Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000052

Physical Location & Seq

Genomic Coordinates Reverse (-)

71065342 .. 71087596

Gene Structure 22255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG444600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2205 bp

ATGACAATGCGAATGCTAGTTCATCATCATATATTGGTATTCACTTTGGTGTTGTCATTTACAGCAGAAGCATCAGATCAGTTAGCACCCATGCCGATAGGAAAACCTGGGTGCAGAACAAATTGCAGCGGTGTTTCGATTCAATACCCTTTCGGAATTGGCCAATCCGGCGGTGAAGATTGCTTTTACGACGTGTGGTTCCAAATCGACTGCAACCAGTCCACCGGGTGGAAGCCCTTCCTGAGGCACACCCAAATGGAGATAGGGAACATTACCATTGCTGAAAATGCAGACAGGGTTCAGGTGTACAGCCCCGTTACTTCCTTGTGCCCTAGTAAGGAAGCAAAGCAAACAAGAGATTTCACGGGCAGCCCTTTCGTCTACTCTCAGAAATTCAATAGATTTACTGCAGTGAGTTGCGGCTTCCTTGCCGTGATTAGCTCCGATGAGTTAATCGTCGGTGGGTGCAGGTCAAGATGTCAAGAGAACGGCTACAGCGTTGACACGCCCTGTGACACTGGTGATAACTGCTGCCAAACTACTATTCCTTCATCTCTCACAGTTATCAATGCTAGCATACAGAGGGATCCAAATGGAAGCGCACCTGGTGGTGCTGGTTGCAAAGACAGGGCGTTTCTGGTTGACCAAGATTGGTTTACTGCTACAAGTTACTATGCCATTGAGAACATGAGCAGCGTTCCTGTGGTGCTGGAATGGACTTTAAACAACGATCAAGCTACTTCTTCATTTCAACCATTTCAATCTTTCCTAGAAGATACCGAGTGGTATTTCACGGATCCAACACCCTTTTGCTCGATTTACCAAAGCAATCGAACAAGAACAACATTCAGTTGTTACTGCAGTTCTGGCTTCGAAGGAAATCCATACCTTCTCGCGCCTTGTCGTGACATTGATGAATGCGCAATTCGGCCCAGTGTGTGCTCACCGGGCAGCAAGTGTGTGAACCATCCTGCATTGTATTATTGTGGGGCCGATAGCCATGTTGTGAAATGGGTCCTCTCAGGTGTCGGCGGGTGCGTTGGGATGTTATTATTACTTACTGGTGCATGGTTGGTATACAAATACCTTCAGAAAAGGAAAAACAAAATACGCAAGGAGTTGTTTTTCAAGAGAAATGGTGGTTTACTATTACAACAACAATTATCGTCGGGTGAAGTTAACGTTGAGAAGATTAAGTTGTTTACATCTGAGGAGTTGGAGAAGTCTACTGACAAATTCAATATTGATAGAATCCTTGGCCAGGGAGGCCAAGGTACTGTTTACAAAGGCATGCTAACAGATGGAAGGATCGTGGCTATTAAGAAGTCTAAAATGGTAAGCGAAGGCCAACTTTCGGATTTCATCAATGAGGTTGTCATTCTTTCCCAAATCAACCACAGAAATATCGTTCAGCTATTGGGTTGTTGTTTAGAGAATGAAGTTCCGCTTCTAGTATATGAGTTCATACCAAACGGAACTCTTTCCAAGTATATCCAAGGTCAGATTGAGGAATTTCCACTTACATGGAAAATACGGTTACGAATTGCAACTGAAATTGCAGGAGCACTTTTCTACCTACACTCTGCAGCTTCATGTCCCATTTTTCACAGAGACATCAAGTCCACAAACATACTTCTAGATGAAAAATACAGAGCAAAACTAGCTGACTTTGGAACTTCAAGATCCGTTGGCATTGACCAAACCCACCTGACCACATGTGTACTTGGTACGTTTGGCTATATGGACCCAGAATACTTTCATTCAAGTCAATTTACAGAGAAAAGTGATGTTTATAGCTTTGGAGTTGTCCTTGTTGAGCTTTTGACTGGACAAAAACCAGTTTCTACTGTAACAAAATCACAAGAAGAATTCAGAAATCTTGCCTCACATTTTATTACTTCAATGCAAGAAGATAGTCTGTGCGAAATTCTCGATGCTCGAGTTCTGAAAGAGGGTTCTGAAACAGATATTAAGGTTGTTGCCAACCTTGCAAAAAGATGTTTGAATGTTAATGGAAGAAATCGCCCTACAATGAGAGAGGTGACAGCAGAGTTGGAGTCCATCCATATCCATATGTTTGCAGAAAAAGCGTCAAATGCTGATCAACGAAGTAAATCGATTGATAGTTGGGATGGAAGTTCAGTAGGATCTAGGATAGCTTCTGATAGGTATGCCGGTGATGAGATCGACTTCATCACTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

EGF_CA GUB_WAK_bind Pkinase Pkinase_Tyr WAK

Protein Analysis

734

Amino Acids

81.67

Weight (kDa)

5.72

Isoelectric Point (pI)

