FvH4_6g39000

wall-associated receptor kinase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000052
Physical Location & Seq
Reverse (-)
30835583 .. 30838386
2804 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g39000.t1

Sequence Viewer

Length: 2133 bp
ATGGTGCCTGTTCTGTTTCTGCTTCATGTGATCACTCTGTTCTTGTGGCCTACGAGTACTAGTGCAAAAGCCGTAACTCTAGCAAAGCCTAAATGTACACCAAATTGCGGAGTTGTTCAAATCCCATATCCTTTTGGAATTGAAGAAGGTTGTTACATAGACTGGTTCCGAATCCAGTGTTACAACTTCACCGGCATTCCCACTCCCACACTTTGGTACCCTGAAAAGCAAATGAGCCTTGAGGTGCTCAATATTTCTGTTGAAGGCACACTAACGGTCAGGAGCCCCATTACCTTCCTTGATCCTATCTGTGGTTGTCCTTGGCCAAATAGTGGCCAACCAGCAAACTTGAGTGGAAGCCCGTTTGTCTTCTCCCAGAAAAACAGACTCGCTGTAATGGGATGCGGCGGTACCACCTGGATGACGCTCGACAACGGTTCAAGAGTTGCTAGCTGCCCCTCCGTCTGTGGTGATGGTGGCAAACTTCCGGATACTCTTGATAGGTGCAATGGTATTAACTGCTGCCAGATCAACACTCCTCCGGAGCTTACTGCCTTCAACTACACCTTTGAAGCATCAAACAAAACCACCCCTGGAACGGAAAGTTGCAAGTACGCATTTCTGGTAGACCAAGAGTCGTGGGTTTATGATTCTACCGGTCTTTCTTCCATCCAGAATGTTATGTCTATCCCTGTATTGCTCGATTGGAACTTGAATCGTTATTCAACTGTGCAAATATATGGAAGACATGATTGGACCAATGATTCGACCATGAACTGCACAAGTGCTCATCAATGTGTCTGCTCACGAGGTTATCAGGGAAACCCCTACCTTATCGATGGATGTCGAGACGTTGATGAATGCGAGGATCCAATTACTTGTGGTCCATTATGGCTTAAAGTGGCCATTCTAGTTATCAGCTGTGTTCTTGGATTATTGTTTCTACATGGTGGTACATGGTGGTCGTACAAAGTCATTAAGAAAAGGAAAAACATCAAGCGGAAGCAGAAATTTTTTAAGCAAAATGGTGGTTTATTGTTGCAGCAACAATCATCTTCTGGTGATCAAACTAGTATTGAAAAACTTAAATTGTTCCACTCGGAGGAATTAGAGAAAGCCACAGACGGTTTCAATGCAGATAGAATACTTGGTCGAGGAGGGCAAGGCACTGTTTATAAAGGAATGTTAGCAGATGGAAAAATCGTAGCAGTAAAGAAGTCCTTGTTAGCTAATGGAAGTGAATTGAGACAGTTCATCAATGAAATTGTCGTTCTTTCCCAAATTATCCACAGGAATGTGGTAAAACTCTGGGGTTGCTGCTTAGAGACGGAAGTTCCCCTTTTGGTTTATGAATTCATTCCCAACGGAACGCTTTCTCACTATATACAACACGAAAATGAGGACTTCCCACTTACATGGGGAATACGTCTACGAGTTGCTAAAGAAGTCGCAGGAGCTCTTTCCTATTTGCACTCAGCAGCTACTACTCCCATTTACCACCGCGATATCAAATCCTCTAACATACTCTTGGATGATAAGTATACAGTTAAAGTAGCAGATTTTGGGACTTCAAGATCAGTTTCCATCGACAAAACACACCTTACATTGTCACAAGTTCAAGGAACATTTGGTTATTTGGACCCAGAGTACTTCCAAACTAGCCAATTTACAGACAAAAGTGATGTTTACAGCTTCGGAGTGGTCCTTGCTGAGCTCTTGACCGGAAAAAAGCCAATTTTTCAGACCAAGTCACAAGAAACCATGAGCTTGTCACATTATTTCCTAGTATCTATGGAGGAGAATCGTTTGTCTGATATTCTTGATGCTCGAGTTATGAACAGTGAGAAAAAAGAGGTTATGGCAGTTGCTAACCTTGCTATGCGTTGTTTGAATATGAAGGGAAAAGAGCGTCCTGCTATGAAGGAAGTAGTAGCGGAATTGGAGGCAATATTTAAACTGCAAGGGGAAGACTACAATGTTCAACGAAACACTTCAGATGTTGGATATGTCCGAAGTGGAATAACTGAGGTTTGGGATGTTGGTTCTACATCAGTTTCGTCTTCTATGGTTACTGAATCTAGTGGTACAAGTTCATTCGATTTGCGACCACTGGTGTCTATCAAGACAGAGTGA

Protein Analysis

711

Amino Acids

78.99

Weight (kDa)

6.23

Isoelectric Point (pI)

36.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 32 - 93 1.4e-09 Wall-associated receptor kinase galacturonan-binding
Pkinase PF00069 378 - 645 3.9e-48 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 379 - 647 6.4e-48 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000052)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16090 AT1G16110 AT1G16120 AT1G16130 AT1G16150 AT1G16160 AT1G16260 AT1G16260 AT1G16260 AT1G79670 AT1G79670
