RLG00000023668

Wall-associated receptor

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
26904883 .. 26909242
4360 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023668

Sequence Viewer

Length: 2334 bp
ATGGCCTCATTACATGAGAGGATTCTTGTTACGCAGCTCTATATGTTCATGTTAGTGGCCGTAACAACAACAACATTGCTAGCAGCAGCGCAGACCCTAGCACCGCCTCCTCAAGCCAAGTCAGGGTGCAAAGAAAAGTGTGGTGATCTCACAATTCCATATCCATTTGGCATAGGCGAAAGTTGTTCCATGCGACCGGAATTCACCATCGCTTGTGATCAATCCACCACTGTATCCCCATCGGCAAACTTCACAAATGGTACCTTCACCTTTCCCATCACCATTACTAAATTTTCCCTTGCTGACGGCGAGTTGCAAGTAATGCAGGAGATAGCACGAGATTGTTACGATGACAAGGGTACTAATACAAACAGCGGCAGTTCACTAGAGCTGCCTGCTCCTTATACCATCTCTACCAAAAACAACTTCTTTACCCTTGGCTGCAACGTTTTCTCTCTGTATCAAGGAGTTGTGGATGAAGATTCCCAAAAAGGTGTAAGCGTTACCTTATGTCAGGATATTCTTGGCAAAGAAATACCCGAGTCTTGCGGCGGCTTCGGGTGTGCCCAAACTTCCATCGCTAGTGGACTGCAAAACATTTCGATTGCACTGGTTGCACTTAACGGCTATAACGCGAGTGATCCCTGGGAATCAAACTACAAGTGCAGCTACGCCTTCATCGTTGAAAAAGGCAACTTCACATTCGCACCGAAAACTAGTTTTCAACAACTGAATACAACAATTCAGCAGCTTCCGGTGGCTGTTAATTGGGCAATCGGTGATGAGTCATGTGAAGTAGCAAAGAACCTGACTAGTTATTCATGCAAAGAGAATACTTGTTGTGTCGACCGTAATACCATCACTAATGGGACGGCCGGTTACATTTGCCGGTGCTTGCCAGGCTACGAAGGAAACCCATACCTCGGTTGCCAAGATATTGATGAATGCAAGTTCTCATCAAGCGATCCCTGCAATAATGGAAAGTGCGTAAATTCACCTCCGGGAAATTACTCGTGTAGATGTATTAAAGGGTTCAGAAACCAAGACGACATGACTTGCATCCCATATTATTCCTGGTCAAACAACACTTTCCTCAAAATATCATTAGGTATTGGCAGCAGTGTTGGACTAGTACTTCTAGCCATTGCTGCATGGTGGTTGGTCCAAGTCATAAAGAAAAGGAAAACCAAAAAACGAAAGGAGGAGTTTTTTAAACAAAATGGTGGTTTAGTATTGCAGCAACAATTATCTTCTGGTGATCAAGCTAATGTTGAAAAAATTAGGTTGTTCAATTCAAGGGAGCTAGAGAAAGCCACGGAACAGTTTAGCATAAATCGAATTCTTGGCCAGGGAGGCCAAGGTACTGTTTACAAAGGAATGTTGATGGATGGACAAATAGTTGCTGTCAAAAAGTCTAAAATAGTTAACGGAGGCGAAGTTCAACAATTCATTAATGAAATTGTGATTCTTTCACAAATTAACCACAGAAATGTGGTTAAACTATTGGGTTGTTGTTTGGAGACCGAAATTCCCCTCTTGGTCTATGAATTTTTACCGAACGGAACACTTTCTCAGTACATTCATGACCAAGATGAGGAGTTTCCTCTTACATGGGGAACGCGATTGCGAGTGTCTACCGAAGTTGCTGGAGCTCTTTCATATTTACACTCGGCAGCTTCTATACCTATTTACCACCGGGATATCAAGTCCACGAACATACTCTTGGATGCCAAGTATAGAGCAAAAATTGCAGATTTTGGGACTTCAAGATCCATTTCCATTGACCAGACACACCTCACAACACAAGTACATGGAACATTTGGTTATTTGGACCCAGAGTACTTTCAATCAAGCCAATTTACAGAAAAGAGTGATGTTTACAGCTTCGGTGTGGTCCTTGCTGAGCTATTGACTGGACAAAAACCAGTTTCCATGATGAGGTCGCAAGAAAGTAGAAGCCTAGCAACTCATTTCCTTCTTTCCATGGAGCAGGATAGTTTGTTTGATATTCTTGACGCTCAAGTTATGAAAGATGGTAGCAAAGAAGAAATTATAGCAGTTGCTAACCTTGCGCAAAGATGTTTAAATTTGAATGGAAGGAAACGTCCTACTATGAAAGAAGTGGCGGCAGAATTGGAGGGAGTTCGATTGGCAGTCAAAGATGCTGATCATGTCCAACAAAATTTGGTAGAGGAAGGAGACTTCAGAACCCATGAAATTACCACCGAGGCCTATTGGGATGTTTTTTCTACATCACCCGGTCCTTTTACAGATGGTGGTATTGCAGGTTCTTCATCTGATGTACAACCACTGATGTTTTACAATATGCAGTAG

Protein Analysis

778

Amino Acids

85.57

Weight (kDa)

5.29

Isoelectric Point (pI)

34.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 43 - 107 4.1e-09 Wall-associated receptor kinase galacturonan-binding
