Rroxscaffold_6G00411660

Wall-associated receptor kinase galacturonan-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000052
Physical Location & Seq
Reverse (-)
34248834 .. 34253597
4764 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00411660.1

Sequence Viewer

Length: 1041 bp
ATGCAATGGTTAGTTCAGCACATGATTTTCATTCTATTGTTATATAAATGGAACATAAGTACAGCATCATCATCACCACTGAAGATAGCGAAGAAGAACTGTACATCGCAGTGCGGAGGTGTTAGTATCCCATATCCGTTTGGGATTGGACCTAATAACGATTGTTATTTTGACTCGTGGTACGAAATAGAATGCAACCTTTCTGTTCCAGTAGCGAAGCCGTTCTTGAGGCGTCTACAACTGGAGGTGCTGAATATTTCTGTTGAAAACGACACGCTTCAGGTTCCGAGCCCTATCACTTACTTTAGCTGCAAGGGGAAGCAATCTCTGCCGGCGCCAAATCTGACGGGAAGCCCTTTTTTGTACTCTGTTGGATATAACAGTTTCGTTGCAGTCAGTTGTGACTTATTTGCCTCGCTGCGCACAGGTCCAAAGCACACTGTTGCTGGGTGCACGTCAGCTTGTTGGGCTTCAGAGGAATCAGAGGCATCTCTCGATTTTGACATGTGTCTGTATGGCTATAACTGTTGCCGGACTGACCTTTCCCAATATATCAACAATACTTTCAGCGTCGTACAAGAACAAGATGAAACAAGAGGAAATGCGACGGATTGCGAGGACTATGCGTTCCTGATTGACCAACAGTGGTTTGAGGACAATAAATCAGACTTCAGAGCTATCAAGGGTATGGACGTCGTTCCTGTGATGTTAGAATGGAGCTTAATCTTAGAAAATAATAAGTCATTAATCAAAAAATTTGAAGCACTCCCAAGGTCGGAAGACCAAAGGAGCCCGAATGATTCAACACCCTCATGCGACAAAGTTGATGCTGCTTCATTTTTCAATCGCACATCGTATACATGTTTTTGTCCGCCAGGCTTTGAAGGAAATCCCTACCTTCTCCAACCTTGTCGAGATATTGATGAATGCAAGGATGCTAATCCGTGCCAGGGTGATGATCTTTATACAATTACTACATGGAACATTAGTAATGCCAAATGTCGAGAACACCGTCGGGGGTCATATATGCTACTCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind Pkinase Pkinase_Tyr WAK

Protein Analysis

346

Amino Acids

39.08

Weight (kDa)

4.86

Isoelectric Point (pI)

58.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 34 - 95 1.3e-11 Wall-associated receptor kinase galacturonan-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000052)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16090 AT1G16110 AT1G16120 AT1G16130 AT1G16150 AT1G16160 AT1G16260 AT1G16260 AT1G16260 AT1G79670 AT1G79670
fragaria_vesca FvH4_1g22960 FvH4_3g09860 FvH4_3g10284 FvH4_3g10284 FvH4_3g10540 FvH4_3g24040 FvH4_3g35290 FvH4_3g35290 FvH4_5g06860 FvH4_5g06940 FvH4_6g15920 FvH4_6g15920 FvH4_6g37660 FvH4_6g37670 FvH4_6g37691 FvH4_6g37700 FvH4_6g37710 FvH4_6g38990 FvH4_6g39000 FvH4_6g39020 FvH4_6g39020 FvH4_6g39020 FvH4_6g39021 FvH4_6g39030 FvH4_6g39030 FvH4_6g39031 FvH4_6g39032 FvH4_6g45200 FvH4_6g45200