39.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	38 - 96	3.3e-08	Wall-associated receptor kinase galacturonan-binding
Pkinase	PF00069	414 - 682	1e-50	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	414 - 685	2.2e-48	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16090 AT1G16110 AT1G16120 AT1G16130 AT1G16150 AT1G16160 AT1G16260 AT1G16260 AT1G16260 AT1G79670 AT1G79670
fragaria_vesca	FvH4_1g22960 FvH4_3g09860 FvH4_3g10284 FvH4_3g10284 FvH4_3g10540 FvH4_3g24040 FvH4_3g35290 FvH4_3g35290 FvH4_5g06860 FvH4_5g06940 FvH4_6g15920 FvH4_6g15920 FvH4_6g37660 FvH4_6g37670 FvH4_6g37691 FvH4_6g37700 FvH4_6g37710 FvH4_6g38990 FvH4_6g39000 FvH4_6g39020 FvH4_6g39020 FvH4_6g39020 FvH4_6g39021 FvH4_6g39030 FvH4_6g39030 FvH4_6g39031 FvH4_6g39032 FvH4_6g45200 FvH4_6g45200
malus_domestica	MD08G1107900.v1.1 MD09G1145100.v1.1 MD09G1145200.v1.1 MD09G1145300.v1.1 MD09G1145400.v1.1 MD09G1145500.v1.1 MD17G1131600.v1.1 MD17G1131700.v1.1 MD17G1131900.v1.1 MD17G1132000.v1.1
prunus_persica	Prupe.1G188400_v2.0.a1 Prupe.1G188700_v2.0.a1 Prupe.3G180500_v2.0.a1 Prupe.3G180600_v2.0.a1 Prupe.3G180700_v2.0.a1 Prupe.3G181000_v2.0.a1 Prupe.3G181100_v2.0.a1 Prupe.3G181100_v2.0.a1 Prupe.3G181200_v2.0.a1 Prupe.3G181200_v2.0.a1 Prupe.3G181400_v2.0.a1 Prupe.3G181500_v2.0.a1 Prupe.3G181600_v2.0.a1 Prupe.3G181800_v2.0.a1 Prupe.3G181900_v2.0.a1 Prupe.3G182000_v2.0.a1 Prupe.3G182100_v2.0.a1 Prupe.3G182200_v2.0.a1 Prupe.3G182300_v2.0.a1 Prupe.3G182400_v2.0.a1 Prupe.3G182500_v2.0.a1 Prupe.3G182600_v2.0.a1 Prupe.3G182700_v2.0.a1 Prupe.5G051200_v2.0.a1 Prupe.5G051300_v2.0.a1 Prupe.5G051400_v2.0.a1 Prupe.5G051500_v2.0.a1 Prupe.5G051600_v2.0.a1 Prupe.5G051600_v2.0.a1 Prupe.5G051800_v2.0.a1
pyrus_communis	pycom09g06470 pycom09g06490 pycom09g06510 pycom09g06520 pycom09g06570 pycom09g06580 pycom17g12440 pycom17g12450 pycom17g12530
rosa_chinensis	RchiOBHm_Chr2g0117481 RchiOBHm_Chr2g0128321 RchiOBHm_Chr2g0128331 RchiOBHm_Chr2g0128581 RchiOBHm_Chr2g0128591 RchiOBHm_Chr2g0150651 RchiOBHm_Chr2g0150661 RchiOBHm_Chr2g0150741 RchiOBHm_Chr2g0150781 RchiOBHm_Chr2g0152581 RchiOBHm_Chr2g0152591 RchiOBHm_Chr2g0152641 RchiOBHm_Chr2g0152661 RchiOBHm_Chr2g0152711 RchiOBHm_Chr2g0152731 RchiOBHm_Chr2g0152871 RchiOBHm_Chr2g0152881 RchiOBHm_Chr2g0152901 RchiOBHm_Chr2g0152921 RchiOBHm_Chr2g0152931 RchiOBHm_Chr2g0152941 RchiOBHm_Chr3g0469621 RchiOBHm_Chr3g0469631 RchiOBHm_Chr5g0015591 RchiOBHm_Chr5g0046061 RchiOBHm_Chr5g0047341 RchiOBHm_Chr5g0063341 RchiOBHm_Chr5g0063351 RchiOBHm_Chr6g0264381 RchiOBHm_Chr7g0191741 RchiOBHm_Chr7g0210751 RchiOBHm_Chr7g0221871 RchiOBHm_Chr7g0225671 RchiOBHm_Chr7g0225891 RchiOBHm_Chr7g0225901 RchiOBHm_Chr7g0225961 RchiOBHm_Chr7g0225971 RchiOBHm_Chr7g0234031 RchiOBHm_Chr7g0234041
rosa_laevigata	RLG00000001780 RLG00000001784 RLG00000001785 RLG00000001788 RLG00000001789 RLG00000001793 RLG00000001794 RLG00000002941 RLG00000004430 RLG00000014259 RLG00000018349 RLG00000019001 RLG00000019005 RLG00000019011 RLG00000020503 RLG00000020507 RLG00000020648 RLG00000020649 RLG00000020651 RLG00000020652 RLG00000020653 RLG00000020655 RLG00000020656 RLG00000020657 RLG00000023668 RLG00000024331 RLG00000034386 RLG00000035624 RLG00000035625