Pkinase PF00069 443 - 709 6.4e-49 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 444 - 712 8.2e-49 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000052)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16090 AT1G16110 AT1G16120 AT1G16130 AT1G16150 AT1G16160 AT1G16260 AT1G16260 AT1G16260 AT1G79670 AT1G79670
fragaria_vesca FvH4_1g22960 FvH4_3g09860 FvH4_3g10284 FvH4_3g10284 FvH4_3g10540 FvH4_3g24040 FvH4_3g35290 FvH4_3g35290 FvH4_5g06860 FvH4_5g06940 FvH4_6g15920 FvH4_6g15920 FvH4_6g37660 FvH4_6g37670 FvH4_6g37691 FvH4_6g37700 FvH4_6g37710 FvH4_6g38990 FvH4_6g39000 FvH4_6g39020 FvH4_6g39020 FvH4_6g39020 FvH4_6g39021 FvH4_6g39030 FvH4_6g39030 FvH4_6g39031 FvH4_6g39032 FvH4_6g45200 FvH4_6g45200
malus_domestica MD08G1107900.v1.1 MD09G1145100.v1.1 MD09G1145200.v1.1 MD09G1145300.v1.1 MD09G1145400.v1.1 MD09G1145500.v1.1 MD17G1131600.v1.1 MD17G1131700.v1.1 MD17G1131900.v1.1 MD17G1132000.v1.1
prunus_persica Prupe.1G188400_v2.0.a1 Prupe.1G188700_v2.0.a1 Prupe.3G180500_v2.0.a1 Prupe.3G180600_v2.0.a1 Prupe.3G180700_v2.0.a1 Prupe.3G181000_v2.0.a1 Prupe.3G181100_v2.0.a1 Prupe.3G181100_v2.0.a1 Prupe.3G181200_v2.0.a1 Prupe.3G181200_v2.0.a1 Prupe.3G181400_v2.0.a1 Prupe.3G181500_v2.0.a1 Prupe.3G181600_v2.0.a1 Prupe.3G181800_v2.0.a1 Prupe.3G181900_v2.0.a1 Prupe.3G182000_v2.0.a1 Prupe.3G182100_v2.0.a1 Prupe.3G182200_v2.0.a1 Prupe.3G182300_v2.0.a1 Prupe.3G182400_v2.0.a1 Prupe.3G182500_v2.0.a1 Prupe.3G182600_v2.0.a1 Prupe.3G182700_v2.0.a1 Prupe.5G051200_v2.0.a1 Prupe.5G051300_v2.0.a1 Prupe.5G051400_v2.0.a1 Prupe.5G051500_v2.0.a1 Prupe.5G051600_v2.0.a1 Prupe.5G051600_v2.0.a1 Prupe.5G051800_v2.0.a1
pyrus_communis pycom09g06470 pycom09g06490 pycom09g06510 pycom09g06520 pycom09g06570 pycom09g06580 pycom17g12440 pycom17g12450 pycom17g12530
rosa_chinensis RchiOBHm_Chr2g0117481 RchiOBHm_Chr2g0128321 RchiOBHm_Chr2g0128331 RchiOBHm_Chr2g0128581 RchiOBHm_Chr2g0128591 RchiOBHm_Chr2g0150651 RchiOBHm_Chr2g0150661 RchiOBHm_Chr2g0150741 RchiOBHm_Chr2g0150781 RchiOBHm_Chr2g0152581 RchiOBHm_Chr2g0152591 RchiOBHm_Chr2g0152641 RchiOBHm_Chr2g0152661 RchiOBHm_Chr2g0152711 RchiOBHm_Chr2g0152731 RchiOBHm_Chr2g0152871 RchiOBHm_Chr2g0152881 RchiOBHm_Chr2g0152901 RchiOBHm_Chr2g0152921 RchiOBHm_Chr2g0152931 RchiOBHm_Chr2g0152941 RchiOBHm_Chr3g0469621 RchiOBHm_Chr3g0469631 RchiOBHm_Chr5g0015591 RchiOBHm_Chr5g0046061 RchiOBHm_Chr5g0047341 RchiOBHm_Chr5g0063341 RchiOBHm_Chr5g0063351 RchiOBHm_Chr6g0264381 RchiOBHm_Chr7g0191741 RchiOBHm_Chr7g0210751 RchiOBHm_Chr7g0221871 RchiOBHm_Chr7g0225671 RchiOBHm_Chr7g0225891 RchiOBHm_Chr7g0225901 RchiOBHm_Chr7g0225961 RchiOBHm_Chr7g0225971 RchiOBHm_Chr7g0234031 RchiOBHm_Chr7g0234041