fragaria_vesca FvH4_1g22960 FvH4_3g09860 FvH4_3g10284 FvH4_3g10284 FvH4_3g10540 FvH4_3g24040 FvH4_3g35290 FvH4_3g35290 FvH4_5g06860 FvH4_5g06940 FvH4_6g15920 FvH4_6g15920 FvH4_6g37660 FvH4_6g37670 FvH4_6g37691 FvH4_6g37700 FvH4_6g37710 FvH4_6g38990 FvH4_6g39000 FvH4_6g39020 FvH4_6g39020 FvH4_6g39020 FvH4_6g39021 FvH4_6g39030 FvH4_6g39030 FvH4_6g39031 FvH4_6g39032 FvH4_6g45200 FvH4_6g45200
malus_domestica MD08G1107900.v1.1 MD09G1145100.v1.1 MD09G1145200.v1.1 MD09G1145300.v1.1 MD09G1145400.v1.1 MD09G1145500.v1.1 MD17G1131600.v1.1 MD17G1131700.v1.1 MD17G1131900.v1.1 MD17G1132000.v1.1
prunus_persica Prupe.1G188400_v2.0.a1 Prupe.1G188700_v2.0.a1 Prupe.3G180500_v2.0.a1 Prupe.3G180600_v2.0.a1 Prupe.3G180700_v2.0.a1 Prupe.3G181000_v2.0.a1 Prupe.3G181100_v2.0.a1 Prupe.3G181100_v2.0.a1 Prupe.3G181200_v2.0.a1 Prupe.3G181200_v2.0.a1 Prupe.3G181400_v2.0.a1 Prupe.3G181500_v2.0.a1 Prupe.3G181600_v2.0.a1 Prupe.3G181800_v2.0.a1 Prupe.3G181900_v2.0.a1 Prupe.3G182000_v2.0.a1 Prupe.3G182100_v2.0.a1 Prupe.3G182200_v2.0.a1 Prupe.3G182300_v2.0.a1 Prupe.3G182400_v2.0.a1 Prupe.3G182500_v2.0.a1 Prupe.3G182600_v2.0.a1 Prupe.3G182700_v2.0.a1 Prupe.5G051200_v2.0.a1 Prupe.5G051300_v2.0.a1 Prupe.5G051400_v2.0.a1 Prupe.5G051500_v2.0.a1 Prupe.5G051600_v2.0.a1 Prupe.5G051600_v2.0.a1 Prupe.5G051800_v2.0.a1
pyrus_communis pycom09g06470 pycom09g06490 pycom09g06510 pycom09g06520 pycom09g06570 pycom09g06580 pycom17g12440 pycom17g12450 pycom17g12530
rosa_chinensis RchiOBHm_Chr2g0117481 RchiOBHm_Chr2g0128321 RchiOBHm_Chr2g0128331 RchiOBHm_Chr2g0128581 RchiOBHm_Chr2g0128591 RchiOBHm_Chr2g0150651 RchiOBHm_Chr2g0150661 RchiOBHm_Chr2g0150741 RchiOBHm_Chr2g0150781 RchiOBHm_Chr2g0152581 RchiOBHm_Chr2g0152591 RchiOBHm_Chr2g0152641 RchiOBHm_Chr2g0152661 RchiOBHm_Chr2g0152711 RchiOBHm_Chr2g0152731 RchiOBHm_Chr2g0152871 RchiOBHm_Chr2g0152881 RchiOBHm_Chr2g0152901 RchiOBHm_Chr2g0152921 RchiOBHm_Chr2g0152931 RchiOBHm_Chr2g0152941 RchiOBHm_Chr3g0469621 RchiOBHm_Chr3g0469631 RchiOBHm_Chr5g0015591 RchiOBHm_Chr5g0046061 RchiOBHm_Chr5g0047341 RchiOBHm_Chr5g0063341 RchiOBHm_Chr5g0063351 RchiOBHm_Chr6g0264381 RchiOBHm_Chr7g0191741 RchiOBHm_Chr7g0210751 RchiOBHm_Chr7g0221871 RchiOBHm_Chr7g0225671 RchiOBHm_Chr7g0225891 RchiOBHm_Chr7g0225901 RchiOBHm_Chr7g0225961 RchiOBHm_Chr7g0225971 RchiOBHm_Chr7g0234031 RchiOBHm_Chr7g0234041
rosa_laevigata RLG00000001780 RLG00000001784 RLG00000001785 RLG00000001788 RLG00000001789 RLG00000001793 RLG00000001794 RLG00000002941 RLG00000004430 RLG00000014259 RLG00000018349 RLG00000019001 RLG00000019005 RLG00000019011 RLG00000020503 RLG00000020507 RLG00000020648 RLG00000020649 RLG00000020651 RLG00000020652 RLG00000020653 RLG00000020655 RLG00000020656 RLG00000020657 RLG00000023668 RLG00000024331 RLG00000034386 RLG00000035624 RLG00000035625