rosa_multiflora	Rmu_co8401977.1_g000001 Rmu_co8409989.1_g000001 Rmu_co8432067.1_g000001 Rmu_co8491011.1_g000001 Rmu_sc0000580.1_g000085 Rmu_sc0000740.1_g000012 Rmu_sc0000740.1_g000014 Rmu_sc0000837.1_g000041 Rmu_sc0000837.1_g000077 Rmu_sc0001552.1_g000008 Rmu_sc0001617.1_g000001 Rmu_sc0002082.1_g000006 Rmu_sc0002082.1_g000007 Rmu_sc0002082.1_g000022 Rmu_sc0002989.1_g000013 Rmu_sc0003064.1_g000011 Rmu_sc0003127.1_g000003 Rmu_sc0003127.1_g000014 Rmu_sc0003127.1_g000028 Rmu_sc0003127.1_g000032 Rmu_sc0003127.1_g000034 Rmu_sc0003127.1_g000035 Rmu_sc0003127.1_g000054 Rmu_sc0003127.1_g000055 Rmu_sc0003465.1_g000034 Rmu_sc0005223.1_g000021 Rmu_sc0005302.1_g000004 Rmu_sc0005378.1_g000005 Rmu_sc0005378.1_g000007 Rmu_sc0005378.1_g000017 Rmu_sc0005378.1_g000034 Rmu_sc0005378.1_g000039 Rmu_sc0005378.1_g000042 Rmu_sc0005378.1_g000056 Rmu_sc0005378.1_g000057 Rmu_sc0005378.1_g000058 Rmu_sc0006483.1_g000013 Rmu_sc0008775.1_g000006 Rmu_sc0008775.1_g000011 Rmu_sc0009104.1_g000010 Rmu_sc0009104.1_g000011 Rmu_sc0009104.1_g000020 Rmu_sc0010960.1_g000006 Rmu_sc0011737.1_g000002 Rmu_sc0011737.1_g000004 Rmu_sc0012875.1_g000003 Rmu_sc0013122.1_g000002 Rmu_sc0018944.1_g000002 Rmu_sc0020155.1_g000001 Rmu_sc0020156.1_g000001 Rmu_ssc0000233.1_g000012 Rmu_ssc0000233.1_g000013 Rmu_ssc0000233.1_g000030 Rmu_ssc0000233.1_g000044 Rmu_ssc0000233.1_g000047 Rmu_ssc0000233.1_g000052 Rmu_ssc0000233.1_g000054 Rmu_ssc0000233.1_g000055 Rmu_ssc0000233.1_g000080 Rmu_ssc0000233.1_g000082 Rmu_ssc0000233.1_g000087 Rmu_ssc0000233.1_g000094 Rmu_ssc0000480.1_g000060 Rmu_ssc0000480.1_g000061
rosa_roxburghii	Rroxscaffold_1G00017360 Rroxscaffold_1G00017370 Rroxscaffold_1G00060880 Rroxscaffold_2G00095370 Rroxscaffold_2G00095420 Rroxscaffold_2G00095450 Rroxscaffold_2G00095460 Rroxscaffold_2G00095490 Rroxscaffold_2G00095560 Rroxscaffold_2G00095570 Rroxscaffold_2G00096960 Rroxscaffold_2G00097010 Rroxscaffold_2G00126500 Rroxscaffold_3G00233390 Rroxscaffold_3G00233580 Rroxscaffold_3G00263590 Rroxscaffold_6G00411660
rosa_rugosa	Rorug01G0142700.1 Rorug01G0148600.1 Rorug02G0212800 Rorug02G0422400 Rorug02G0434700 Rorug02G0434800 Rorug02G0435000 Rorug02G0435200 Rorug02G0435300 Rorug02G0435400 Rorug02G0435700 Rorug02G0435800 Rorug02G0436200 Rorug02G0436300 Rorug03G0102800 Rorug04G0123600 Rorug04G0123700 Rorug04G0123800 Rorug04G0124000 Rorug04G0124000 Rorug04G0124500 Rorug04G0124700 Rorug04G0124900 Rorug05G0028600.1 Rorug05G0356100 Rorug05G0356800 Rorug06G0011900 Rorug07G0092900 Rorug07G0122800 Rorug07G0232500 Rorug07G0232600 Rorug07G0232700
rosa_samantha	Rh1AG408900 Rh2AG332700 Rh2AG333400 Rh2AG482100 Rh2AG482200 Rh2AG482500 Rh2AG496000 Rh2AG496100 Rh2AG496200 Rh2AG496300 Rh2AG497100 Rh2AG497200 Rh2AG497400 Rh2BG280300 Rh2BG340500 Rh2BG494400 Rh2BG494900 Rh2BG507800 Rh2BG507900 Rh2BG508000 Rh2BG508100 Rh2BG508300 Rh2BG508500 Rh2BG508700 Rh2BG509200 Rh2BG512700 Rh2CG271900 Rh2CG319100 Rh2CG319400 Rh2CG357200 Rh2CG468400 Rh2CG468500 Rh2CG468800 Rh2CG482200 Rh2CG482300 Rh2CG482400 Rh2CG482500 Rh2CG483200 Rh2CG483300 Rh2CG483500 Rh2CG483600 Rh2DG294600 Rh2DG357100 Rh2DG357700 Rh2DG503400 Rh2DG504300 Rh2DG504900 Rh2DG505500 Rh2DG505900 Rh2DG519000 Rh2DG519100 Rh2DG519300 Rh2DG519400 Rh2DG520000 Rh2DG520200 Rh2DG520500 Rh2DG521000 Rh2DG524300 Rh3AG152400 Rh3AG334400 Rh3BG176100 Rh3CG167200 Rh3DG199400 Rh3DG199500 Rh5AG415900 Rh5BG430800 Rh5CG454300 Rh5DG444600 Rh6AG247500 Rh6AG247700 Rh7AG120600 Rh7AG369800 Rh7AG370800 Rh7AG468300 Rh7BG366400 Rh7CG125200 Rh7CG388700 Rh7CG389400 Rh7CG459600 Rh7DG123300 Rh7DG123400 Rh7DG123800 Rh7DG123900 Rh7DG377200
rosa_wichuraiana	Rw0G004850 Rw0G004870 Rw0G013120 Rw1G013520 Rw2G026850 Rw2G026910 Rw2G027120 Rw2G039340 Rw2G039360 Rw2G039410 Rw2G039420 Rw2G039440 Rw2G039520 Rw2G040810 Rw2G040830 Rw2G040850 Rw2G040860 Rw2G040880 Rw2G041210 Rw2G041220 Rw2G041240 Rw2G041250 Rw3G014370 Rw5G010520 Rw5G039070 Rw6G021410 Rw6G021420 Rw7G010280 Rw7G021780 Rw7G031820