rosa_laevigata RLG00000001780 RLG00000001784 RLG00000001785 RLG00000001788 RLG00000001789 RLG00000001793 RLG00000001794 RLG00000002941 RLG00000004430 RLG00000014259 RLG00000018349 RLG00000019001 RLG00000019005 RLG00000019011 RLG00000020503 RLG00000020507 RLG00000020648 RLG00000020649 RLG00000020651 RLG00000020652 RLG00000020653 RLG00000020655 RLG00000020656 RLG00000020657 RLG00000023668 RLG00000024331 RLG00000034386 RLG00000035624 RLG00000035625
rosa_multiflora Rmu_co8401977.1_g000001 Rmu_co8409989.1_g000001 Rmu_co8432067.1_g000001 Rmu_co8491011.1_g000001 Rmu_sc0000580.1_g000085 Rmu_sc0000740.1_g000012 Rmu_sc0000740.1_g000014 Rmu_sc0000837.1_g000041 Rmu_sc0000837.1_g000077 Rmu_sc0001552.1_g000008 Rmu_sc0001617.1_g000001 Rmu_sc0002082.1_g000006 Rmu_sc0002082.1_g000007 Rmu_sc0002082.1_g000022 Rmu_sc0002989.1_g000013 Rmu_sc0003064.1_g000011 Rmu_sc0003127.1_g000003 Rmu_sc0003127.1_g000014 Rmu_sc0003127.1_g000028 Rmu_sc0003127.1_g000032 Rmu_sc0003127.1_g000034 Rmu_sc0003127.1_g000035 Rmu_sc0003127.1_g000054 Rmu_sc0003127.1_g000055 Rmu_sc0003465.1_g000034 Rmu_sc0005223.1_g000021 Rmu_sc0005302.1_g000004 Rmu_sc0005378.1_g000005 Rmu_sc0005378.1_g000007 Rmu_sc0005378.1_g000017 Rmu_sc0005378.1_g000034 Rmu_sc0005378.1_g000039 Rmu_sc0005378.1_g000042 Rmu_sc0005378.1_g000056 Rmu_sc0005378.1_g000057 Rmu_sc0005378.1_g000058 Rmu_sc0006483.1_g000013 Rmu_sc0008775.1_g000006 Rmu_sc0008775.1_g000011 Rmu_sc0009104.1_g000010 Rmu_sc0009104.1_g000011 Rmu_sc0009104.1_g000020 Rmu_sc0010960.1_g000006 Rmu_sc0011737.1_g000002 Rmu_sc0011737.1_g000004 Rmu_sc0012875.1_g000003 Rmu_sc0013122.1_g000002 Rmu_sc0018944.1_g000002 Rmu_sc0020155.1_g000001 Rmu_sc0020156.1_g000001 Rmu_ssc0000233.1_g000012 Rmu_ssc0000233.1_g000013 Rmu_ssc0000233.1_g000030 Rmu_ssc0000233.1_g000044 Rmu_ssc0000233.1_g000047 Rmu_ssc0000233.1_g000052 Rmu_ssc0000233.1_g000054 Rmu_ssc0000233.1_g000055 Rmu_ssc0000233.1_g000080 Rmu_ssc0000233.1_g000082 Rmu_ssc0000233.1_g000087 Rmu_ssc0000233.1_g000094 Rmu_ssc0000480.1_g000060 Rmu_ssc0000480.1_g000061
rosa_roxburghii Rroxscaffold_1G00017360 Rroxscaffold_1G00017370 Rroxscaffold_1G00060880 Rroxscaffold_2G00095370 Rroxscaffold_2G00095420 Rroxscaffold_2G00095450 Rroxscaffold_2G00095460 Rroxscaffold_2G00095490 Rroxscaffold_2G00095560 Rroxscaffold_2G00095570 Rroxscaffold_2G00096960 Rroxscaffold_2G00097010 Rroxscaffold_2G00126500 Rroxscaffold_3G00233390 Rroxscaffold_3G00233580 Rroxscaffold_3G00263590 Rroxscaffold_6G00411660
rosa_rugosa Rorug01G0142700.1 Rorug01G0148600.1 Rorug02G0212800 Rorug02G0422400 Rorug02G0434700 Rorug02G0434800 Rorug02G0435000 Rorug02G0435200 Rorug02G0435300 Rorug02G0435400 Rorug02G0435700 Rorug02G0435800 Rorug02G0436200 Rorug02G0436300 Rorug03G0102800 Rorug04G0123600 Rorug04G0123700 Rorug04G0123800 Rorug04G0124000 Rorug04G0124000 Rorug04G0124500 Rorug04G0124700 Rorug04G0124900 Rorug05G0028600.1 Rorug05G0356100 Rorug05G0356800 Rorug06G0011900 Rorug07G0092900 Rorug07G0122800 Rorug07G0232500 Rorug07G0232600 Rorug07G0232700