rosa_multiflora Rmu_co8401977.1_g000001 Rmu_co8409989.1_g000001 Rmu_co8432067.1_g000001 Rmu_co8491011.1_g000001 Rmu_sc0000580.1_g000085 Rmu_sc0000740.1_g000012 Rmu_sc0000740.1_g000014 Rmu_sc0000837.1_g000041 Rmu_sc0000837.1_g000077 Rmu_sc0001552.1_g000008 Rmu_sc0001617.1_g000001 Rmu_sc0002082.1_g000006 Rmu_sc0002082.1_g000007 Rmu_sc0002082.1_g000022 Rmu_sc0002989.1_g000013 Rmu_sc0003064.1_g000011 Rmu_sc0003127.1_g000003 Rmu_sc0003127.1_g000014 Rmu_sc0003127.1_g000028 Rmu_sc0003127.1_g000032 Rmu_sc0003127.1_g000034 Rmu_sc0003127.1_g000035 Rmu_sc0003127.1_g000054 Rmu_sc0003127.1_g000055 Rmu_sc0003465.1_g000034 Rmu_sc0005223.1_g000021 Rmu_sc0005302.1_g000004 Rmu_sc0005378.1_g000005 Rmu_sc0005378.1_g000007 Rmu_sc0005378.1_g000017 Rmu_sc0005378.1_g000034 Rmu_sc0005378.1_g000039 Rmu_sc0005378.1_g000042 Rmu_sc0005378.1_g000056 Rmu_sc0005378.1_g000057 Rmu_sc0005378.1_g000058 Rmu_sc0006483.1_g000013 Rmu_sc0008775.1_g000006 Rmu_sc0008775.1_g000011 Rmu_sc0009104.1_g000010 Rmu_sc0009104.1_g000011 Rmu_sc0009104.1_g000020 Rmu_sc0010960.1_g000006 Rmu_sc0011737.1_g000002 Rmu_sc0011737.1_g000004 Rmu_sc0012875.1_g000003 Rmu_sc0013122.1_g000002 Rmu_sc0018944.1_g000002 Rmu_sc0020155.1_g000001 Rmu_sc0020156.1_g000001 Rmu_ssc0000233.1_g000012 Rmu_ssc0000233.1_g000013 Rmu_ssc0000233.1_g000030 Rmu_ssc0000233.1_g000044 Rmu_ssc0000233.1_g000047 Rmu_ssc0000233.1_g000052 Rmu_ssc0000233.1_g000054 Rmu_ssc0000233.1_g000055 Rmu_ssc0000233.1_g000080 Rmu_ssc0000233.1_g000082 Rmu_ssc0000233.1_g000087 Rmu_ssc0000233.1_g000094 Rmu_ssc0000480.1_g000060 Rmu_ssc0000480.1_g000061
rosa_roxburghii Rroxscaffold_1G00017360 Rroxscaffold_1G00017370 Rroxscaffold_1G00060880 Rroxscaffold_2G00095370 Rroxscaffold_2G00095420 Rroxscaffold_2G00095450 Rroxscaffold_2G00095460 Rroxscaffold_2G00095490 Rroxscaffold_2G00095560 Rroxscaffold_2G00095570 Rroxscaffold_2G00096960 Rroxscaffold_2G00097010 Rroxscaffold_2G00126500 Rroxscaffold_3G00233390 Rroxscaffold_3G00233580 Rroxscaffold_3G00263590 Rroxscaffold_6G00411660
rosa_rugosa Rorug01G0142700.1 Rorug01G0148600.1 Rorug02G0212800 Rorug02G0422400 Rorug02G0434700 Rorug02G0434800 Rorug02G0435000 Rorug02G0435200 Rorug02G0435300 Rorug02G0435400 Rorug02G0435700 Rorug02G0435800 Rorug02G0436200 Rorug02G0436300 Rorug03G0102800 Rorug04G0123600 Rorug04G0123700 Rorug04G0123800 Rorug04G0124000 Rorug04G0124000 Rorug04G0124500 Rorug04G0124700 Rorug04G0124900 Rorug05G0028600.1 Rorug05G0356100 Rorug05G0356800 Rorug06G0011900 Rorug07G0092900 Rorug07G0122800 Rorug07G0232500 Rorug07G0232600 Rorug07G0232700