malus_domestica MD08G1107900.v1.1 MD09G1145100.v1.1 MD09G1145200.v1.1 MD09G1145300.v1.1 MD09G1145400.v1.1 MD09G1145500.v1.1 MD17G1131600.v1.1 MD17G1131700.v1.1 MD17G1131900.v1.1 MD17G1132000.v1.1
prunus_persica Prupe.1G188400_v2.0.a1 Prupe.1G188700_v2.0.a1 Prupe.3G180500_v2.0.a1 Prupe.3G180600_v2.0.a1 Prupe.3G180700_v2.0.a1 Prupe.3G181000_v2.0.a1 Prupe.3G181100_v2.0.a1 Prupe.3G181100_v2.0.a1 Prupe.3G181200_v2.0.a1 Prupe.3G181200_v2.0.a1 Prupe.3G181400_v2.0.a1 Prupe.3G181500_v2.0.a1 Prupe.3G181600_v2.0.a1 Prupe.3G181800_v2.0.a1 Prupe.3G181900_v2.0.a1 Prupe.3G182000_v2.0.a1 Prupe.3G182100_v2.0.a1 Prupe.3G182200_v2.0.a1 Prupe.3G182300_v2.0.a1 Prupe.3G182400_v2.0.a1 Prupe.3G182500_v2.0.a1 Prupe.3G182600_v2.0.a1 Prupe.3G182700_v2.0.a1 Prupe.5G051200_v2.0.a1 Prupe.5G051300_v2.0.a1 Prupe.5G051400_v2.0.a1 Prupe.5G051500_v2.0.a1 Prupe.5G051600_v2.0.a1 Prupe.5G051600_v2.0.a1 Prupe.5G051800_v2.0.a1
pyrus_communis pycom09g06470 pycom09g06490 pycom09g06510 pycom09g06520 pycom09g06570 pycom09g06580 pycom17g12440 pycom17g12450 pycom17g12530
rosa_chinensis RchiOBHm_Chr2g0117481 RchiOBHm_Chr2g0128321 RchiOBHm_Chr2g0128331 RchiOBHm_Chr2g0128581 RchiOBHm_Chr2g0128591 RchiOBHm_Chr2g0150651 RchiOBHm_Chr2g0150661 RchiOBHm_Chr2g0150741 RchiOBHm_Chr2g0150781 RchiOBHm_Chr2g0152581 RchiOBHm_Chr2g0152591 RchiOBHm_Chr2g0152641 RchiOBHm_Chr2g0152661 RchiOBHm_Chr2g0152711 RchiOBHm_Chr2g0152731 RchiOBHm_Chr2g0152871 RchiOBHm_Chr2g0152881 RchiOBHm_Chr2g0152901 RchiOBHm_Chr2g0152921 RchiOBHm_Chr2g0152931 RchiOBHm_Chr2g0152941 RchiOBHm_Chr3g0469621 RchiOBHm_Chr3g0469631 RchiOBHm_Chr5g0015591 RchiOBHm_Chr5g0046061 RchiOBHm_Chr5g0047341 RchiOBHm_Chr5g0063341 RchiOBHm_Chr5g0063351 RchiOBHm_Chr6g0264381 RchiOBHm_Chr7g0191741 RchiOBHm_Chr7g0210751 RchiOBHm_Chr7g0221871 RchiOBHm_Chr7g0225671 RchiOBHm_Chr7g0225891 RchiOBHm_Chr7g0225901 RchiOBHm_Chr7g0225961 RchiOBHm_Chr7g0225971 RchiOBHm_Chr7g0234031 RchiOBHm_Chr7g0234041