rosa_samantha Rh1AG408900 Rh2AG332700 Rh2AG333400 Rh2AG482100 Rh2AG482200 Rh2AG482500 Rh2AG496000 Rh2AG496100 Rh2AG496200 Rh2AG496300 Rh2AG497100 Rh2AG497200 Rh2AG497400 Rh2BG280300 Rh2BG340500 Rh2BG494400 Rh2BG494900 Rh2BG507800 Rh2BG507900 Rh2BG508000 Rh2BG508100 Rh2BG508300 Rh2BG508500 Rh2BG508700 Rh2BG509200 Rh2BG512700 Rh2CG271900 Rh2CG319100 Rh2CG319400 Rh2CG357200 Rh2CG468400 Rh2CG468500 Rh2CG468800 Rh2CG482200 Rh2CG482300 Rh2CG482400 Rh2CG482500 Rh2CG483200 Rh2CG483300 Rh2CG483500 Rh2CG483600 Rh2DG294600 Rh2DG357100 Rh2DG357700 Rh2DG503400 Rh2DG504300 Rh2DG504900 Rh2DG505500 Rh2DG505900 Rh2DG519000 Rh2DG519100 Rh2DG519300 Rh2DG519400 Rh2DG520000 Rh2DG520200 Rh2DG520500 Rh2DG521000 Rh2DG524300 Rh3AG152400 Rh3AG334400 Rh3BG176100 Rh3CG167200 Rh3DG199400 Rh3DG199500 Rh5AG415900 Rh5BG430800 Rh5CG454300 Rh5DG444600 Rh6AG247500 Rh6AG247700 Rh7AG120600 Rh7AG369800 Rh7AG370800 Rh7AG468300 Rh7BG366400 Rh7CG125200 Rh7CG388700 Rh7CG389400 Rh7CG459600 Rh7DG123300 Rh7DG123400 Rh7DG123800 Rh7DG123900 Rh7DG377200
rosa_wichuraiana Rw0G004850 Rw0G004870 Rw0G013120 Rw1G013520 Rw2G026850 Rw2G026910 Rw2G027120 Rw2G039340 Rw2G039360 Rw2G039410 Rw2G039420 Rw2G039440 Rw2G039520 Rw2G040810 Rw2G040830 Rw2G040850 Rw2G040860 Rw2G040880 Rw2G041210 Rw2G041220 Rw2G041240 Rw2G041250 Rw3G014370 Rw5G010520 Rw5G039070 Rw6G021410 Rw6G021420 Rw7G010280 Rw7G021780 Rw7G031820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 2073
Acc36I ACCTGC 1 cut(s) 2276
Acc65I GGTACC 1 cut(s) 260
AccB1I GGYRCC 1 cut(s) 260
AccI GTMKAC 2 cut(s) 846, 1634
AccII CGCG 2 cut(s) 635, 1621
AciI CCGC 5 cut(s) 104, 375, 549, 552, 2126
AclI AACGTT 1 cut(s) 447
AclWI GGATC 3 cut(s) 635, 959, 1764
AcoI YGGCCR 3 cut(s) 57, 873, 1345
AcsI RAATTY 8 cut(s) 200, 290, 991, 1338, 1527, 1547, 2086, 2182
AcuI CTGAAG 1 cut(s) 2188
AfaI GTAC 8 cut(s) 262, 361, 1134, 1363, 1577, 1809, 1841, 2304
AfiI CCNNNNNNNGG 4 cut(s) 123, 923, 1594, 1938
AgsI TTSAA 9 cut(s) 686, 725, 1274, 1291, 1296, 1442, 1767, 1847, 2092
AhlI ACTAGT 3 cut(s) 716, 812, 1129
AjnI CCWGG 4 cut(s) 644, 898, 1073, 1347
AjuI GAANNNNNNNTTGG 4 cut(s) 410, 442, 1706, 1738
AloI GAACNNNNNNTCC 2 cut(s) 1422, 1454
Alw21I GWGCWC 1 cut(s) 1654
Alw26I GTCTC 2 cut(s) 1514, 2193
AlwI GGATC 3 cut(s) 635, 959, 1764
Ama87I CYCGRG 1 cut(s) 539
AoxI GGCC 6 cut(s) 3, 57, 873, 1345, 1354, 2229
ApoI RAATTY 8 cut(s) 200, 290, 991, 1338, 1527, 1547, 2086, 2182
AseI ATTAAT 1 cut(s) 1452
Asp700I GAANNNNTTC 1 cut(s) 1567
Asp718I GGTACC 1 cut(s) 260
AspLEI GCGC 2 cut(s) 91, 2074
AspS9I GGNCC 4 cut(s) 1162, 1831, 1894, 2261
AsuC2I CCSGG 3 cut(s) 1002, 1697, 2259
