Rmu_ssc0000233.1_g000054

wall-associated receptor kinase-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000233.1
Physical Location & Seq
Reverse (-)
239494 .. 241167
1674 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000233.1_g000054.1.cds

Sequence Viewer

Length: 570 bp
atgccatcggtcaaccaagaaaacatacaagtaacgacgatcgactgcaacgaggggaagcctttcttgaggcgtaccaaattggaggtgctgagtatatctaccgaaggatggcttcaggtgtccagccctgtcacattcttctgcgagggaaataatagtagccaagcggcggatttaagcgacagccctttcgtctactctcagggcttcaacatattcactgcagtcagttgcaattcctttgtctcgttgagttccgcaaataactctgttgttggcggatgcatgtcagtgtgtgatcaaacttatgaatacccgagttgcgatatcggtaataactgttgtcagtctagaattcctccaaacctcactgttattgatgctaccttatctgagaaaactaaaaattgcaataattttgccttcctggttgacaaagattggtttgaggacactacttcatcatcaacaatttctggctttacagctgccgtgaagagtatgcgcaaggttcctgtgggctgtggcactagactggcgcataaacaacagcactcggccatttga

Protein Analysis

189

Amino Acids

20.51

Weight (kDa)

5.1

Isoelectric Point (pI)

55.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000052)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16090 AT1G16110 AT1G16120 AT1G16130 AT1G16150 AT1G16160 AT1G16260 AT1G16260 AT1G16260 AT1G79670 AT1G79670
fragaria_vesca FvH4_1g22960 FvH4_3g09860 FvH4_3g10284 FvH4_3g10284 FvH4_3g10540 FvH4_3g24040 FvH4_3g35290 FvH4_3g35290 FvH4_5g06860 FvH4_5g06940 FvH4_6g15920 FvH4_6g15920 FvH4_6g37660 FvH4_6g37670 FvH4_6g37691 FvH4_6g37700 FvH4_6g37710 FvH4_6g38990 FvH4_6g39000 FvH4_6g39020 FvH4_6g39020 FvH4_6g39020 FvH4_6g39021 FvH4_6g39030 FvH4_6g39030 FvH4_6g39031 FvH4_6g39032 FvH4_6g45200 FvH4_6g45200
malus_domestica MD08G1107900.v1.1 MD09G1145100.v1.1 MD09G1145200.v1.1 MD09G1145300.v1.1 MD09G1145400.v1.1 MD09G1145500.v1.1 MD17G1131600.v1.1 MD17G1131700.v1.1 MD17G1131900.v1.1 MD17G1132000.v1.1
prunus_persica Prupe.1G188400_v2.0.a1 Prupe.1G188700_v2.0.a1 Prupe.3G180500_v2.0.a1 Prupe.3G180600_v2.0.a1 Prupe.3G180700_v2.0.a1 Prupe.3G181000_v2.0.a1 Prupe.3G181100_v2.0.a1 Prupe.3G181100_v2.0.a1 Prupe.3G181200_v2.0.a1 Prupe.3G181200_v2.0.a1 Prupe.3G181400_v2.0.a1 Prupe.3G181500_v2.0.a1 Prupe.3G181600_v2.0.a1 Prupe.3G181800_v2.0.a1 Prupe.3G181900_v2.0.a1 Prupe.3G182000_v2.0.a1 Prupe.3G182100_v2.0.a1 Prupe.3G182200_v2.0.a1 Prupe.3G182300_v2.0.a1 Prupe.3G182400_v2.0.a1 Prupe.3G182500_v2.0.a1 Prupe.3G182600_v2.0.a1 Prupe.3G182700_v2.0.a1 Prupe.5G051200_v2.0.a1 Prupe.5G051300_v2.0.a1 Prupe.5G051400_v2.0.a1 Prupe.5G051500_v2.0.a1 Prupe.5G051600_v2.0.a1 Prupe.5G051600_v2.0.a1 Prupe.5G051800_v2.0.a1