rosa_laevigata RLG00000001780 RLG00000001784 RLG00000001785 RLG00000001788 RLG00000001789 RLG00000001793 RLG00000001794 RLG00000002941 RLG00000004430 RLG00000014259 RLG00000018349 RLG00000019001 RLG00000019005 RLG00000019011 RLG00000020503 RLG00000020507 RLG00000020648 RLG00000020649 RLG00000020651 RLG00000020652 RLG00000020653 RLG00000020655 RLG00000020656 RLG00000020657 RLG00000023668 RLG00000024331 RLG00000034386 RLG00000035624 RLG00000035625
rosa_multiflora Rmu_co8401977.1_g000001 Rmu_co8409989.1_g000001 Rmu_co8432067.1_g000001 Rmu_co8491011.1_g000001 Rmu_sc0000580.1_g000085 Rmu_sc0000740.1_g000012 Rmu_sc0000740.1_g000014 Rmu_sc0000837.1_g000041 Rmu_sc0000837.1_g000077 Rmu_sc0001552.1_g000008 Rmu_sc0001617.1_g000001 Rmu_sc0002082.1_g000006 Rmu_sc0002082.1_g000007 Rmu_sc0002082.1_g000022 Rmu_sc0002989.1_g000013 Rmu_sc0003064.1_g000011 Rmu_sc0003127.1_g000003 Rmu_sc0003127.1_g000014 Rmu_sc0003127.1_g000028 Rmu_sc0003127.1_g000032 Rmu_sc0003127.1_g000034 Rmu_sc0003127.1_g000035 Rmu_sc0003127.1_g000054 Rmu_sc0003127.1_g000055 Rmu_sc0003465.1_g000034 Rmu_sc0005223.1_g000021 Rmu_sc0005302.1_g000004 Rmu_sc0005378.1_g000005 Rmu_sc0005378.1_g000007 Rmu_sc0005378.1_g000017 Rmu_sc0005378.1_g000034 Rmu_sc0005378.1_g000039 Rmu_sc0005378.1_g000042 Rmu_sc0005378.1_g000056 Rmu_sc0005378.1_g000057 Rmu_sc0005378.1_g000058 Rmu_sc0006483.1_g000013 Rmu_sc0008775.1_g000006 Rmu_sc0008775.1_g000011 Rmu_sc0009104.1_g000010 Rmu_sc0009104.1_g000011 Rmu_sc0009104.1_g000020 Rmu_sc0010960.1_g000006 Rmu_sc0011737.1_g000002 Rmu_sc0011737.1_g000004 Rmu_sc0012875.1_g000003 Rmu_sc0013122.1_g000002 Rmu_sc0018944.1_g000002 Rmu_sc0020155.1_g000001 Rmu_sc0020156.1_g000001 Rmu_ssc0000233.1_g000012 Rmu_ssc0000233.1_g000013 Rmu_ssc0000233.1_g000030 Rmu_ssc0000233.1_g000044 Rmu_ssc0000233.1_g000047 Rmu_ssc0000233.1_g000052 Rmu_ssc0000233.1_g000054 Rmu_ssc0000233.1_g000055 Rmu_ssc0000233.1_g000080 Rmu_ssc0000233.1_g000082 Rmu_ssc0000233.1_g000087 Rmu_ssc0000233.1_g000094 Rmu_ssc0000480.1_g000060 Rmu_ssc0000480.1_g000061
rosa_roxburghii Rroxscaffold_1G00017360 Rroxscaffold_1G00017370 Rroxscaffold_1G00060880 Rroxscaffold_2G00095370 Rroxscaffold_2G00095420 Rroxscaffold_2G00095450 Rroxscaffold_2G00095460 Rroxscaffold_2G00095490 Rroxscaffold_2G00095560 Rroxscaffold_2G00095570 Rroxscaffold_2G00096960 Rroxscaffold_2G00097010 Rroxscaffold_2G00126500 Rroxscaffold_3G00233390 Rroxscaffold_3G00233580 Rroxscaffold_3G00263590 Rroxscaffold_6G00411660