AsuHPI GGTGA 8 cut(s) 155, 196, 259, 271, 791, 987, 1268, 2247
AsuNHI GCTAGC 1 cut(s) 79
AvaI CYCGRG 1 cut(s) 539
AvaII GGWCC 4 cut(s) 1162, 1831, 1894, 2261
BaeGI GKGCMC 1 cut(s) 568
BaeI ACNNNNGTAYC 2 cut(s) 216, 249
BalI TGGCCA 1 cut(s) 1347
BanI GGYRCC 1 cut(s) 260
BanII GRGCYC 1 cut(s) 1654
BauI CACGAG 2 cut(s) 336, 1012
Bbv12I GWGCWC 1 cut(s) 1654
BceAI ACGGC 4 cut(s) 44, 322, 640, 888
BciT130I CCWGG 4 cut(s) 646, 900, 1075, 1349
BciVI GTATCC 1 cut(s) 244
BclI TGATCA 3 cut(s) 217, 1258, 2167
BcnI CCSGG 3 cut(s) 1002, 1697, 2259
BcoDI GTCTC 2 cut(s) 1514, 2193
BcuI ACTAGT 3 cut(s) 716, 812, 1129
BfuAI ACCTGC 1 cut(s) 2276
BfuI GTATCC 1 cut(s) 244
BglI GCCNNNNNGGC 1 cut(s) 1353
BlpI GCTNAGC 1 cut(s) 1902
BmcAI AGTACT 2 cut(s) 1134, 1841
Bme1390I CCNGG 7 cut(s) 646, 900, 1002, 1075, 1349, 1697, 2259
Bme18I GGWCC 4 cut(s) 1162, 1831, 1894, 2261
BmeT110I CYCGRG 1 cut(s) 539
BmgT120I GGNCC 4 cut(s) 1162, 1831, 1894, 2261
BmiI GGNNCC 2 cut(s) 262, 1833
BmrFI CCNGG 7 cut(s) 646, 900, 1002, 1075, 1349, 1697, 2259
BmsI GCATC 3 cut(s) 1068, 1717, 2152
BmtI GCTAGC 1 cut(s) 83
BpmI CTGGAG 1 cut(s) 1668
Bpu1102I GCTNAGC 1 cut(s) 1902
BpuEI CTTGAG 2 cut(s) 96, 2004
BpuMI CCSGG 3 cut(s) 1002, 1697, 2259
BsaBI GATNNNNATC 1 cut(s) 2166
BsaI GGTCTC 1 cut(s) 1514
BsaJI CCNNGG 9 cut(s) 436, 644, 645, 922, 1314, 1348, 1357, 1983, 2226
BsaWI WCCGGW 2 cut(s) 196, 754
BsaXI ACNNNNNCTCC 2 cut(s) 1422, 1452
Bsc4I CCNNNNNNNGG 4 cut(s) 123, 923, 1594, 1938
Bse118I RCCGGY 2 cut(s) 875, 888
Bse1I ACTGG 3 cut(s) 615, 1918, 1925
Bse3DI GCAATG 2 cut(s) 74, 1143
Bse8I GATNNNNATC 1 cut(s) 2166
BseBI CCWGG 4 cut(s) 646, 900, 1075, 1349
BseDI CCNNGG 9 cut(s) 436, 644, 645, 922, 1314, 1348, 1357, 1983, 2226
BseGI GGATG 5 cut(s) 481, 1059, 1393, 1732, 2245
BseJI GATNNNNATC 1 cut(s) 2166
BseLI CCNNNNNNNGG 4 cut(s) 123, 923, 1594, 1938
BseMI GCAATG 2 cut(s) 74, 1143
BseMII CTCAG 2 cut(s) 1586, 1893
BseNI ACTGG 3 cut(s) 615, 1918, 1925
BseRI GAGGAG 3 cut(s) 99, 1217, 1610
BseSI GKGCMC 1 cut(s) 568
BseX3I CGGCCG 1 cut(s) 873
BsgI GTGCAG 1 cut(s) 685
Bsh1236I CGCG 2 cut(s) 635, 1621
Bsh1285I CGRYCG 3 cut(s) 197, 850, 876
BshFI GGCC 6 cut(s) 5, 59, 875, 1347, 1356, 2231
BshNI GGYRCC 1 cut(s) 260
BsiEI CGRYCG 3 cut(s) 197, 850, 876
BsiHKAI GWGCWC 1 cut(s) 1654
BsiHKCI CYCGRG 1 cut(s) 539
BsiSI CCGG 7 cut(s) 197, 755, 876, 889, 1001, 1696, 2259
BslFI GGGAC 2 cut(s) 883, 1774
BslI CCNNNNNNNGG 4 cut(s) 123, 923, 1594, 1938
BsmAI GTCTC 2 cut(s) 1514, 2193
BsmFI GGGAC 2 cut(s) 883, 1774
BsmI GAATGC 1 cut(s) 950
BsnI GGCC 6 cut(s) 5, 59, 875, 1347, 1356, 2231
Bso31I GGTCTC 1 cut(s) 1514
BsoBI CYCGRG 1 cut(s) 539
Bsp1286I GDGCHC 2 cut(s) 568, 1654
Bsp1407I TGTACA 1 cut(s) 2302
Bsp143I GATC 7 cut(s) 145, 217, 640, 964, 1258, 1769, 2167