pyrus_communis pycom09g06470 pycom09g06490 pycom09g06510 pycom09g06520 pycom09g06570 pycom09g06580 pycom17g12440 pycom17g12450 pycom17g12530
rosa_chinensis RchiOBHm_Chr2g0117481 RchiOBHm_Chr2g0128321 RchiOBHm_Chr2g0128331 RchiOBHm_Chr2g0128581 RchiOBHm_Chr2g0128591 RchiOBHm_Chr2g0150651 RchiOBHm_Chr2g0150661 RchiOBHm_Chr2g0150741 RchiOBHm_Chr2g0150781 RchiOBHm_Chr2g0152581 RchiOBHm_Chr2g0152591 RchiOBHm_Chr2g0152641 RchiOBHm_Chr2g0152661 RchiOBHm_Chr2g0152711 RchiOBHm_Chr2g0152731 RchiOBHm_Chr2g0152871 RchiOBHm_Chr2g0152881 RchiOBHm_Chr2g0152901 RchiOBHm_Chr2g0152921 RchiOBHm_Chr2g0152931 RchiOBHm_Chr2g0152941 RchiOBHm_Chr3g0469621 RchiOBHm_Chr3g0469631 RchiOBHm_Chr5g0015591 RchiOBHm_Chr5g0046061 RchiOBHm_Chr5g0047341 RchiOBHm_Chr5g0063341 RchiOBHm_Chr5g0063351 RchiOBHm_Chr6g0264381 RchiOBHm_Chr7g0191741 RchiOBHm_Chr7g0210751 RchiOBHm_Chr7g0221871 RchiOBHm_Chr7g0225671 RchiOBHm_Chr7g0225891 RchiOBHm_Chr7g0225901 RchiOBHm_Chr7g0225961 RchiOBHm_Chr7g0225971 RchiOBHm_Chr7g0234031 RchiOBHm_Chr7g0234041
rosa_laevigata RLG00000001780 RLG00000001784 RLG00000001785 RLG00000001788 RLG00000001789 RLG00000001793 RLG00000001794 RLG00000002941 RLG00000004430 RLG00000014259 RLG00000018349 RLG00000019001 RLG00000019005 RLG00000019011 RLG00000020503 RLG00000020507 RLG00000020648 RLG00000020649 RLG00000020651 RLG00000020652 RLG00000020653 RLG00000020655 RLG00000020656 RLG00000020657 RLG00000023668 RLG00000024331 RLG00000034386 RLG00000035624 RLG00000035625
rosa_multiflora Rmu_co8401977.1_g000001 Rmu_co8409989.1_g000001 Rmu_co8432067.1_g000001 Rmu_co8491011.1_g000001 Rmu_sc0000580.1_g000085 Rmu_sc0000740.1_g000012 Rmu_sc0000740.1_g000014 Rmu_sc0000837.1_g000041 Rmu_sc0000837.1_g000077 Rmu_sc0001552.1_g000008 Rmu_sc0001617.1_g000001 Rmu_sc0002082.1_g000006 Rmu_sc0002082.1_g000007 Rmu_sc0002082.1_g000022 Rmu_sc0002989.1_g000013 Rmu_sc0003064.1_g000011 Rmu_sc0003127.1_g000003 Rmu_sc0003127.1_g000014 Rmu_sc0003127.1_g000028 Rmu_sc0003127.1_g000032 Rmu_sc0003127.1_g000034 Rmu_sc0003127.1_g000035 Rmu_sc0003127.1_g000054 Rmu_sc0003127.1_g000055 Rmu_sc0003465.1_g000034 Rmu_sc0005223.1_g000021 