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	922
Acc36I	ACCTGC	1 cut(s)	459
AccB7I	CCANNNNNTGG	1 cut(s)	228
AccI	GTMKAC	3 cut(s)	381, 1077, 1226
AccII	CGCG	1 cut(s)	896
AciI	CCGC	5 cut(s)	129, 171, 420, 1032, 1445
AclI	AACGTT	1 cut(s)	1182
AclWI	GGATC	7 cut(s)	581, 594, 791, 804, 1316, 1677, 2155
AcoI	YGGCCR	2 cut(s)	160, 1258
AcsI	RAATTY	5 cut(s)	392, 1235, 1511, 1868, 1926
AcuI	CTGAAG	1 cut(s)	1073
AdeI	CACNNNGTG	2 cut(s)	228, 608
AfaI	GTAC	4 cut(s)	308, 1276, 1722, 1729
AfiI	CCNNNNNNNGG	5 cut(s)	228, 243, 337, 1261, 1354
AflIII	ACRYGT	2 cut(s)	192, 1715
AhdI	GACNNNNNGTC	1 cut(s)	1618
AjiI	CACGTC	1 cut(s)	193
AjnI	CCWGG	3 cut(s)	106, 604, 1260
AjuI	GAANNNNNNNTTGG	2 cut(s)	528, 560
AleI	CACNNNNGTG	1 cut(s)	47
AluBI	AGCT	8 cut(s)	441, 737, 1414, 1589, 1664, 1797, 1819, 2159
AluI	AGCT	8 cut(s)	441, 737, 1414, 1589, 1664, 1797, 1819, 2159
Alw21I	GWGCWC	2 cut(s)	944, 1567
Alw26I	GTCTC	1 cut(s)	1605
AlwI	GGATC	7 cut(s)	581, 594, 791, 804, 1316, 1677, 2155
Ama87I	CYCGRG	1 cut(s)	1938
AoxI	GGCC	6 cut(s)	160, 929, 990, 1258, 1267, 1345
ApeKI	GCWGC	6 cut(s)	126, 369, 531, 693, 951, 1586
ApoI	RAATTY	5 cut(s)	392, 1235, 1511, 1868, 1926
Asp700I	GAANNNNTTC	3 cut(s)	236, 1480, 1755
AspLEI	GCGC	3 cut(s)	602, 898, 923
AspS9I	GGNCC	4 cut(s)	930, 990, 1015, 1744
AsuC2I	CCSGG	2 cut(s)	226, 948
AsuHPI	GGTGA	6 cut(s)	185, 533, 936, 1184, 2053, 2189
AsuII	TTCGAA	1 cut(s)	873
AsuNHI	GCTAGC	1 cut(s)	572
AvaI	CYCGRG	1 cut(s)	1938
AvaII	GGWCC	2 cut(s)	1015, 1744
AxyI	CCTNAGG	1 cut(s)	242
BaeGI	GKGCMC	1 cut(s)	332
BalI	TGGCCA	2 cut(s)	162, 1260
BamHI	GGATCC	2 cut(s)	586, 796
Bbv12I	GWGCWC	2 cut(s)	944, 1567
BbvI	GCAGC	6 cut(s)	138, 381, 518, 705, 963, 1598
BccI	CCATC	4 cut(s)	975, 1295, 2069, 2126
BceAI	ACGGC	2 cut(s)	416, 505
BcgI	CGANNNNNNTGC	2 cut(s)	358, 392
BciT130I	CCWGG	3 cut(s)	108, 606, 1262
BclI	TGATCA	1 cut(s)	2101
BcnI	CCSGG	2 cut(s)	226, 948
BcoDI	GTCTC	1 cut(s)	1605
BfaI	CTAG	8 cut(s)	17, 333, 573, 770, 1451, 1637, 1661, 2151
BfmI	CTRYAG	4 cut(s)	408, 493, 859, 1584
BfuAI	ACCTGC	1 cut(s)	459
BglI	GCCNNNNNGGC	2 cut(s)	168, 1266
BisI	GCNGC	7 cut(s)	127, 370, 421, 532, 694, 952, 1587
BlsI	GCNGC	7 cut(s)	128, 371, 422, 533, 695, 953, 1588
Bme1390I	CCNGG	5 cut(s)	108, 226, 606, 948, 1262
Bme18I	GGWCC	2 cut(s)	1015, 1744
BmeRI	GACNNNNNGTC	1 cut(s)	1618
BmeT110I	CYCGRG	1 cut(s)	1938
BmgBI	CACGTC	1 cut(s)	193
BmgT120I	GGNCC	4 cut(s)	930, 990, 1015, 1744
BmiI	GGNNCC	6 cut(s)	200, 588, 798, 991, 1016, 1746
BmrFI	CCNGG	5 cut(s)	108, 226, 606, 948, 1262
BmrI	ACTGGG	1 cut(s)	927
BmsI	GCATC	2 cut(s)	80, 1924
BmtI	GCTAGC	1 cut(s)	576
BmuI	ACTGGG	1 cut(s)	927
Bpu14I	TTCGAA	1 cut(s)	873
BpuMI	CCSGG	2 cut(s)	226, 948
Bsa29I	ATCGAT	1 cut(s)	2117