Bsp1720I GCTNAGC 1 cut(s) 1902
Bsp19I CCATGG 1 cut(s) 1983
BspACI CCGC 5 cut(s) 104, 375, 549, 552, 2126
BspANI GGCC 6 cut(s) 5, 59, 875, 1347, 1356, 2231
BspCNI CTCAG 2 cut(s) 1585, 1894
BspFNI CGCG 2 cut(s) 635, 1621
BspHI TCATGA 1 cut(s) 1582
BspLI GGNNCC 2 cut(s) 262, 1833
BspMI ACCTGC 1 cut(s) 2276
BspOI GCTAGC 1 cut(s) 83
BspPI GGATC 3 cut(s) 635, 959, 1764
BspT107I GGYRCC 1 cut(s) 260
BspTNI GGTCTC 1 cut(s) 1514
BsrDI GCAATG 2 cut(s) 74, 1143
BsrFI RCCGGY 2 cut(s) 875, 888
BsrGI TGTACA 1 cut(s) 2302
BsrI ACTGG 3 cut(s) 615, 1918, 1925
BssAI RCCGGY 2 cut(s) 875, 888
BssECI CCNNGG 9 cut(s) 436, 644, 645, 922, 1314, 1348, 1357, 1983, 2226
BssMI GATC 7 cut(s) 145, 217, 640, 964, 1258, 1769, 2167
BssSI CACGAG 2 cut(s) 336, 1012
BssT1I CCWWGG 3 cut(s) 436, 1357, 1983
Bst2BI CACGAG 2 cut(s) 336, 1012
Bst2UI CCWGG 4 cut(s) 646, 900, 1075, 1349
Bst4CI ACNGT 4 cut(s) 232, 851, 1323, 1366
BstAPI GCANNNNNTGC 3 cut(s) 322, 614, 1748
BstAUI TGTACA 1 cut(s) 2302
BstC8I GCNNGC 3 cut(s) 81, 396, 896
BstDEI CTNAG 2 cut(s) 1572, 1902
BstDSI CCRYGG 2 cut(s) 1314, 1983
BstF5I GGATG 5 cut(s) 481, 1059, 1393, 1732, 2245
BstFNI CGCG 2 cut(s) 635, 1621
BstHHI GCGC 2 cut(s) 91, 2074
BstKTI GATC 7 cut(s) 148, 220, 643, 967, 1261, 1772, 2170
BstMAI GTCTC 2 cut(s) 1514, 2193
BstMBI GATC 7 cut(s) 145, 217, 640, 964, 1258, 1769, 2167
BstMCI CGRYCG 3 cut(s) 197, 850, 876
BstMWI GCNNNNNNNGC 8 cut(s) 322, 614, 900, 969, 1148, 1353, 1748, 2069
BstNI CCWGG 4 cut(s) 646, 900, 1075, 1349
BstSCI CCNGG 7 cut(s) 644, 898, 1000, 1073, 1347, 1695, 2257
BstSLI GKGCMC 1 cut(s) 568
BstUI CGCG 2 cut(s) 635, 1621
BstX2I RGATCY 1 cut(s) 1769
BstYI RGATCY 1 cut(s) 1769
BstZI CGGCCG 1 cut(s) 873
BsuI GTATCC 1 cut(s) 244
BsuRI GGCC 6 cut(s) 5, 59, 875, 1347, 1356, 2231
BtgI CCRYGG 2 cut(s) 1314, 1983
BtgZI GCGATG 2 cut(s) 193, 562
BtsCI GGATG 5 cut(s) 481, 1059, 1393, 1732, 2245
BtsI GCAGTG 1 cut(s) 1126
BtsIMutI CAGTG 4 cut(s) 228, 608, 1126, 2309
BveI ACCTGC 1 cut(s) 2276
Cac8I GCNNGC 3 cut(s) 81, 396, 896
CciI TCATGA 1 cut(s) 1582
CfoI GCGC 2 cut(s) 91, 2074
Cfr10I RCCGGY 2 cut(s) 875, 888
Cfr13I GGNCC 4 cut(s) 1162, 1831, 1894, 2261
CseI GACGC 1 cut(s) 2024
Csp6I GTAC 8 cut(s) 261, 360, 1133, 1362, 1576, 1808, 1840, 2303
CviQI GTAC 8 cut(s) 261, 360, 1133, 1362, 1576, 1808, 1840, 2303
DdeI CTNAG 2 cut(s) 1572, 1902
DpnI GATC 7 cut(s) 147, 219, 642, 966, 1260, 1771, 2169
DpnII GATC 7 cut(s) 145, 217, 640, 964, 1258, 1769, 2167
DraI TTTAAA 2 cut(s) 1213, 2085
EaeI YGGCCR 3 cut(s) 57, 873, 1345
EagI CGGCCG 1 cut(s) 873
Ecl136II GAGCTC 1 cut(s) 1652
EclXI CGGCCG 1 cut(s) 873
Eco130I CCWWGG 3 cut(s) 436, 1357, 1983
Eco147I AGGCCT 1 cut(s) 2231
Eco24I GRGCYC 1 cut(s) 1654
Eco31I GGTCTC 1 cut(s) 1514
Eco32I GATATC 1 cut(s) 1702