Rmu_sc0005302.1_g000004 Rmu_sc0005378.1_g000005 Rmu_sc0005378.1_g000007 Rmu_sc0005378.1_g000017 Rmu_sc0005378.1_g000034 Rmu_sc0005378.1_g000039 Rmu_sc0005378.1_g000042 Rmu_sc0005378.1_g000056 Rmu_sc0005378.1_g000057 Rmu_sc0005378.1_g000058 Rmu_sc0006483.1_g000013 Rmu_sc0008775.1_g000006 Rmu_sc0008775.1_g000011 Rmu_sc0009104.1_g000010 Rmu_sc0009104.1_g000011 Rmu_sc0009104.1_g000020 Rmu_sc0010960.1_g000006 Rmu_sc0011737.1_g000002 Rmu_sc0011737.1_g000004 Rmu_sc0012875.1_g000003 Rmu_sc0013122.1_g000002 Rmu_sc0018944.1_g000002 Rmu_sc0020155.1_g000001 Rmu_sc0020156.1_g000001 Rmu_ssc0000233.1_g000012 Rmu_ssc0000233.1_g000013 Rmu_ssc0000233.1_g000030 Rmu_ssc0000233.1_g000044 Rmu_ssc0000233.1_g000047 Rmu_ssc0000233.1_g000052 Rmu_ssc0000233.1_g000054 Rmu_ssc0000233.1_g000055 Rmu_ssc0000233.1_g000080 Rmu_ssc0000233.1_g000082 Rmu_ssc0000233.1_g000087 Rmu_ssc0000233.1_g000094 Rmu_ssc0000480.1_g000060 Rmu_ssc0000480.1_g000061
rosa_roxburghii Rroxscaffold_1G00017360 Rroxscaffold_1G00017370 Rroxscaffold_1G00060880 Rroxscaffold_2G00095370 Rroxscaffold_2G00095420 Rroxscaffold_2G00095450 Rroxscaffold_2G00095460 Rroxscaffold_2G00095490 Rroxscaffold_2G00095560 Rroxscaffold_2G00095570 Rroxscaffold_2G00096960 Rroxscaffold_2G00097010 Rroxscaffold_2G00126500 Rroxscaffold_3G00233390 Rroxscaffold_3G00233580 Rroxscaffold_3G00263590 Rroxscaffold_6G00411660
rosa_rugosa Rorug01G0142700.1 Rorug01G0148600.1 Rorug02G0212800 Rorug02G0422400 Rorug02G0434700 Rorug02G0434800 Rorug02G0435000 Rorug02G0435200 Rorug02G0435300 Rorug02G0435400 Rorug02G0435700 Rorug02G0435800 Rorug02G0436200 Rorug02G0436300 Rorug03G0102800 Rorug04G0123600 Rorug04G0123700 Rorug04G0123800 Rorug04G0124000 Rorug04G0124000 Rorug04G0124500 Rorug04G0124700 Rorug04G0124900 Rorug05G0028600.1 Rorug05G0356100 Rorug05G0356800 Rorug06G0011900 Rorug07G0092900 Rorug07G0122800 Rorug07G0232500 Rorug07G0232600 Rorug07G0232700
rosa_samantha Rh1AG408900 Rh2AG332700 Rh2AG333400 Rh2AG482100 Rh2AG482200 Rh2AG482500 Rh2AG496000 Rh2AG496100 Rh2AG496200 Rh2AG496300 Rh2AG497100 Rh2AG497200 Rh2AG497400 Rh2BG280300 Rh2BG340500 Rh2BG494400 Rh2BG494900 Rh2BG507800 Rh2BG507900 Rh2BG508000 Rh2BG508100 Rh2BG508300 Rh2BG508500 Rh2BG508700 Rh2BG509200 Rh2BG512700 Rh2CG271900 Rh2CG319100 Rh2CG319400 Rh2CG357200 Rh2CG468400 