rosa_rugosa Rorug01G0142700.1 Rorug01G0148600.1 Rorug02G0212800 Rorug02G0422400 Rorug02G0434700 Rorug02G0434800 Rorug02G0435000 Rorug02G0435200 Rorug02G0435300 Rorug02G0435400 Rorug02G0435700 Rorug02G0435800 Rorug02G0436200 Rorug02G0436300 Rorug03G0102800 Rorug04G0123600 Rorug04G0123700 Rorug04G0123800 Rorug04G0124000 Rorug04G0124000 Rorug04G0124500 Rorug04G0124700 Rorug04G0124900 Rorug05G0028600.1 Rorug05G0356100 Rorug05G0356800 Rorug06G0011900 Rorug07G0092900 Rorug07G0122800 Rorug07G0232500 Rorug07G0232600 Rorug07G0232700
rosa_samantha Rh1AG408900 Rh2AG332700 Rh2AG333400 Rh2AG482100 Rh2AG482200 Rh2AG482500 Rh2AG496000 Rh2AG496100 Rh2AG496200 Rh2AG496300 Rh2AG497100 Rh2AG497200 Rh2AG497400 Rh2BG280300 Rh2BG340500 Rh2BG494400 Rh2BG494900 Rh2BG507800 Rh2BG507900 Rh2BG508000 Rh2BG508100 Rh2BG508300 Rh2BG508500 Rh2BG508700 Rh2BG509200 Rh2BG512700 Rh2CG271900 Rh2CG319100 Rh2CG319400 Rh2CG357200 Rh2CG468400 Rh2CG468500 Rh2CG468800 Rh2CG482200 Rh2CG482300 Rh2CG482400 Rh2CG482500 Rh2CG483200 Rh2CG483300 Rh2CG483500 Rh2CG483600 Rh2DG294600 Rh2DG357100 Rh2DG357700 Rh2DG503400 Rh2DG504300 Rh2DG504900 Rh2DG505500 Rh2DG505900 Rh2DG519000 Rh2DG519100 Rh2DG519300 Rh2DG519400 Rh2DG520000 Rh2DG520200 Rh2DG520500 Rh2DG521000 Rh2DG524300 Rh3AG152400 Rh3AG334400 Rh3BG176100 Rh3CG167200 Rh3DG199400 Rh3DG199500 Rh5AG415900 Rh5BG430800 Rh5CG454300 Rh5DG444600 Rh6AG247500 Rh6AG247700 Rh7AG120600 Rh7AG369800 Rh7AG370800 Rh7AG468300 Rh7BG366400 Rh7CG125200 Rh7CG388700 Rh7CG389400 Rh7CG459600 Rh7DG123300 Rh7DG123400 Rh7DG123800 Rh7DG123900 Rh7DG377200
rosa_wichuraiana Rw0G004850 Rw0G004870 Rw0G013120 Rw1G013520 Rw2G026850 Rw2G026910 Rw2G027120 Rw2G039340 Rw2G039360 Rw2G039410 Rw2G039420 Rw2G039440 Rw2G039520 Rw2G040810 Rw2G040830 Rw2G040850 Rw2G040860 Rw2G040880 Rw2G041210 Rw2G041220 Rw2G041240 Rw2G041250 Rw3G014370 Rw5G010520 Rw5G039070 Rw6G021410 Rw6G021420 Rw7G010280 Rw7G021780 Rw7G031820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 696
Acc16I TGCGCA 1 cut(s) 422
AccB1I GGYRCC 1 cut(s) 334
AccI GTMKAC 2 cut(s) 235, 857