BsaJI	CCNNGG	5 cut(s)	107, 1255, 1261, 1270, 1495
Bsc4I	CCNNNNNNNGG	5 cut(s)	228, 243, 337, 1261, 1354
Bse118I	RCCGGY	1 cut(s)	2174
Bse1I	ACTGG	6 cut(s)	217, 523, 933, 1066, 1831, 1838
Bse21I	CCTNAGG	1 cut(s)	242
Bse3DI	GCAATG	1 cut(s)	276
BseBI	CCWGG	3 cut(s)	108, 606, 1262
BseCI	ATCGAT	1 cut(s)	2117
BseDI	CCNNGG	5 cut(s)	107, 1255, 1261, 1270, 1495
BseGI	GGATG	4 cut(s)	967, 1050, 2061, 2137
BseLI	CCNNNNNNNGG	5 cut(s)	228, 243, 337, 1261, 1354
BseMI	GCAATG	1 cut(s)	276
BseMII	CTCAG	4 cut(s)	233, 401, 1035, 1200
BseNI	ACTGG	6 cut(s)	217, 523, 933, 1066, 1831, 1838
BseRI	GAGGAG	1 cut(s)	1226
BseSI	GKGCMC	1 cut(s)	332
BseXI	GCAGC	6 cut(s)	138, 381, 518, 705, 963, 1598
BsgI	GTGCAG	2 cut(s)	133, 487
Bsh1236I	CGCG	1 cut(s)	896
BshFI	GGCC	6 cut(s)	162, 931, 992, 1260, 1269, 1347
BshVI	ATCGAT	1 cut(s)	2117
BsiHKAI	GWGCWC	2 cut(s)	944, 1567
BsiHKCI	CYCGRG	1 cut(s)	1938
BsiSI	CCGG	4 cut(s)	168, 225, 947, 2175
BslFI	GGGAC	1 cut(s)	1581
BslI	CCNNNNNNNGG	5 cut(s)	228, 243, 337, 1261, 1354
BsmAI	GTCTC	1 cut(s)	1605
BsmFI	GGGAC	1 cut(s)	1581
BsmI	GAATGC	2 cut(s)	18, 923
BsnI	GGCC	6 cut(s)	162, 931, 992, 1260, 1269, 1347
BsoBI	CYCGRG	1 cut(s)	1938
Bsp119I	TTCGAA	1 cut(s)	873
Bsp1286I	GDGCHC	3 cut(s)	332, 944, 1567
Bsp1407I	TGTACA	1 cut(s)	306
Bsp143I	GATC	9 cut(s)	76, 586, 730, 796, 1308, 1682, 2101, 2147, 2184
BspACI	CCGC	5 cut(s)	129, 171, 420, 1032, 1445
BspANI	GGCC	6 cut(s)	162, 931, 992, 1260, 1269, 1347
BspCNI	CTCAG	4 cut(s)	234, 400, 1034, 1201
BspDI	ATCGAT	1 cut(s)	2117
BspFNI	CGCG	1 cut(s)	896
BspLI	GGNNCC	6 cut(s)	200, 588, 798, 991, 1016, 1746
BspMAI	CTGCAG	3 cut(s)	412, 863, 1588
BspMI	ACCTGC	1 cut(s)	459
BspOI	GCTAGC	1 cut(s)	576
BspPI	GGATC	7 cut(s)	581, 594, 791, 804, 1316, 1677, 2155
BspT104I	TTCGAA	1 cut(s)	873
BsrDI	GCAATG	1 cut(s)	276
BsrFI	RCCGGY	1 cut(s)	2174
BsrGI	TGTACA	1 cut(s)	306
BsrI	ACTGG	6 cut(s)	217, 523, 933, 1066, 1831, 1838
BssAI	RCCGGY	1 cut(s)	2174
BssECI	CCNNGG	5 cut(s)	107, 1255, 1261, 1270, 1495
BssMI	GATC	9 cut(s)	76, 586, 730, 796, 1308, 1682, 2101, 2147, 2184
BssNAI	GTATAC	1 cut(s)	1078
BssT1I	CCWWGG	3 cut(s)	1255, 1270, 1495
Bst1107I	GTATAC	1 cut(s)	1078
Bst2UI	CCWGG	3 cut(s)	108, 606, 1262
Bst4CI	ACNGT	4 cut(s)	562, 1279, 1536, 1849
BstAUI	TGTACA	1 cut(s)	306
BstBI	TTCGAA	1 cut(s)	873
BstC8I	GCNNGC	2 cut(s)	574, 1292
BstDEI	CTNAG	4 cut(s)	242, 387, 1021, 1209
BstENI	CCTNNNNNAGG	2 cut(s)	241, 1259
BstF5I	GGATG	4 cut(s)	967, 1050, 2061, 2137
BstFNI	CGCG	1 cut(s)	896
BstHHI	GCGC	3 cut(s)	602, 898, 923
BstKTI	GATC	9 cut(s)	79, 589, 733, 799, 1311, 1685, 2104, 2150, 2187
BstMAI	GTCTC	1 cut(s)	1605
BstMBI	GATC	9 cut(s)	76, 586, 730, 796, 1308, 1682, 2101, 2147, 2184
BstMWI	GCNNNNNNNGC	9 cut(s)	168, 287, 867, 948, 1266, 1661, 1988, 2087, 2096