Rh2CG468500 Rh2CG468800 Rh2CG482200 Rh2CG482300 Rh2CG482400 Rh2CG482500 Rh2CG483200 Rh2CG483300 Rh2CG483500 Rh2CG483600 Rh2DG294600 Rh2DG357100 Rh2DG357700 Rh2DG503400 Rh2DG504300 Rh2DG504900 Rh2DG505500 Rh2DG505900 Rh2DG519000 Rh2DG519100 Rh2DG519300 Rh2DG519400 Rh2DG520000 Rh2DG520200 Rh2DG520500 Rh2DG521000 Rh2DG524300 Rh3AG152400 Rh3AG334400 Rh3BG176100 Rh3CG167200 Rh3DG199400 Rh3DG199500 Rh5AG415900 Rh5BG430800 Rh5CG454300 Rh5DG444600 Rh6AG247500 Rh6AG247700 Rh7AG120600 Rh7AG369800 Rh7AG370800 Rh7AG468300 Rh7BG366400 Rh7CG125200 Rh7CG388700 Rh7CG389400 Rh7CG459600 Rh7DG123300 Rh7DG123400 Rh7DG123800 Rh7DG123900 Rh7DG377200
rosa_wichuraiana Rw0G004850 Rw0G004870 Rw0G013120 Rw1G013520 Rw2G026850 Rw2G026910 Rw2G027120 Rw2G039340 Rw2G039360 Rw2G039410 Rw2G039420 Rw2G039440 Rw2G039520 Rw2G040810 Rw2G040830 Rw2G040850 Rw2G040860 Rw2G040880 Rw2G041210 Rw2G041220 Rw2G041240 Rw2G041250 Rw3G014370 Rw5G010520 Rw5G039070 Rw6G021410 Rw6G021420 Rw7G010280 Rw7G021780 Rw7G031820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 509
AccI GTMKAC 1 cut(s) 198
AciI CCGC 4 cut(s) 170, 173, 261, 282
AcoI YGGCCR 1 cut(s) 561
AcsI RAATTY 1 cut(s) 357
AcuI CTGAAG 1 cut(s) 101
AfaI GTAC 1 cut(s) 76
AfiI CCNNNNNNNGG 2 cut(s) 111, 172
AgsI TTSAA 1 cut(s) 214
AjnI CCWGG 1 cut(s) 429
AluBI AGCT 1 cut(s) 491
AluI AGCT 1 cut(s) 491
Alw26I GTCTC 1 cut(s) 253
Ama87I CYCGRG 1 cut(s) 319
AoxI GGCC 1 cut(s) 561
ApeKI GCWGC 1 cut(s) 491
ApoI RAATTY 1 cut(s) 357
ArsI GACNNNNNNTTYG 2 cut(s) 176, 208
Asp700I GAANNNNTTC 1 cut(s) 62
AspLEI GCGC 2 cut(s) 510, 544
AvaI CYCGRG 1 cut(s) 319
BbvI GCAGC 1 cut(s) 478
BccI CCATC 2 cut(s) 13, 105
BceAI ACGGC 1 cut(s) 479
BciT130I CCWGG 1 cut(s) 431
BclI TGATCA 1 cut(s) 301
BcoDI GTCTC 1 cut(s) 253
BfaI CTAG 2 cut(s) 354, 534
BfmI CTRYAG 1 cut(s) 225
BisI GCNGC 2 cut(s) 171, 492
BlsI GCNGC 2 cut(s) 172, 493
Bme1390I CCNGG 1 cut(s) 431
BmeT110I CYCGRG 1 cut(s) 319
BmiI GGNNCC 1 cut(s) 516
BmrFI CCNGG 1 cut(s) 431
BmsI GCATC 2 cut(s) 275, 373
BpuEI CTTGAG 1 cut(s) 88
Bsc4I CCNNNNNNNGG 2 cut(s) 111, 172
Bse1I ACTGG 1 cut(s) 543
BseBI CCWGG 1 cut(s) 431
BseGI GGATG 2 cut(s) 116, 290
BseLI CCNNNNNNNGG 2 cut(s) 111, 172
BseMII CTCAG 3 cut(s) 83, 218, 387
BseNI ACTGG 1 cut(s) 543
BseXI GCAGC 1 cut(s) 478
Bsh1285I CGRYCG 1 cut(s) 42