AciI CCGC 2 cut(s) 114, 872
AcsI RAATTY 1 cut(s) 755
AcuI CTGAAG 4 cut(s) 101, 263, 456, 655
AcyI GRCGYC 3 cut(s) 232, 335, 693
AfaI GTAC 5 cut(s) 61, 103, 182, 365, 576
AfiI CCNNNNNNNGG 2 cut(s) 775, 950
AflIII ACRYGT 2 cut(s) 504, 860
AgsI TTSAA 5 cut(s) 266, 761, 804, 844, 884
AjiI CACGTC 1 cut(s) 456
AjnI CCWGG 2 cut(s) 874, 948
AloI GAACNNNNNNTCC 2 cut(s) 611, 643
AluBI AGCT 4 cut(s) 309, 461, 677, 720
AluI AGCT 4 cut(s) 309, 461, 677, 720
Alw21I GWGCWC 1 cut(s) 455
Alw44I GTGCAC 1 cut(s) 451
ApaLI GTGCAC 1 cut(s) 451
ApeKI GCWGC 3 cut(s) 309, 418, 830
ApoI RAATTY 1 cut(s) 755
AseI ATTAAT 1 cut(s) 746
Asp700I GAANNNNTTC 1 cut(s) 221
AspLEI GCGC 2 cut(s) 337, 423
AspS9I GGNCC 2 cut(s) 149, 428
AsuHPI GGTGA 2 cut(s) 66, 965
AvaII GGWCC 2 cut(s) 149, 428
BaeGI GKGCMC 1 cut(s) 455
BanI GGYRCC 1 cut(s) 334
BanII GRGCYC 2 cut(s) 293, 794
BauI CACGAG 1 cut(s) 175
BbsI GAAGAC 1 cut(s) 786
Bbv12I GWGCWC 1 cut(s) 455
BbvI GCAGC 3 cut(s) 296, 405, 817
BceAI ACGGC 1 cut(s) 205
BcgI CGANNNNNNTGC 2 cut(s) 605, 639
BciT130I CCWGG 2 cut(s) 876, 950
BciVI GTATCC 1 cut(s) 137
BfoI RGCGCY 1 cut(s) 338
BfuI GTATCC 1 cut(s) 137
BisI GCNGC 3 cut(s) 310, 419, 831
BlsI GCNGC 3 cut(s) 311, 420, 832
Bme1390I CCNGG 2 cut(s) 876, 950
Bme18I GGWCC 2 cut(s) 149, 428
BmgBI CACGTC 1 cut(s) 456
BmgT120I GGNCC 2 cut(s) 149, 428
BmiI GGNNCC 3 cut(s) 285, 336, 791
BmrFI CCNGG 2 cut(s) 876, 950
BmsI GCATC 4 cut(s) 74, 497, 817, 925
BoxI GACNNNNGTC 1 cut(s) 507
BpiI GAAGAC 1 cut(s) 786
BpmI CTGGAG 1 cut(s) 263
BpuEI CTTGAG 1 cut(s) 247
BsaBI GATNNNNATC 1 cut(s) 939
BsaHI GRCGYC 3 cut(s) 232, 335, 693
BsaJI CCNNGG 2 cut(s) 770, 949
Bsc4I CCNNNNNNNGG 2 cut(s) 775, 950
Bse118I RCCGGY 1 cut(s) 331
Bse1I ACTGG 2 cut(s) 209, 246
Bse3DI GCAATG 1 cut(s) 11
Bse8I GATNNNNATC 1 cut(s) 939
BseBI CCWGG 2 cut(s) 876, 950
BseDI CCNNGG 2 cut(s) 770, 949
BseGI GGATG 1 cut(s) 940
BseJI GATNNNNATC 1 cut(s) 939
BseLI CCNNNNNNNGG 2 cut(s) 775, 950
BseMI GCAATG 1 cut(s) 11
BseNI ACTGG 2 cut(s) 209, 246
BseSI GKGCMC 1 cut(s) 455
BseXI GCAGC 3 cut(s) 296, 405, 817
BseYI CCCAGC 1 cut(s) 446
BshNI GGYRCC 1 cut(s) 334
BsiHKAI GWGCWC 1 cut(s) 455
BsiSI CCGG 2 cut(s) 332, 532