Eco47I GGWCC 4 cut(s) 1162, 1831, 1894, 2261
Eco52I CGGCCG 1 cut(s) 873
Eco53kI GAGCTC 1 cut(s) 1652
Eco57I CTGAAG 1 cut(s) 2188
Eco88I CYCGRG 1 cut(s) 539
EcoICRI GAGCTC 1 cut(s) 1652
EcoRI GAATTC 2 cut(s) 200, 1338
EcoRII CCWGG 4 cut(s) 644, 898, 1073, 1347
EcoRV GATATC 1 cut(s) 1702
EcoT14I CCWWGG 3 cut(s) 436, 1357, 1983
EcoT38I GRGCYC 1 cut(s) 1654
ErhI CCWWGG 3 cut(s) 436, 1357, 1983
FaqI GGGAC 2 cut(s) 883, 1774
FbaI TGATCA 3 cut(s) 217, 1258, 2167
FblI GTMKAC 2 cut(s) 846, 1634
FokI GGATG 5 cut(s) 488, 1046, 1400, 1739, 2252
FriOI GRGCYC 1 cut(s) 1654
FspI TGCGCA 1 cut(s) 2073
GlaI GCGC 2 cut(s) 90, 2073
GsuI CTGGAG 1 cut(s) 1668
HaeIII GGCC 6 cut(s) 5, 59, 875, 1347, 1356, 2231
HapII CCGG 7 cut(s) 197, 755, 876, 889, 1001, 1696, 2259
HgaI GACGC 1 cut(s) 2024
HhaI GCGC 2 cut(s) 91, 2074
Hin6I GCGC 2 cut(s) 89, 2072
HinP1I GCGC 2 cut(s) 89, 2072
HincII GTYRAC 2 cut(s) 847, 1426
HindII GTYRAC 2 cut(s) 847, 1426
HinfI GANTC 6 cut(s) 22, 482, 542, 650, 785, 1465
HpaI GTTAAC 1 cut(s) 1426
HpaII CCGG 7 cut(s) 197, 755, 876, 889, 1001, 1696, 2259
HphI GGTGA 8 cut(s) 155, 196, 259, 271, 791, 987, 1268, 2247
Hpy166II GTNNAC 8 cut(s) 383, 587, 847, 1369, 1426, 1635, 1710, 1879
Hpy188I TCNGA 3 cut(s) 1037, 2207, 2299
Hpy188III TCNNGA 4 cut(s) 515, 1583, 1767, 2012
Hpy8I GTNNAC 8 cut(s) 383, 587, 847, 1369, 1426, 1635, 1710, 1879
HpyAV CCTTC 6 cut(s) 274, 685, 902, 1985, 2091, 2189
HpyCH4III ACNGT 4 cut(s) 232, 851, 1323, 1366
HpyCH4IV ACGT 2 cut(s) 447, 2104
HpyF10VI GCNNNNNNNGC 8 cut(s) 322, 614, 900, 969, 1148, 1353, 1748, 2069
HpyF3I CTNAG 2 cut(s) 1572, 1902
HpySE526I ACGT 2 cut(s) 447, 2104
HspAI GCGC 2 cut(s) 89, 2072
KpnI GGTACC 1 cut(s) 264
Ksp22I TGATCA 3 cut(s) 217, 1258, 2167
KspAI GTTAAC 1 cut(s) 1426
Kzo9I GATC 7 cut(s) 145, 217, 640, 964, 1258, 1769, 2167
LmnI GCTCC 4 cut(s) 403, 1300, 1649, 1987
LweI GCATC 3 cut(s) 1068, 1717, 2152
MaeII ACGT 2 cut(s) 447, 2104
MaeIII GTNAC 5 cut(s) 28, 61, 344, 502, 878
MalI GATC 7 cut(s) 147, 219, 642, 966, 1260, 1771, 2169
MboI GATC 7 cut(s) 145, 217, 640, 964, 1258, 1769, 2167
MboII GAAGA 4 cut(s) 491, 1242, 2057, 2283
MflI RGATCY 1 cut(s) 1769
MhlI GDGCHC 2 cut(s) 568, 1654
MlsI TGGCCA 1 cut(s) 1347
MluNI TGGCCA 1 cut(s) 1347
MlyI GAGTC 2 cut(s) 551, 794
MmeI TCCRAC 2 cut(s) 1105, 2200
Mox20I TGGCCA 1 cut(s) 1347
MroXI GAANNNNTTC 1 cut(s) 1567
MscI TGGCCA 1 cut(s) 1347
MseI TTAA 9 cut(s) 621, 765, 1026, 1212, 1425, 1452, 1479, 1497, 2084
MslI CAYNNNNRTG 2 cut(s) 53, 1488
Msp20I TGGCCA 1 cut(s) 1347
MspA1I CMGCKG 1 cut(s) 375
MspI CCGG 7 cut(s) 197, 755, 876, 889, 1001, 1696, 2259
MspR9I CCNGG 7 cut(s) 646, 900, 1002, 1075, 1349, 1697, 2259
Mva1269I GAATGC 1 cut(s) 950
MvaI CCWGG 4 cut(s) 646, 900, 1075, 1349
MvnI CGCG 2 cut(s) 635, 1621