BstNI	CCWGG	3 cut(s)	108, 606, 1262
BstNSI	RCATGY	2 cut(s)	1294, 1719
BstSCI	CCNGG	5 cut(s)	106, 224, 604, 946, 1260
BstSFI	CTRYAG	4 cut(s)	408, 493, 859, 1584
BstSLI	GKGCMC	1 cut(s)	332
BstUI	CGCG	1 cut(s)	896
BstV1I	GCAGC	6 cut(s)	138, 381, 518, 705, 963, 1598
BstX2I	RGATCY	4 cut(s)	586, 796, 1682, 2147
BstXI	CCANNNNNNTGG	1 cut(s)	1524
BstYI	RGATCY	4 cut(s)	586, 796, 1682, 2147
BstZ17I	GTATAC	1 cut(s)	1078
Bsu15I	ATCGAT	1 cut(s)	2117
Bsu36I	CCTNAGG	1 cut(s)	242
BsuRI	GGCC	6 cut(s)	162, 931, 992, 1260, 1269, 1347
BsuTUI	ATCGAT	1 cut(s)	2117
BtrI	CACGTC	1 cut(s)	193
BtsCI	GGATG	4 cut(s)	967, 1050, 2061, 2137
BtsI	GCAGTG	1 cut(s)	417
BtsIMutI	CAGTG	3 cut(s)	417, 516, 940
BveI	ACCTGC	1 cut(s)	459
Cac8I	GCNNGC	2 cut(s)	574, 1292
CfoI	GCGC	3 cut(s)	602, 898, 923
Cfr10I	RCCGGY	1 cut(s)	2174
Cfr13I	GGNCC	4 cut(s)	930, 990, 1015, 1744
ClaI	ATCGAT	1 cut(s)	2117
CseI	GACGC	1 cut(s)	2079
CsiI	ACCWGGT	1 cut(s)	604
Csp6I	GTAC	4 cut(s)	307, 1275, 1721, 1728
CviAII	CATG	8 cut(s)	91, 688, 1001, 1068, 1291, 1524, 1593, 1716
CviQI	GTAC	4 cut(s)	307, 1275, 1721, 1728
DdeI	CTNAG	4 cut(s)	242, 387, 1021, 1209
DpnI	GATC	9 cut(s)	78, 588, 732, 798, 1310, 1684, 2103, 2149, 2186
DpnII	GATC	9 cut(s)	76, 586, 730, 796, 1308, 1682, 2101, 2147, 2184
DraI	TTTAAA	1 cut(s)	723
DraIII	CACNNNGTG	2 cut(s)	228, 608
DriI	GACNNNNNGTC	1 cut(s)	1618
EaeI	YGGCCR	2 cut(s)	160, 1258
Eam1105I	GACNNNNNGTC	1 cut(s)	1618
Eco130I	CCWWGG	3 cut(s)	1255, 1270, 1495
Eco47I	GGWCC	2 cut(s)	1015, 1744
Eco57I	CTGAAG	1 cut(s)	1073
Eco81I	CCTNAGG	1 cut(s)	242
Eco88I	CYCGRG	1 cut(s)	1938
EcoNI	CCTNNNNNAGG	2 cut(s)	241, 1259
EcoO109I	RGGNCCY	1 cut(s)	1015
EcoRI	GAATTC	1 cut(s)	1868
EcoRII	CCWGG	3 cut(s)	106, 604, 1260
EcoT14I	CCWWGG	3 cut(s)	1255, 1270, 1495
ErhI	CCWWGG	3 cut(s)	1255, 1270, 1495
FaeI	CATG	8 cut(s)	94, 691, 1004, 1071, 1294, 1527, 1596, 1719
FalI	AAGNNNNNCTT	4 cut(s)	1335, 1367, 1431, 1463
FaqI	GGGAC	1 cut(s)	1581
FatI	CATG	8 cut(s)	90, 687, 1000, 1067, 1290, 1523, 1592, 1715
FauI	CCCGC	1 cut(s)	1025
FauNDI	CATATG	1 cut(s)	2073
FbaI	TGATCA	1 cut(s)	2101
FblI	GTMKAC	3 cut(s)	381, 1077, 1226
Fnu4HI	GCNGC	7 cut(s)	127, 370, 421, 532, 694, 952, 1587
FokI	GGATG	4 cut(s)	954, 1057, 2048, 2144
Fsp4HI	GCNGC	7 cut(s)	127, 370, 421, 532, 694, 952, 1587
FspBI	CTAG	8 cut(s)	17, 333, 573, 770, 1451, 1637, 1661, 2151
FspI	TGCGCA	1 cut(s)	922
GlaI	GCGC	3 cut(s)	601, 897, 922
GluI	GCNGC	7 cut(s)	127, 370, 421, 532, 694, 952, 1587
HaeIII	GGCC	6 cut(s)	162, 931, 992, 1260, 1269, 1347
HapII	CCGG	4 cut(s)	168, 225, 947, 2175
HgaI	GACGC	1 cut(s)	2079
HhaI	GCGC	3 cut(s)	602, 898, 923
Hin1II	CATG	8 cut(s)	94, 691, 1004, 1071, 1294, 1527, 1596, 1719