BslI CCNNNNNNNGG 2 cut(s) 775, 950
BsmI GAATGC 2 cut(s) 197, 932
Bsp1286I GDGCHC 3 cut(s) 293, 455, 794
Bsp1407I TGTACA 1 cut(s) 101
Bsp143I GATC 1 cut(s) 958
BspACI CCGC 2 cut(s) 114, 872
BspLI GGNNCC 3 cut(s) 285, 336, 791
BspT107I GGYRCC 1 cut(s) 334
BsrDI GCAATG 1 cut(s) 11
BsrFI RCCGGY 1 cut(s) 331
BsrGI TGTACA 1 cut(s) 101
BsrI ACTGG 2 cut(s) 209, 246
BssAI RCCGGY 1 cut(s) 331
BssECI CCNNGG 2 cut(s) 770, 949
BssMI GATC 1 cut(s) 958
BssNAI GTATAC 1 cut(s) 858
BssNI GRCGYC 3 cut(s) 232, 335, 693
BssSI CACGAG 1 cut(s) 175
BssT1I CCWWGG 1 cut(s) 770
Bst1107I GTATAC 1 cut(s) 858
Bst2BI CACGAG 1 cut(s) 175
Bst2UI CCWGG 2 cut(s) 876, 950
Bst4CI ACNGT 6 cut(s) 101, 383, 442, 527, 645, 1013
BstACI GRCGYC 3 cut(s) 232, 335, 693
BstAPI GCANNNNNTGC 1 cut(s) 328
BstAUI TGTACA 1 cut(s) 101
BstC8I GCNNGC 1 cut(s) 333
BstDEI CTNAG 1 cut(s) 727
BstF5I GGATG 1 cut(s) 940
BstH2I RGCGCY 1 cut(s) 338
BstHHI GCGC 2 cut(s) 337, 423
BstKTI GATC 1 cut(s) 961
BstMBI GATC 1 cut(s) 958
BstMWI GCNNNNNNNGC 2 cut(s) 328, 467
BstNI CCWGG 2 cut(s) 876, 950
BstNSI RCATGY 2 cut(s) 508, 864
BstPAI GACNNNNGTC 1 cut(s) 507
BstSCI CCNGG 2 cut(s) 874, 948
BstSLI GKGCMC 1 cut(s) 455
BstV1I GCAGC 3 cut(s) 296, 405, 817
BstV2I GAAGAC 1 cut(s) 786
BstZ17I GTATAC 1 cut(s) 858
BsuI GTATCC 1 cut(s) 137
BtgZI GCGATG 1 cut(s) 90
BtrI CACGTC 1 cut(s) 456
BtsCI GGATG 1 cut(s) 940
BtsI GCAGTG 1 cut(s) 116
BtsIMutI CAGTG 4 cut(s) 77, 116, 438, 650
Cac8I GCNNGC 1 cut(s) 333
CfoI GCGC 2 cut(s) 337, 423
Cfr10I RCCGGY 1 cut(s) 331
Cfr13I GGNCC 2 cut(s) 149, 428
CseI GACGC 2 cut(s) 221, 559
Csp6I GTAC 5 cut(s) 60, 102, 181, 364, 575
CviAII CATG 5 cut(s) 22, 505, 813, 861, 978
CviQI GTAC 5 cut(s) 60, 102, 181, 364, 575
DdeI CTNAG 1 cut(s) 727
DinI GGCGCC 1 cut(s) 336
DpnI GATC 1 cut(s) 960
DpnII GATC 1 cut(s) 958
EciI GGCGGA 1 cut(s) 861
Eco130I CCWWGG 1 cut(s) 770
Eco24I GRGCYC 2 cut(s) 293, 794
Eco47I GGWCC 2 cut(s) 149, 428
Eco57I CTGAAG 4 cut(s) 101, 263, 456, 655
EcoRII CCWGG 2 cut(s) 874, 948
EcoT14I CCWWGG 1 cut(s) 770
EcoT38I GRGCYC 2 cut(s) 293, 794
EgeI GGCGCC 1 cut(s) 336
EheI GGCGCC 1 cut(s) 336
ErhI CCWWGG 1 cut(s) 770
FaeI CATG 5 cut(s) 25, 508, 816, 864, 981
