GCGC 1 cut(s) 1514
GluI GCNGC 5 cut(s) 112, 466, 702, 868, 1047
GsuI CTGGAG 2 cut(s) 621, 1337
HaeIII GGCC 3 cut(s) 404, 422, 758
HapII CCGG 1 cut(s) 357
HgaI GACGC 2 cut(s) 1133, 1293
HhaI GCGC 1 cut(s) 1515
Hin1I GRCGYC 2 cut(s) 1125, 1285
Hin1II CATG 4 cut(s) 31, 653, 1172, 1507
Hin6I GCGC 1 cut(s) 1513
HinP1I GCGC 1 cut(s) 1513
HincII GTYRAC 3 cut(s) 292, 664, 979
HindII GTYRAC 3 cut(s) 292, 664, 979
HindIII AAGCTT 1 cut(s) 1404
HpaI GTTAAC 1 cut(s) 292
HpaII CCGG 1 cut(s) 357
HphI GGTGA 3 cut(s) 332, 491, 1496
Hpy166II GTNNAC 5 cut(s) 292, 635, 664, 979, 1210
Hpy188I TCNGA 6 cut(s) 140, 381, 439, 681, 919, 1186
Hpy188III TCNNGA 2 cut(s) 66, 1193
Hpy8I GTNNAC 5 cut(s) 292, 635, 664, 979, 1210
HpyAV CCTTC 5 cut(s) 715, 820, 878, 980, 1272
HpyCH4III ACNGT 6 cut(s) 55, 539, 780, 941, 1063, 1240
HpyCH4IV ACGT 1 cut(s) 1258
HpyF10VI GCNNNNNNNGC 4 cut(s) 108, 876, 963, 1250
HpyF3I CTNAG 3 cut(s) 378, 469, 1020
HpySE526I ACGT 1 cut(s) 1258
Hsp92I GRCGYC 2 cut(s) 1125, 1285
Hsp92II CATG 4 cut(s) 31, 653, 1172, 1507
HspAI GCGC 1 cut(s) 1513
Ksp22I TGATCA 1 cut(s) 1198
KspAI GTTAAC 1 cut(s) 292
Kzo9I GATC 1 cut(s) 1198
LmnI GCTCC 6 cut(s) 68, 164, 623, 903, 990, 1312
Lsp1109I GCAGC 4 cut(s) 98, 477, 688, 854
LweI GCATC 3 cut(s) 33, 98, 1538
MaeI CTAG 8 cut(s) 179, 185, 528, 749, 816, 1034, 1419, 1520
MaeII ACGT 1 cut(s) 1258
MaeIII GTNAC 5 cut(s) 479, 509, 1091, 1115, 1234
MalI GATC 1 cut(s) 1200
MboI GATC 1 cut(s) 1198
MboII GAAGA 6 cut(s) 284, 452, 580, 720, 1238, 1489
MfeI CAATTG 2 cut(s) 5, 1328
MlyI GAGTC 6 cut(s) 443, 484, 517, 720, 1151, 1173
MmeI TCCRAC 2 cut(s) 1060, 1409
Mph1103I ATGCAT 1 cut(s) 655
MseI TTAA 6 cut(s) 291, 353, 783, 1338, 1451, 1478
MspA1I CMGCKG 3 cut(s) 111, 640, 999
MspI CCGG 1 cut(s) 357
MspR9I CCNGG 3 cut(s) 317, 358, 419
MunI CAATTG 2 cut(s) 5, 1328
Mva1269I GAATGC 1 cut(s) 935
MvaI CCWGG 2 cut(s) 317, 419
MwoI GCNNNNNNNGC 4 cut(s) 108, 876, 963, 1250
NciI CCSGG 1 cut(s) 358
NcoI CCATGG 1 cut(s) 1168
NdeI CATATG 1 cut(s) 18
NdeII GATC 1 cut(s) 1198
NlaIII CATG 4 cut(s) 31, 653, 1172, 1507
NlaIV GGNNCC 2 cut(s) 738, 905
NmeAIII GCCGAG 2 cut(s) 851, 938
NmuCI GTSAC 4 cut(s) 479, 509, 1115, 1234
NsiI ATGCAT 1 cut(s) 655
NspI RCATGY 2 cut(s) 653, 1507