MwoI GCNNNNNNNGC 8 cut(s) 322, 614, 900, 969, 1148, 1353, 1748, 2069
NciI CCSGG 3 cut(s) 1002, 1697, 2259
NcoI CCATGG 1 cut(s) 1983
NdeII GATC 7 cut(s) 145, 217, 640, 964, 1258, 1769, 2167
NheI GCTAGC 1 cut(s) 79
NlaIV GGNNCC 2 cut(s) 262, 1833
NmeAIII GCCGAG 1 cut(s) 1649
NsbI TGCGCA 1 cut(s) 2073
PagI TCATGA 1 cut(s) 1582
PasI CCCWGGG 1 cut(s) 645
PceI AGGCCT 1 cut(s) 2231
PcsI WCGNNNNNNNCGW 1 cut(s) 678
PctI GAATGC 1 cut(s) 950
PdmI GAANNNNTTC 1 cut(s) 1567
PfeI GAWTC 4 cut(s) 22, 482, 650, 1465
PfoI TCCNGGA 1 cut(s) 1000
PleI GAGTC 2 cut(s) 550, 793
PpsI GAGTC 2 cut(s) 550, 793
PshBI ATTAAT 1 cut(s) 1452
Psp124BI GAGCTC 1 cut(s) 1654
Psp1406I AACGTT 1 cut(s) 447
Psp6I CCWGG 4 cut(s) 644, 898, 1073, 1347
PspGI CCWGG 4 cut(s) 644, 898, 1073, 1347
PspN4I GGNNCC 2 cut(s) 262, 1833
PspPI GGNCC 4 cut(s) 1162, 1831, 1894, 2261
PsrI GAACNNNNNNTAC 2 cut(s) 2272, 2304
PsuI RGATCY 1 cut(s) 1769
RsaI GTAC 8 cut(s) 262, 361, 1134, 1363, 1577, 1809, 1841, 2304
RsaNI GTAC 8 cut(s) 261, 360, 1133, 1362, 1576, 1808, 1840, 2303
RseI CAYNNNNRTG 2 cut(s) 53, 1488
SacI GAGCTC 1 cut(s) 1654
SalI GTCGAC 1 cut(s) 845
SaqAI TTAA 9 cut(s) 621, 765, 1026, 1212, 1425, 1452, 1479, 1497, 2084
Sau3AI GATC 7 cut(s) 145, 217, 640, 964, 1258, 1769, 2167
Sau96I GGNCC 4 cut(s) 1162, 1831, 1894, 2261
ScaI AGTACT 2 cut(s) 1134, 1841
SchI GAGTC 2 cut(s) 551, 794
ScrFI CCNGG 7 cut(s) 646, 900, 1002, 1075, 1349, 1697, 2259
SduI GDGCHC 2 cut(s) 568, 1654
SfaNI GCATC 3 cut(s) 1068, 1717, 2152
SfiI GGCCNNNNNGGCC 1 cut(s) 1353
SinI GGWCC 4 cut(s) 1162, 1831, 1894, 2261
SmiMI CAYNNNNRTG 2 cut(s) 53, 1488
SmlI CTYRAG 2 cut(s) 111, 2019
SmoI CTYRAG 2 cut(s) 111, 2019
SpeI ACTAGT 3 cut(s) 716, 812, 1129
SseBI AGGCCT 1 cut(s) 2231
SsiI CCGC 5 cut(s) 104, 375, 549, 552, 2126
SstI GAGCTC 1 cut(s) 1654
StuI AGGCCT 1 cut(s) 2231
StyD4I CCNGG 7 cut(s) 644, 898, 1000, 1073, 1347, 1695, 2257
StyI CCWWGG 3 cut(s) 436, 1357, 1983
TaaI ACNGT 4 cut(s) 232, 851, 1323, 1366
TaiI ACGT 2 cut(s) 450, 2107
TaqI TCGA 4 cut(s) 602, 846, 1336, 2146
TaqII GACCGA 1 cut(s) 1538
TatI WGTACW 5 cut(s) 1132, 1575, 1807, 1839, 2302
TauI GCSGC 4 cut(s) 378, 552, 555, 2129
TfiI GAWTC 4 cut(s) 22, 482, 650, 1465
Tru1I TTAA 9 cut(s) 621, 765, 1026, 1212, 1425, 1452, 1479, 1497, 2084
Tru9I TTAA 9 cut(s) 621, 765, 1026, 1212, 1425, 1452, 1479, 1497, 2084
TscAI CASTG 4 cut(s) 235, 615, 1126, 2316
TspGWI ACGGA 3 cut(s) 1331, 1443, 1575
TspRI CASTG 4 cut(s) 235, 615, 1126, 2316
VpaK11BI GGWCC 4 cut(s) 1162, 1831, 1894, 2261
VspI ATTAAT 1 cut(s) 1452
XapI RAATTY 8 cut(s) 200, 290, 991, 1338, 1527, 1547, 2086, 2182
XcmI CCANNNNNNNNNTGG 1 cut(s) 1071
XmiI GTMKAC 2 cut(s) 846, 1634
XmnI GAANNNNTTC 1 cut(s) 1567
ZrmI AGTACT 2 cut(s) 1134, 1841
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.