FalI AAGNNNNNCTT 2 cut(s) 209, 241
FatI CATG 5 cut(s) 21, 504, 812, 860, 977
FblI GTMKAC 2 cut(s) 235, 857
Fnu4HI GCNGC 3 cut(s) 310, 419, 831
FokI GGATG 1 cut(s) 947
FriOI GRGCYC 2 cut(s) 293, 794
Fsp4HI GCNGC 3 cut(s) 310, 419, 831
FspI TGCGCA 1 cut(s) 422
GlaI GCGC 2 cut(s) 336, 422
GluI GCNGC 3 cut(s) 310, 419, 831
GsaI CCCAGC 1 cut(s) 450
GsuI CTGGAG 1 cut(s) 263
HaeII RGCGCY 1 cut(s) 338
HapII CCGG 2 cut(s) 332, 532
HgaI GACGC 2 cut(s) 221, 559
HhaI GCGC 2 cut(s) 337, 423
Hin1I GRCGYC 3 cut(s) 232, 335, 693
Hin1II CATG 5 cut(s) 25, 508, 816, 864, 981
Hin6I GCGC 2 cut(s) 335, 421
HinP1I GCGC 2 cut(s) 335, 421
HinfI GANTC 3 cut(s) 173, 479, 800
HpaII CCGG 2 cut(s) 332, 532
HphI GGTGA 2 cut(s) 66, 965
Hpy166II GTNNAC 3 cut(s) 236, 453, 858
Hpy188I TCNGA 7 cut(s) 288, 345, 475, 484, 667, 674, 778
Hpy188III TCNNGA 5 cut(s) 226, 494, 631, 914, 1004
Hpy8I GTNNAC 3 cut(s) 236, 453, 858
Hpy99I CGWCG 4 cut(s) 575, 610, 698, 1017
HpyAV CCTTC 2 cut(s) 878, 908
HpyCH4III ACNGT 6 cut(s) 101, 383, 442, 527, 645, 1013
HpyCH4IV ACGT 2 cut(s) 455, 693
HpyCH4V TGCA 6 cut(s) 4, 195, 312, 392, 453, 930
HpyF10VI GCNNNNNNNGC 2 cut(s) 328, 467
HpyF3I CTNAG 1 cut(s) 727
HpySE526I ACGT 2 cut(s) 455, 693
Hsp92I GRCGYC 3 cut(s) 232, 335, 693
Hsp92II CATG 5 cut(s) 25, 508, 816, 864, 981
HspAI GCGC 2 cut(s) 335, 421
KasI GGCGCC 1 cut(s) 334
KroI GCCGGC 1 cut(s) 331
KroNI GCCGGC 1 cut(s) 333
Kzo9I GATC 1 cut(s) 958
LmnI GCTCC 2 cut(s) 717, 789
Lsp1109I GCAGC 3 cut(s) 296, 405, 817
LweI GCATC 4 cut(s) 74, 497, 817, 925
MaeII ACGT 2 cut(s) 455, 693
MaeIII GTNAC 1 cut(s) 401
MalI GATC 1 cut(s) 960
MboI GATC 1 cut(s) 958
MboII GAAGA 4 cut(s) 94, 103, 106, 791
MhlI GDGCHC 3 cut(s) 293, 455, 794
MluCI AATT 2 cut(s) 755, 969
Mly113I GGCGCC 1 cut(s) 335
MlyI GAGTC 1 cut(s) 167
MmeI TCCRAC 3 cut(s) 352, 756, 928
MroNI GCCGGC 1 cut(s) 331
MroXI GAANNNNTTC 1 cut(s) 221
MseI TTAA 2 cut(s) 722, 746
MslI CAYNNNNRTG 2 cut(s) 109, 811
MspI CCGG 2 cut(s) 332, 532
MspR9I CCNGG 2 cut(s) 876, 950
Mva1269I GAATGC 2 cut(s) 197, 932
MvaI CCWGG 2 cut(s) 876, 950
MwoI GCNNNNNNNGC 2 cut(s) 328, 467
NaeI GCCGGC 1 cut(s) 333
NarI GGCGCC 1 cut(s) 335
NdeII GATC 1 cut(s) 958