BshFI GGCC 1 cut(s) 563
BsiEI CGRYCG 1 cut(s) 42
BsiHKCI CYCGRG 1 cut(s) 319
BslI CCNNNNNNNGG 2 cut(s) 111, 172
BsmAI GTCTC 1 cut(s) 253
BsnI GGCC 1 cut(s) 563
BsoBI CYCGRG 1 cut(s) 319
Bsp143I GATC 2 cut(s) 39, 301
BspACI CCGC 4 cut(s) 170, 173, 261, 282
BspANI GGCC 1 cut(s) 563
BspCNI CTCAG 3 cut(s) 84, 217, 388
BspLI GGNNCC 1 cut(s) 516
BspMAI CTGCAG 1 cut(s) 229
BsrI ACTGG 1 cut(s) 543
BssMI GATC 2 cut(s) 39, 301
Bst2UI CCWGG 1 cut(s) 431
Bst4CI ACNGT 2 cut(s) 344, 376
Bst6I CTCTTC 1 cut(s) 494
BstDEI CTNAG 3 cut(s) 92, 204, 396
BstF5I GGATG 2 cut(s) 116, 290
BstHHI GCGC 2 cut(s) 510, 544
BstKTI GATC 2 cut(s) 42, 304
BstMAI GTCTC 1 cut(s) 253
BstMBI GATC 2 cut(s) 39, 301
BstMCI CGRYCG 1 cut(s) 42
BstNI CCWGG 1 cut(s) 431
BstNSI RCATGY 1 cut(s) 292
BstSCI CCNGG 1 cut(s) 429
BstSFI CTRYAG 1 cut(s) 225
BstV1I GCAGC 1 cut(s) 478
BsuRI GGCC 1 cut(s) 563
BtsCI GGATG 2 cut(s) 116, 290
BtsI GCAGTG 1 cut(s) 222
BtsIMutI CAGTG 3 cut(s) 222, 300, 372
CfoI GCGC 2 cut(s) 510, 544
Csp6I GTAC 1 cut(s) 75
CviAII CATG 1 cut(s) 289
CviQI GTAC 1 cut(s) 75
DdeI CTNAG 3 cut(s) 92, 204, 396
DpnI GATC 2 cut(s) 41, 303
DpnII GATC 2 cut(s) 39, 301
EaeI YGGCCR 1 cut(s) 561
Eam1104I CTCTTC 1 cut(s) 494
EarI CTCTTC 1 cut(s) 494
EciI GGCGGA 2 cut(s) 188, 297
Eco32I GATATC 1 cut(s) 331
Eco57I CTGAAG 1 cut(s) 101
Eco88I CYCGRG 1 cut(s) 319
EcoRI GAATTC 1 cut(s) 357
EcoRII CCWGG 1 cut(s) 429
EcoRV GATATC 1 cut(s) 331
EcoT22I ATGCAT 1 cut(s) 290
FaeI CATG 1 cut(s) 292
FaiI YATR 7 cut(s) 26, 98, 218, 290, 312, 506, 546
FalI AAGNNNNNCTT 4 cut(s) 50, 82, 99, 131
FatI CATG 1 cut(s) 288
FbaI TGATCA 1 cut(s) 301
FblI GTMKAC 1 cut(s) 198
Fnu4HI GCNGC 2 cut(s) 171, 492
FokI GGATG 2 cut(s) 123, 297
Fsp4HI GCNGC 2 cut(s) 171, 492
FspBI CTAG 2 cut(s) 354, 534
FspI TGCGCA 1 cut(s) 509
GlaI GCGC 2 cut(s) 509, 543
GluI GCNGC 2 cut(s) 171, 492
HaeIII GGCC 1 cut(s) 563
HhaI GCGC 2 cut(s) 510, 544
Hin1II CATG 1 cut(s) 292
Hin6I GCGC 2 cut(s) 508, 542
HinP1I GCGC 2 cut(s) 508, 542
HincII GTYRAC 2 cut(s) 13, 436
HindII GTYRAC 2 cut(s) 13, 436
Hpy166II GTNNAC 3 cut(s) 13, 199, 436
Hpy188I TCNGA 1 cut(s) 397
Hpy188III TCNNGA 2 cut(s) 67, 354
Hpy8I GTNNAC 3 cut(s) 13, 199, 436
Hpy99I CGWCG 1 cut(s) 40
HpyAV CCTTC 2 cut(s) 101, 436
HpyCH4III ACNGT 2 cut(s) 344, 376
HpyCH4V TGCA 5 cut(s) 48, 227, 237, 288, 414