Hin6I	GCGC	3 cut(s)	600, 896, 921
HinP1I	GCGC	3 cut(s)	600, 896, 921
HincII	GTYRAC	3 cut(s)	502, 643, 1180
HindII	GTYRAC	3 cut(s)	502, 643, 1180
HinfI	GANTC	3 cut(s)	139, 1251, 2057
HpaI	GTTAAC	1 cut(s)	1180
HpaII	CCGG	4 cut(s)	168, 225, 947, 2175
HphI	GGTGA	6 cut(s)	185, 533, 936, 1184, 2053, 2189
Hpy188III	TCNNGA	8 cut(s)	241, 474, 482, 905, 1129, 1637, 1680, 1931
Hpy99I	CGWCG	3 cut(s)	194, 461, 1171
HpyAV	CCTTC	7 cut(s)	247, 558, 869, 899, 1097, 1299, 1337
HpyCH4III	ACNGT	4 cut(s)	562, 1279, 1536, 1849
HpyCH4IV	ACGT	3 cut(s)	192, 1182, 1730
HpyF10VI	GCNNNNNNNGC	9 cut(s)	168, 287, 867, 948, 1266, 1661, 1988, 2087, 2096
HpyF3I	CTNAG	4 cut(s)	242, 387, 1021, 1209
HpySE526I	ACGT	3 cut(s)	192, 1182, 1730
Hsp92II	CATG	8 cut(s)	94, 691, 1004, 1071, 1294, 1527, 1596, 1719
HspAI	GCGC	3 cut(s)	600, 896, 921
Ksp22I	TGATCA	1 cut(s)	2101
KspAI	GTTAAC	1 cut(s)	1180
Kzo9I	GATC	9 cut(s)	76, 586, 730, 796, 1308, 1682, 2101, 2147, 2184
LmnI	GCTCC	2 cut(s)	446, 1562
Lsp1109I	GCAGC	6 cut(s)	138, 381, 518, 705, 963, 1598
LweI	GCATC	2 cut(s)	80, 1924
MabI	ACCWGGT	1 cut(s)	604
MaeI	CTAG	8 cut(s)	17, 333, 573, 770, 1451, 1637, 1661, 2151
MaeII	ACGT	3 cut(s)	192, 1182, 1730
MaeIII	GTNAC	8 cut(s)	316, 512, 668, 854, 905, 1536, 1849, 2041
MalI	GATC	9 cut(s)	78, 588, 732, 798, 1310, 1684, 2103, 2149, 2186
MboI	GATC	9 cut(s)	76, 586, 730, 796, 1308, 1682, 2101, 2147, 2184
MboII	GAAGA	7 cut(s)	188, 735, 785, 1201, 1877, 1922, 2028
MflI	RGATCY	4 cut(s)	586, 796, 1682, 2147
MhlI	GDGCHC	3 cut(s)	332, 944, 1567
MlsI	TGGCCA	2 cut(s)	162, 1260
MluNI	TGGCCA	2 cut(s)	162, 1260
MlyI	GAGTC	1 cut(s)	2066
MmeI	TCCRAC	3 cut(s)	824, 1197, 2034
Mox20I	TGGCCA	2 cut(s)	162, 1260
MroXI	GAANNNNTTC	3 cut(s)	236, 1480, 1755
MscI	TGGCCA	2 cut(s)	162, 1260
MseI	TTAA	7 cut(s)	452, 722, 1179, 1194, 1320, 1971, 2010
MslI	CAYNNNNRTG	3 cut(s)	47, 254, 1522
Msp20I	TGGCCA	2 cut(s)	162, 1260
MspA1I	CMGCKG	1 cut(s)	129
MspI	CCGG	4 cut(s)	168, 225, 947, 2175
MspR9I	CCNGG	5 cut(s)	108, 226, 606, 948, 1262
Mva1269I	GAATGC	2 cut(s)	18, 923
MvaI	CCWGG	3 cut(s)	108, 606, 1262
MvnI	CGCG	1 cut(s)	896
MwoI	GCNNNNNNNGC	9 cut(s)	168, 287, 867, 948, 1266, 1661, 1988, 2087, 2096
NciI	CCSGG	2 cut(s)	226, 948
NdeI	CATATG	1 cut(s)	2073
NdeII	GATC	9 cut(s)	76, 586, 730, 796, 1308, 1682, 2101, 2147, 2184
NheI	GCTAGC	1 cut(s)	572
NlaIII	CATG	8 cut(s)	94, 691, 1004, 1071, 1294, 1527, 1596, 1719
NlaIV	GGNNCC	6 cut(s)	200, 588, 798, 991, 1016, 1746
NmuCI	GTSAC	3 cut(s)	512, 905, 2041
NsbI	TGCGCA	1 cut(s)	922
NspI	RCATGY	2 cut(s)	1294, 1719
NspV	TTCGAA	1 cut(s)	873
OliI	CACNNNNGTG	1 cut(s)	47
PaeI	GCATGC	1 cut(s)	1294
PaeR7I	CTCGAG	1 cut(s)	1938
PciI	ACATGT	1 cut(s)	1715
PcsI	WCGNNNNNNNCGW	2 cut(s)	495, 1035
PctI	GAATGC	2 cut(s)	18, 923