rosa_samantha Rh1AG408900 Rh2AG332700 Rh2AG333400 Rh2AG482100 Rh2AG482200 Rh2AG482500 Rh2AG496000 Rh2AG496100 Rh2AG496200 Rh2AG496300 Rh2AG497100 Rh2AG497200 Rh2AG497400 Rh2BG280300 Rh2BG340500 Rh2BG494400 Rh2BG494900 Rh2BG507800 Rh2BG507900 Rh2BG508000 Rh2BG508100 Rh2BG508300 Rh2BG508500 Rh2BG508700 Rh2BG509200 Rh2BG512700 Rh2CG271900 Rh2CG319100 Rh2CG319400 Rh2CG357200 Rh2CG468400 Rh2CG468500 Rh2CG468800 Rh2CG482200 Rh2CG482300 Rh2CG482400 Rh2CG482500 Rh2CG483200 Rh2CG483300 Rh2CG483500 Rh2CG483600 Rh2DG294600 Rh2DG357100 Rh2DG357700 Rh2DG503400 Rh2DG504300 Rh2DG504900 Rh2DG505500 Rh2DG505900 Rh2DG519000 Rh2DG519100 Rh2DG519300 Rh2DG519400 Rh2DG520000 Rh2DG520200 Rh2DG520500 Rh2DG521000 Rh2DG524300 Rh3AG152400 Rh3AG334400 Rh3BG176100 Rh3CG167200 Rh3DG199400 Rh3DG199500 Rh5AG415900 Rh5BG430800 Rh5CG454300 Rh5DG444600 Rh6AG247500 Rh6AG247700 Rh7AG120600 Rh7AG369800 Rh7AG370800 Rh7AG468300 Rh7BG366400 Rh7CG125200 Rh7CG388700 Rh7CG389400 Rh7CG459600 Rh7DG123300 Rh7DG123400 Rh7DG123800 Rh7DG123900 Rh7DG377200
rosa_wichuraiana Rw0G004850 Rw0G004870 Rw0G013120 Rw1G013520 Rw2G026850 Rw2G026910 Rw2G027120 Rw2G039340 Rw2G039360 Rw2G039410 Rw2G039420 Rw2G039440 Rw2G039520 Rw2G040810 Rw2G040830 Rw2G040850 Rw2G040860 Rw2G040880 Rw2G041210 Rw2G041220 Rw2G041240 Rw2G041250 Rw3G014370 Rw5G010520 Rw5G039070 Rw6G021410 Rw6G021420 Rw7G010280 Rw7G021780 Rw7G031820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1176
Acc65I GGTACC 2 cut(s) 216, 410
AccB1I GGYRCC 3 cut(s) 4, 216, 410
AccB7I CCANNNNNTGG 2 cut(s) 213, 332
AccI GTMKAC 3 cut(s) 627, 1429, 1541
AccII CGCG 1 cut(s) 1503
AccIII TCCGGA 2 cut(s) 487, 541
AciI CCGC 6 cut(s) 108, 405, 408, 1000, 1501, 1934
AclWI GGATC 3 cut(s) 296, 863, 876
AcoI YGGCCR 3 cut(s) 323, 334, 903
AcsI RAATTY 2 cut(s) 1010, 1352
AcuI CTGAAG 1 cut(s) 1977
AfaI GTAC 9 cut(s) 58, 97, 218, 412, 614, 955, 968, 1649, 2086
AfiI CCNNNNNNNGG 6 cut(s) 107, 213, 311, 332, 598, 1102
AgeI ACCGGT 1 cut(s) 656
AhdI GACNNNNNGTC 1 cut(s) 634
AhlI ACTAGT 2 cut(s) 59, 1070
AjnI CCWGG 2 cut(s) 416, 592
AjuI GAANNNNNNNTTGG 2 cut(s) 736, 768
AluBI AGCT 9 cut(s) 453, 547, 921, 1229, 1457, 1481, 1692, 1714, 1767
AluI AGCT 9 cut(s) 453, 547, 921, 1229, 1457, 1481, 1692, 1714, 1767
Alw21I GWGCWC 4 cut(s) 249, 790, 1459, 1716
Alw26I GTCTC 3 cut(s) 843, 1240, 1319
AlwI GGATC 3 cut(s) 296, 863, 876
Ama87I CYCGRG 1 cut(s) 1827
Aor13HI TCCGGA 2 cut(s) 487, 541
AoxI GGCC 4 cut(s) 47, 323, 334, 903
ApeKI GCWGC 5 cut(s) 453, 522, 1042, 1317, 1478
ApoI RAATTY 2 cut(s) 1010, 1352
ArsI GACNNNNNNTTYG 2 cut(s) 748, 780
AsiGI ACCGGT 1 cut(s) 656
Asp700I GAANNNNTTC 3 cut(s) 1356, 1372, 1990
Asp718I GGTACC 2 cut(s) 216, 410
AspS9I GGNCC 4 cut(s) 756, 884, 1639, 1702
AsuHPI GGTGA 3 cut(s) 181, 482, 1073
AsuNHI GCTAGC 1 cut(s) 449
AvaI CYCGRG 1 cut(s) 1827
AvaII GGWCC 4 cut(s) 756, 884, 1639, 1702
BaeI ACNNNNGTAYC 2 cut(s) 200, 233
BalI TGGCCA 3 cut(s) 325, 336, 905
BamHI GGATCC 1 cut(s) 868