HpyF3I CTNAG 3 cut(s) 92, 204, 396
Hsp92II CATG 1 cut(s) 292
HspAI GCGC 2 cut(s) 508, 542
Ksp22I TGATCA 1 cut(s) 301
Kzo9I GATC 2 cut(s) 39, 301
LpnPI CCDG 9 cut(s) 104, 139, 144, 191, 416, 443, 465, 524, 531
Lsp1109I GCAGC 1 cut(s) 478
LweI GCATC 2 cut(s) 275, 373
MaeI CTAG 2 cut(s) 354, 534
MaeIII GTNAC 2 cut(s) 31, 133
MalI GATC 2 cut(s) 41, 303
MboI GATC 2 cut(s) 39, 301
MboII GAAGA 2 cut(s) 133, 511
MluCI AATT 6 cut(s) 80, 238, 357, 409, 418, 474
MnlI CCTC 7 cut(s) 46, 63, 79, 142, 372, 380, 445
Mph1103I ATGCAT 1 cut(s) 290
MroXI GAANNNNTTC 1 cut(s) 62
MseI TTAA 1 cut(s) 179
MslI CAYNNNNRTG 1 cut(s) 293
MspA1I CMGCKG 1 cut(s) 491
MspR9I CCNGG 1 cut(s) 431
MvaI CCWGG 1 cut(s) 431
NdeII GATC 2 cut(s) 39, 301
NlaIII CATG 1 cut(s) 292
NlaIV GGNNCC 1 cut(s) 516
NmeAIII GCCGAG 1 cut(s) 539
NmuCI GTSAC 1 cut(s) 133
NsbI TGCGCA 1 cut(s) 509
NsiI ATGCAT 1 cut(s) 290
NspI RCATGY 1 cut(s) 292
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PdmI GAANNNNTTC 1 cut(s) 62
PkrI GCNGC 2 cut(s) 172, 493
Ple19I CGATCG 1 cut(s) 42
Psp6I CCWGG 1 cut(s) 429
PspGI CCWGG 1 cut(s) 429
PspN4I GGNNCC 1 cut(s) 516
PstI CTGCAG 1 cut(s) 229
PvuI CGATCG 1 cut(s) 42
PvuII CAGCTG 1 cut(s) 491
RsaI GTAC 1 cut(s) 76
RsaNI GTAC 1 cut(s) 75
RseI CAYNNNNRTG 1 cut(s) 293
SaqAI TTAA 1 cut(s) 179
SatI GCNGC 2 cut(s) 171, 492
Sau3AI GATC 2 cut(s) 39, 301
ScrFI CCNGG 1 cut(s) 431
SetI ASST 6 cut(s) 90, 123, 372, 392, 493, 516
SfaNI GCATC 2 cut(s) 275, 373
SfcI CTRYAG 1 cut(s) 225
SmiMI CAYNNNNRTG 1 cut(s) 293
SmlI CTYRAG 1 cut(s) 67
SmoI CTYRAG 1 cut(s) 67
Sse9I AATT 6 cut(s) 80, 238, 357, 409, 418, 474
SsiI CCGC 4 cut(s) 170, 173, 261, 282
SspMI CTAG 2 cut(s) 354, 534
StyD4I CCNGG 1 cut(s) 429
TaaI ACNGT 2 cut(s) 344, 376
TaqI TCGA 1 cut(s) 42
TasI AATT 6 cut(s) 80, 238, 357, 409, 418, 474
TauI GCSGC 1 cut(s) 173
Tru1I TTAA 1 cut(s) 179
Tru9I TTAA 1 cut(s) 179
TscAI CASTG 3 cut(s) 229, 300, 379
TseFI GTSAC 1 cut(s) 133
TseI GCWGC 1 cut(s) 491
Tsp45I GTSAC 1 cut(s) 133
TspDTI ATGAA 2 cut(s) 327, 453
TspRI CASTG 3 cut(s) 229, 300, 379
XapI RAATTY 1 cut(s) 357
XbaI TCTAGA 1 cut(s) 353
XceI RCATGY 1 cut(s) 292
XmiI GTMKAC 1 cut(s) 198
XmnI GAANNNNTTC 1 cut(s) 62
XspI CTAG 2 cut(s) 354, 534
Zsp2I ATGCAT 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.