PdmI	GAANNNNTTC	3 cut(s)	236, 1480, 1755
PfeI	GAWTC	2 cut(s)	139, 1251
PflMI	CCANNNNNTGG	1 cut(s)	228
PkrI	GCNGC	7 cut(s)	128, 371, 422, 533, 695, 953, 1588
PleI	GAGTC	1 cut(s)	2065
PpsI	GAGTC	1 cut(s)	2065
PpuMI	RGGWCCY	1 cut(s)	1015
PscI	ACATGT	1 cut(s)	1715
Psp1406I	AACGTT	1 cut(s)	1182
Psp5II	RGGWCCY	1 cut(s)	1015
Psp6I	CCWGG	3 cut(s)	106, 604, 1260
PspGI	CCWGG	3 cut(s)	106, 604, 1260
PspN4I	GGNNCC	6 cut(s)	200, 588, 798, 991, 1016, 1746
PspPI	GGNCC	4 cut(s)	930, 990, 1015, 1744
PspPPI	RGGWCCY	1 cut(s)	1015
PspXI	VCTCGAGB	1 cut(s)	1938
PstI	CTGCAG	3 cut(s)	412, 863, 1588
PsuI	RGATCY	4 cut(s)	586, 796, 1682, 2147
RsaI	GTAC	4 cut(s)	308, 1276, 1722, 1729
RsaNI	GTAC	4 cut(s)	307, 1275, 1721, 1728
RseI	CAYNNNNRTG	3 cut(s)	47, 254, 1522
SaqAI	TTAA	7 cut(s)	452, 722, 1179, 1194, 1320, 1971, 2010
SatI	GCNGC	7 cut(s)	127, 370, 421, 532, 694, 952, 1587
Sau3AI	GATC	9 cut(s)	76, 586, 730, 796, 1308, 1682, 2101, 2147, 2184
Sau96I	GGNCC	4 cut(s)	930, 990, 1015, 1744
SchI	GAGTC	1 cut(s)	2066
ScrFI	CCNGG	5 cut(s)	108, 226, 606, 948, 1262
SduI	GDGCHC	3 cut(s)	332, 944, 1567
SexAI	ACCWGGT	1 cut(s)	604
SfaNI	GCATC	2 cut(s)	80, 1924
SfcI	CTRYAG	4 cut(s)	408, 493, 859, 1584
SfiI	GGCCNNNNNGGCC	1 cut(s)	1266
Sfr274I	CTCGAG	1 cut(s)	1938
SfuI	TTCGAA	1 cut(s)	873
SinI	GGWCC	2 cut(s)	1015, 1744
SlaI	CTCGAG	1 cut(s)	1938
SmiMI	CAYNNNNRTG	3 cut(s)	47, 254, 1522
SmlI	CTYRAG	1 cut(s)	1938
SmoI	CTYRAG	1 cut(s)	1938
SphI	GCATGC	1 cut(s)	1294
SsiI	CCGC	5 cut(s)	129, 171, 420, 1032, 1445
SspI	AATATT	1 cut(s)	1243
SspMI	CTAG	8 cut(s)	17, 333, 573, 770, 1451, 1637, 1661, 2151
StyD4I	CCNGG	5 cut(s)	106, 224, 604, 946, 1260
StyI	CCWWGG	3 cut(s)	1255, 1270, 1495
TaaI	ACNGT	4 cut(s)	562, 1279, 1536, 1849
TaiI	ACGT	3 cut(s)	195, 1185, 1733
TaqI	TCGA	9 cut(s)	137, 207, 815, 832, 873, 1932, 1939, 2117, 2187
TatI	WGTACW	2 cut(s)	306, 1720
TauI	GCSGC	1 cut(s)	423
TfiI	GAWTC	2 cut(s)	139, 1251
Tru1I	TTAA	7 cut(s)	452, 722, 1179, 1194, 1320, 1971, 2010
Tru9I	TTAA	7 cut(s)	452, 722, 1179, 1194, 1320, 1971, 2010
TscAI	CASTG	3 cut(s)	417, 523, 940
TseFI	GTSAC	3 cut(s)	512, 905, 2041
TseI	GCWGC	6 cut(s)	126, 369, 531, 693, 951, 1586
Tsp45I	GTSAC	3 cut(s)	512, 905, 2041
TspGWI	ACGGA	3 cut(s)	809, 1488, 1675
TspRI	CASTG	3 cut(s)	417, 523, 940
Van91I	CCANNNNNTGG	1 cut(s)	228
VpaK11BI	GGWCC	2 cut(s)	1015, 1744
XagI	CCTNNNNNAGG	2 cut(s)	241, 1259
XapI	RAATTY	5 cut(s)	392, 1235, 1511, 1868, 1926
XbaI	TCTAGA	1 cut(s)	1636
XceI	RCATGY	2 cut(s)	1294, 1719
XhoI	CTCGAG	1 cut(s)	1938
XmiI	GTMKAC	3 cut(s)	381, 1077, 1226
XmnI	GAANNNNTTC	3 cut(s)	236, 1480, 1755
XspI	CTAG	8 cut(s)	17, 333, 573, 770, 1451, 1637, 1661, 2151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.