BanI GGYRCC 3 cut(s) 4, 216, 410
BanII GRGCYC 3 cut(s) 287, 1459, 1716
BauI CACGAG 1 cut(s) 807
BbsI GAAGAC 4 cut(s) 361, 751, 1974, 2052
Bbv12I GWGCWC 4 cut(s) 249, 790, 1459, 1716
BbvI GCAGC 5 cut(s) 440, 509, 1054, 1304, 1490
BccI CCATC 5 cut(s) 467, 677, 833, 1187, 1592
BceAI ACGGC 1 cut(s) 56
BciT130I CCWGG 2 cut(s) 418, 594
BciVI GTATCC 1 cut(s) 484
BclI TGATCA 2 cut(s) 30, 1063
BcoDI GTCTC 3 cut(s) 843, 1240, 1319
BcuI ACTAGT 2 cut(s) 59, 1070
BfaI CTAG 8 cut(s) 60, 80, 450, 911, 1071, 1659, 1784, 2079
BfuI GTATCC 1 cut(s) 484
BisI GCNGC 6 cut(s) 406, 454, 523, 1043, 1318, 1479
BlpI GCTNAGC 1 cut(s) 1710
BlsI GCNGC 6 cut(s) 407, 455, 524, 1044, 1319, 1480
BmcAI AGTACT 2 cut(s) 58, 1649
Bme1390I CCNGG 2 cut(s) 418, 594
Bme18I GGWCC 4 cut(s) 756, 884, 1639, 1702
BmeRI GACNNNNNGTC 1 cut(s) 634
BmeT110I CYCGRG 1 cut(s) 1827
BmgT120I GGNCC 4 cut(s) 756, 884, 1639, 1702
BmiI GGNNCC 7 cut(s) 6, 167, 218, 284, 412, 870, 1641
BmrFI CCNGG 2 cut(s) 418, 594
BmsI GCATC 3 cut(s) 392, 584, 1813
BmtI GCTAGC 1 cut(s) 453
BpiI GAAGAC 4 cut(s) 361, 751, 1974, 2052
Bpu1102I GCTNAGC 1 cut(s) 1710
BpuEI CTTGAG 2 cut(s) 260, 370
Bsa29I ATCGAT 1 cut(s) 837
BsaJI CCNNGG 2 cut(s) 320, 592
BsaWI WCCGGW 4 cut(s) 487, 541, 656, 1721
Bsc4I CCNNNNNNNGG 6 cut(s) 107, 213, 311, 332, 598, 1102
Bse118I RCCGGY 2 cut(s) 191, 656
Bse1I ACTGG 3 cut(s) 167, 175, 2115
Bse3DI GCAATG 1 cut(s) 514
BseAI TCCGGA 2 cut(s) 487, 541
BseBI CCWGG 2 cut(s) 418, 594
BseCI ATCGAT 1 cut(s) 837
BseDI CCNNGG 2 cut(s) 320, 592
BseGI GGATG 6 cut(s) 407, 426, 669, 848, 1537, 2041
BseLI CCNNNNNNNGG 6 cut(s) 107, 213, 311, 332, 598, 1102
BseMI GCAATG 1 cut(s) 514
BseMII CTCAG 3 cut(s) 1488, 1701, 2016
BseNI ACTGG 3 cut(s) 167, 175, 2115
BseRI GAGGAG 3 cut(s) 528, 1170, 1811
BseXI GCAGC 5 cut(s) 440, 509, 1054, 1304, 1490
BsgI GTGCAG 1 cut(s) 763
Bsh1236I CGCG 1 cut(s) 1503
BshFI GGCC 4 cut(s) 49, 325, 336, 905
BshNI GGYRCC 3 cut(s) 4, 216, 410
BshTI ACCGGT 1 cut(s) 656
BshVI ATCGAT 1 cut(s) 837
BsiHKAI GWGCWC 4 cut(s) 249, 790, 1459, 1716
BsiHKCI CYCGRG 1 cut(s) 1827
BsiSI CCGG 5 cut(s) 192, 488, 542, 657, 1722
BslFI GGGAC 1 cut(s) 1579
BslI CCNNNNNNNGG 6 cut(s) 107, 213, 311, 332, 598, 1102
BsmAI GTCTC 3 cut(s) 843, 1240, 1319
BsmBI CGTCTC 2 cut(s) 843, 1319
BsmFI GGGAC 1 cut(s) 1579
BsmI GAATGC 2 cut(s) 195, 866
BsnI GGCC 4 cut(s) 49, 325, 336, 905
BsoBI CYCGRG 1 cut(s) 1827
Bsp1286I GDGCHC 5 cut(s) 249, 287, 790, 1459, 1716
Bsp13I TCCGGA 2 cut(s) 487, 541
Bsp1407I TGTACA 1 cut(s) 95
Bsp143I GATC 6 cut(s) 30, 301, 528, 868, 1063, 1574
Bsp1720I GCTNAGC 1 cut(s) 1710
BspACI CCGC 6 cut(s) 108, 405, 408, 1000, 1501, 1934
BspANI GGCC 4 cut(s) 49, 325, 336, 905
BspCNI CTCAG 3 cut(s) 1487, 1702, 2017
BspDI ATCGAT 1 cut(s) 837
BspEI TCCGGA 2 cut(s) 487, 541
BspFNI CGCG 1 cut(s) 1503