PaeR7I CTCGAG 2 cut(s) 233, 1161
PaqCI CACCTGC 1 cut(s) 241
PctI GAATGC 1 cut(s) 935
PfeI GAWTC 7 cut(s) 124, 146, 283, 767, 788, 809, 1411
PflFI GACNNNGTC 1 cut(s) 446
PkrI GCNGC 5 cut(s) 113, 467, 703, 869, 1048
PleI GAGTC 6 cut(s) 442, 484, 516, 719, 1150, 1172
PpsI GAGTC 6 cut(s) 442, 484, 516, 719, 1150, 1172
Psp1406I AACGTT 1 cut(s) 1258
Psp6I CCWGG 2 cut(s) 315, 417
PspGI CCWGG 2 cut(s) 315, 417
PspN4I GGNNCC 2 cut(s) 738, 905
PspPI GGNCC 1 cut(s) 756
PspXI VCTCGAGB 2 cut(s) 233, 1161
PstI CTGCAG 3 cut(s) 223, 706, 849
PstNI CAGNNNCTG 2 cut(s) 256, 923
PsyI GACNNNGTC 1 cut(s) 446
RsaI GTAC 2 cut(s) 505, 532
RsaNI GTAC 2 cut(s) 504, 531
SaqAI TTAA 6 cut(s) 291, 353, 783, 1338, 1451, 1478
SatI GCNGC 5 cut(s) 112, 466, 702, 868, 1047
Sau3AI GATC 1 cut(s) 1198
Sau96I GGNCC 1 cut(s) 756
SchI GAGTC 6 cut(s) 443, 484, 517, 720, 1151, 1173
ScrFI CCNGG 3 cut(s) 317, 358, 419
SfaNI GCATC 3 cut(s) 33, 98, 1538
SfcI CTRYAG 3 cut(s) 219, 702, 845
Sfr274I CTCGAG 2 cut(s) 233, 1161
SlaI CTCGAG 2 cut(s) 233, 1161
SmlI CTYRAG 2 cut(s) 233, 1161
SmoI CTYRAG 2 cut(s) 233, 1161
SpeI ACTAGT 1 cut(s) 527
SsiI CCGC 6 cut(s) 109, 277, 640, 997, 1047, 1102
SspMI CTAG 8 cut(s) 179, 185, 528, 749, 816, 1034, 1419, 1520
StyD4I CCNGG 3 cut(s) 315, 356, 417
StyI CCWWGG 3 cut(s) 184, 454, 1168
TaaI ACNGT 6 cut(s) 55, 539, 780, 941, 1063, 1240
TaiI ACGT 1 cut(s) 1261
TaqI TCGA 3 cut(s) 234, 1162, 1500
TauI GCSGC 1 cut(s) 1049
TfiI GAWTC 7 cut(s) 124, 146, 283, 767, 788, 809, 1411
Tru1I TTAA 6 cut(s) 291, 353, 783, 1338, 1451, 1478
Tru9I TTAA 6 cut(s) 291, 353, 783, 1338, 1451, 1478
TscAI CASTG 3 cut(s) 228, 601, 1314
TseFI GTSAC 4 cut(s) 479, 509, 1115, 1234
TseI GCWGC 4 cut(s) 111, 465, 701, 867
Tsp45I GTSAC 4 cut(s) 479, 509, 1115, 1234
TspDTI ATGAA 9 cut(s) 5, 684, 759, 801, 801, 897, 942, 1310, 1407
TspRI CASTG 3 cut(s) 228, 601, 1314
Tth111I GACNNNGTC 1 cut(s) 446
XapI RAATTY 4 cut(s) 669, 1267, 1323, 1493
XceI RCATGY 2 cut(s) 653, 1507
XcmI CCANNNNNNNNNTGG 1 cut(s) 959
XhoI CTCGAG 2 cut(s) 233, 1161
XmaJI CCTAGG 1 cut(s) 184
XspI CTAG 8 cut(s) 179, 185, 528, 749, 816, 1034, 1419, 1520
Zsp2I ATGCAT 1 cut(s) 655
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.