NgoMIV GCCGGC 1 cut(s) 331
NlaIII CATG 5 cut(s) 25, 508, 816, 864, 981
NlaIV GGNNCC 3 cut(s) 285, 336, 791
NmuCI GTSAC 1 cut(s) 401
NsbI TGCGCA 1 cut(s) 422
NspI RCATGY 2 cut(s) 508, 864
PciI ACATGT 2 cut(s) 504, 860
PcsI WCGNNNNNNNCGW 1 cut(s) 1009
PctI GAATGC 2 cut(s) 197, 932
PdiI GCCGGC 1 cut(s) 333
PdmI GAANNNNTTC 1 cut(s) 221
PfeI GAWTC 2 cut(s) 479, 800
PkrI GCNGC 3 cut(s) 311, 420, 832
PleI GAGTC 1 cut(s) 167
PluTI GGCGCC 1 cut(s) 338
PpsI GAGTC 1 cut(s) 167
PscI ACATGT 2 cut(s) 504, 860
PshAI GACNNNNGTC 1 cut(s) 507
PshBI ATTAAT 1 cut(s) 746
Psp6I CCWGG 2 cut(s) 874, 948
PspFI CCCAGC 1 cut(s) 446
PspGI CCWGG 2 cut(s) 874, 948
PspN4I GGNNCC 3 cut(s) 285, 336, 791
PspPI GGNCC 2 cut(s) 149, 428
RsaI GTAC 5 cut(s) 61, 103, 182, 365, 576
RsaNI GTAC 5 cut(s) 60, 102, 181, 364, 575
RseI CAYNNNNRTG 2 cut(s) 109, 811
SaqAI TTAA 2 cut(s) 722, 746
SatI GCNGC 3 cut(s) 310, 419, 831
Sau3AI GATC 1 cut(s) 958
Sau96I GGNCC 2 cut(s) 149, 428
SchI GAGTC 1 cut(s) 167
ScrFI CCNGG 2 cut(s) 876, 950
SduI GDGCHC 3 cut(s) 293, 455, 794
SfaNI GCATC 4 cut(s) 74, 497, 817, 925
SfoI GGCGCC 1 cut(s) 336
SinI GGWCC 2 cut(s) 149, 428
SmiMI CAYNNNNRTG 2 cut(s) 109, 811
SmlI CTYRAG 1 cut(s) 226
SmoI CTYRAG 1 cut(s) 226
Sse9I AATT 2 cut(s) 755, 969
SsiI CCGC 2 cut(s) 114, 872
SspDI GGCGCC 1 cut(s) 334
SspI AATATT 1 cut(s) 256
StyD4I CCNGG 2 cut(s) 874, 948
StyI CCWWGG 1 cut(s) 770
TaaI ACNGT 6 cut(s) 101, 383, 442, 527, 645, 1013
TaiI ACGT 2 cut(s) 458, 696
TaqI TCGA 3 cut(s) 495, 913, 1003
TasI AATT 2 cut(s) 755, 969
TatI WGTACW 3 cut(s) 59, 101, 363
TfiI GAWTC 2 cut(s) 479, 800
Tru1I TTAA 2 cut(s) 722, 746
Tru9I TTAA 2 cut(s) 722, 746
TscAI CASTG 4 cut(s) 84, 116, 445, 650
TseFI GTSAC 1 cut(s) 401
TseI GCWGC 3 cut(s) 309, 418, 830
Tsp45I GTSAC 1 cut(s) 401
TspDTI ATGAA 4 cut(s) 19, 603, 825, 939
TspGWI ACGGA 3 cut(s) 126, 623, 933
TspRI CASTG 4 cut(s) 84, 116, 445, 650
VneI GTGCAC 1 cut(s) 451
VpaK11BI GGWCC 2 cut(s) 149, 428
VspI ATTAAT 1 cut(s) 746
XapI RAATTY 1 cut(s) 755
XceI RCATGY 2 cut(s) 508, 864
XmiI GTMKAC 2 cut(s) 235, 857
XmnI GAANNNNTTC 1 cut(s) 221
ZraI GACGTC 1 cut(s) 694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.