BspLI GGNNCC 7 cut(s) 6, 167, 218, 284, 412, 870, 1641
BspOI GCTAGC 1 cut(s) 453
BspPI GGATC 3 cut(s) 296, 863, 876
BspT107I GGYRCC 3 cut(s) 4, 216, 410
BsrDI GCAATG 1 cut(s) 514
BsrFI RCCGGY 2 cut(s) 191, 656
BsrGI TGTACA 1 cut(s) 95
BsrI ACTGG 3 cut(s) 167, 175, 2115
BssAI RCCGGY 2 cut(s) 191, 656
BssECI CCNNGG 2 cut(s) 320, 592
BssMI GATC 6 cut(s) 30, 301, 528, 868, 1063, 1574
BssNAI GTATAC 1 cut(s) 1542
BssSI CACGAG 1 cut(s) 807
BssT1I CCWWGG 1 cut(s) 320
Bst1107I GTATAC 1 cut(s) 1542
Bst2BI CACGAG 1 cut(s) 807
Bst2UI CCWGG 2 cut(s) 418, 594
Bst4CI ACNGT 8 cut(s) 277, 437, 730, 1127, 1171, 1251, 1546, 1841
BstAUI TGTACA 1 cut(s) 95
BstC8I GCNNGC 1 cut(s) 451
BstDEI CTNAG 4 cut(s) 1321, 1474, 1710, 2025
BstF5I GGATG 6 cut(s) 407, 426, 669, 848, 1537, 2041
BstFNI CGCG 1 cut(s) 1503
BstKTI GATC 6 cut(s) 33, 304, 531, 871, 1066, 1577
BstMAI GTCTC 3 cut(s) 843, 1240, 1319
BstMBI GATC 6 cut(s) 30, 301, 528, 868, 1063, 1574
BstMWI GCNNNNNNNGC 1 cut(s) 1874
BstNI CCWGG 2 cut(s) 418, 594
BstSCI CCNGG 2 cut(s) 416, 592
BstUI CGCG 1 cut(s) 1503
BstV1I GCAGC 5 cut(s) 440, 509, 1054, 1304, 1490
BstV2I GAAGAC 4 cut(s) 361, 751, 1974, 2052
BstX2I RGATCY 1 cut(s) 868
BstXI CCANNNNNNTGG 1 cut(s) 1416
BstYI RGATCY 1 cut(s) 868
BstZ17I GTATAC 1 cut(s) 1542
Bsu15I ATCGAT 1 cut(s) 837
BsuI GTATCC 1 cut(s) 484
BsuRI GGCC 4 cut(s) 49, 325, 336, 905
BsuTUI ATCGAT 1 cut(s) 837
BtsCI GGATG 6 cut(s) 407, 426, 669, 848, 1537, 2041
BtsIMutI CAGTG 4 cut(s) 182, 1167, 1846, 2108
Cac8I GCNNGC 1 cut(s) 451
Cfr10I RCCGGY 2 cut(s) 191, 656
Cfr13I GGNCC 4 cut(s) 756, 884, 1639, 1702
ClaI ATCGAT 1 cut(s) 837
CseI GACGC 2 cut(s) 433, 1898
Csp6I GTAC 9 cut(s) 57, 96, 217, 411, 613, 954, 967, 1648, 2085
CspAI ACCGGT 1 cut(s) 656
CspCI CAANNNNNGTGG 2 cut(s) 620, 655
CviAII CATG 7 cut(s) 26, 749, 772, 947, 957, 1416, 1762
CviQI GTAC 9 cut(s) 57, 96, 217, 411, 613, 954, 967, 1648, 2085
DdeI CTNAG 4 cut(s) 1321, 1474, 1710, 2025
DpnI GATC 6 cut(s) 32, 303, 530, 870, 1065, 1576
DpnII GATC 6 cut(s) 30, 301, 528, 868, 1063, 1574
DraI TTTAAA 1 cut(s) 1954
DriI GACNNNNNGTC 1 cut(s) 634
EaeI YGGCCR 3 cut(s) 323, 334, 903
Eam1105I GACNNNNNGTC 1 cut(s) 634
Ecl136II GAGCTC 2 cut(s) 1457, 1714
Eco130I CCWWGG 1 cut(s) 320
Eco24I GRGCYC 3 cut(s) 287, 1459, 1716
Eco32I GATATC 1 cut(s) 1507
Eco47I GGWCC 4 cut(s) 756, 884, 1639, 1702
Eco53kI GAGCTC 2 cut(s) 1457, 1714
Eco57I CTGAAG 1 cut(s) 1977
Eco88I CYCGRG 1 cut(s) 1827
EcoICRI GAGCTC 2 cut(s) 1457, 1714
EcoRI GAATTC 1 cut(s) 1352
EcoRII CCWGG 2 cut(s) 416, 592
EcoRV GATATC 1 cut(s) 1507
EcoT14I CCWWGG 1 cut(s) 320
EcoT38I GRGCYC 3 cut(s) 287, 1459, 1716
ErhI CCWWGG 1 cut(s) 320
Esp3I CGTCTC 2 cut(s) 843, 1319
FaeI CATG 7 cut(s) 29, 752, 775, 950, 960, 1419, 1765
FalI AAGNNNNNCTT 4 cut(s) 1205, 1237, 1323, 1355
FaqI GGGAC 1 cut(s) 1579
FatI CATG 7 cut(s) 25, 748, 771, 946, 956, 1415, 1761
FbaI TGATCA 2 cut(s) 30, 1063
FblI GTMKAC 3 cut(s) 627, 1429, 1541
Fnu4HI GCNGC 6 cut(s) 406, 454, 523, 1043, 1318, 1479
FokI GGATG 6 cut(s) 414, 433, 656, 855, 1544, 2048
FriOI GRGCYC 3 cut(s) 287, 1459, 1716
Fsp4HI GCNGC 6 cut(s) 406, 454, 523, 1043, 1318, 1479
FspBI CTAG 8 cut(s) 60, 80, 450, 911, 1071, 1659, 1784, 2079
GluI GCNGC 6 cut(s) 406, 454, 523, 1043, 1318, 1479
HaeIII GGCC 4 cut(s) 49, 325, 336, 905
HapII CCGG 5 cut(s) 192, 488, 542, 657, 1722
HgaI GACGC 2 cut(s) 433, 1898
Hin1II CATG 7 cut(s) 29, 752, 775, 950, 960, 1419, 1765
HinfI GANTC 8 cut(s) 171, 387, 635, 650, 715, 764, 1801, 2075
HpaII CCGG 5 cut(s) 192, 488, 542, 657, 1722
HphI GGTGA 3 cut(s) 181, 482, 1073
Hpy166II GTNNAC 5 cut(s) 98, 628, 1430, 1542, 1687
Hpy188I TCNGA 7 cut(s) 170, 1102, 1697, 1743, 1813, 1996, 2012
Hpy8I GTNNAC 5 cut(s) 98, 628, 1430, 1542, 1687
HpyAV CCTTC 6 cut(s) 140, 257, 304, 565, 1891, 1915
HpyCH4III ACNGT 8 cut(s) 277, 437, 730, 1127, 1171, 1251, 1546, 1841
HpyCH4IV ACGT 2 cut(s) 852, 1426
HpyCH4V TGCA 9 cut(s) 65, 507, 609, 733, 780, 1042, 1136, 1471, 1960
HpyF10VI GCNNNNNNNGC 1 cut(s) 1874
HpyF3I CTNAG 4 cut(s) 1321, 1474, 1710, 2025
HpySE526I ACGT 2 cut(s) 852, 1426
Hsp92II CATG 7 cut(s) 29, 752, 775, 950, 960, 1419, 1765
Kpn2I TCCGGA 2 cut(s) 487, 541
KpnI GGTACC 2 cut(s) 220, 414
Ksp22I TGATCA 2 cut(s) 30, 1063
Kzo9I GATC 6 cut(s) 30, 301, 528, 868, 1063, 1574
LmnI GCTCC 3 cut(s) 282, 544, 1454
Lsp1109I GCAGC 5 cut(s) 440, 509, 1054, 1304, 1490
LweI GCATC 3 cut(s) 392, 584, 1813
MaeI CTAG 8 cut(s) 60, 80, 450, 911, 1071, 1659, 1784, 2079
MaeII ACGT 2 cut(s) 852, 1426
MaeIII GTNAC 7 cut(s) 73, 152, 179, 1608, 1749, 1770, 2068
MalI GATC 6 cut(s) 32, 303, 530, 870, 1065, 1576
MboI GATC 6 cut(s) 30, 301, 528, 868, 1063, 1574
MboII GAAGA 7 cut(s) 155, 361, 657, 756, 1047, 1979, 2052
MflI RGATCY 1 cut(s) 868
MhlI GDGCHC 5 cut(s) 249, 287, 790, 1459, 1716
MlsI TGGCCA 3 cut(s) 325, 336, 905
MluNI TGGCCA 3 cut(s) 325, 336, 905
MlyI GAGTC 2 cut(s) 381, 644
MmeI TCCRAC 1 cut(s) 1981
Mox20I TGGCCA 3 cut(s) 325, 336, 905
MroI TCCGGA 2 cut(s) 487, 541
MroXI GAANNNNTTC 3 cut(s) 1356, 1372, 1990
MscI TGGCCA 3 cut(s) 325, 336, 905
MseI TTAA 7 cut(s) 516, 897, 978, 1017, 1086, 1548, 1953
MslI CAYNNNNRTG 5 cut(s) 419, 795, 1293, 1395, 1414
Msp20I TGGCCA 3 cut(s) 325, 336, 905
MspA1I CMGCKG 1 cut(s) 921
MspI CCGG 5 cut(s) 192, 488, 542, 657, 1722
MspR9I CCNGG 2 cut(s) 418, 594
Mva1269I GAATGC 2 cut(s) 195, 866
MvaI CCWGG 2 cut(s) 418, 594
MvnI CGCG 1 cut(s) 1503
MwoI GCNNNNNNNGC 1 cut(s) 1874
NdeII GATC 6 cut(s) 30, 301, 528, 868, 1063, 1574
NheI GCTAGC 1 cut(s) 449
NlaIII CATG 7 cut(s) 29, 752, 775, 950, 960, 1419, 1765
NlaIV GGNNCC 7 cut(s) 6, 167, 218, 284, 412, 870, 1641
NmuCI GTSAC 3 cut(s) 1608, 1749, 1770
PaeR7I CTCGAG 1 cut(s) 1827
PctI GAATGC 2 cut(s) 195, 866
PdmI GAANNNNTTC 3 cut(s) 1356, 1372, 1990
PfeI GAWTC 6 cut(s) 171, 650, 715, 764, 1801, 2075
PflFI GACNNNGTC 1 cut(s) 1747
PflMI CCANNNNNTGG 2 cut(s) 213, 332
PinAI ACCGGT 1 cut(s) 656
PkrI GCNGC 6 cut(s) 407, 455, 524, 1044, 1319, 1480
PleI GAGTC 2 cut(s) 381, 643
PpsI GAGTC 2 cut(s) 381, 643
PsiI TTATAA 1 cut(s) 1176
Psp124BI GAGCTC 2 cut(s) 1459, 1716
Psp6I CCWGG 2 cut(s) 416, 592
PspGI CCWGG 2 cut(s) 416, 592
PspN4I GGNNCC 7 cut(s) 6, 167, 218, 284, 412, 870, 1641
PspPI GGNCC 4 cut(s) 756, 884, 1639, 1702
PspXI VCTCGAGB 1 cut(s) 1827
PsuI RGATCY 1 cut(s) 868
PsyI GACNNNGTC 1 cut(s) 1747
PvuII CAGCTG 1 cut(s) 921
RsaI GTAC 9 cut(s) 58, 97, 218, 412, 614, 955, 968, 1649, 2086
RsaNI GTAC 9 cut(s) 57, 96, 217, 411, 613, 954, 967, 1648, 2085
RseI CAYNNNNRTG 5 cut(s) 419, 795, 1293, 1395, 1414
SacI GAGCTC 2 cut(s) 1459, 1716
SaqAI TTAA 7 cut(s) 516, 897, 978, 1017, 1086, 1548, 1953
SatI GCNGC 6 cut(s) 406, 454, 523, 1043, 1318, 1479
Sau3AI GATC 6 cut(s) 30, 301, 528, 868, 1063, 1574
Sau96I GGNCC 4 cut(s) 756, 884, 1639, 1702
ScaI AGTACT 2 cut(s) 58, 1649
SchI GAGTC 2 cut(s) 381, 644
ScrFI CCNGG 2 cut(s) 418, 594
SduI GDGCHC 5 cut(s) 249, 287, 790, 1459, 1716
SfaNI GCATC 3 cut(s) 392, 584, 1813
Sfr274I CTCGAG 1 cut(s) 1827
SinI GGWCC 4 cut(s) 756, 884, 1639, 1702
SlaI CTCGAG 1 cut(s) 1827
SmiMI CAYNNNNRTG 5 cut(s) 419, 795, 1293, 1395, 1414
SmlI CTYRAG 3 cut(s) 239, 349, 1827
SmoI CTYRAG 3 cut(s) 239, 349, 1827
SpeI ACTAGT 2 cut(s) 59, 1070
SsiI CCGC 6 cut(s) 108, 405, 408, 1000, 1501, 1934
SspI AATATT 2 cut(s) 253, 1950
SspMI CTAG 8 cut(s) 60, 80, 450, 911, 1071, 1659, 1784, 2079
SstI GAGCTC 2 cut(s) 1459, 1716
StyD4I CCNGG 2 cut(s) 416, 592
StyI CCWWGG 1 cut(s) 320
TaaI ACNGT 8 cut(s) 277, 437, 730, 1127, 1171, 1251, 1546, 1841
TaiI ACGT 2 cut(s) 855, 1429
TaqI TCGA 9 cut(s) 429, 702, 767, 837, 847, 1153, 1587, 1828, 2097
TatI WGTACW 3 cut(s) 56, 95, 1647
TauI GCSGC 1 cut(s) 408
TfiI GAWTC 6 cut(s) 171, 650, 715, 764, 1801, 2075
Tru1I TTAA 7 cut(s) 516, 897, 978, 1017, 1086, 1548, 1953
Tru9I TTAA 7 cut(s) 516, 897, 978, 1017, 1086, 1548, 1953
TscAI CASTG 4 cut(s) 182, 1174, 1846, 2115
TseFI GTSAC 3 cut(s) 1608, 1749, 1770
TseI GCWGC 5 cut(s) 453, 522, 1042, 1317, 1478
Tsp45I GTSAC 3 cut(s) 1608, 1749, 1770
TspGWI ACGGA 4 cut(s) 451, 614, 1343, 1380
TspRI CASTG 4 cut(s) 182, 1174, 1846, 2115
Tth111I GACNNNGTC 1 cut(s) 1747
Van91I CCANNNNNTGG 2 cut(s) 213, 332
VpaK11BI GGWCC 4 cut(s) 756, 884, 1639, 1702
XapI RAATTY 2 cut(s) 1010, 1352
XhoI CTCGAG 1 cut(s) 1827
XmiI GTMKAC 3 cut(s) 627, 1429, 1541
XmnI GAANNNNTTC 3 cut(s) 1356, 1372, 1990
XspI CTAG 8 cut(s) 60, 80, 450, 911, 1071, 1659, 1784, 2079
ZrmI AGTACT 2 cut(s) 58, 1649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.