Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001617.1

Orthogroup ID

OG0000052

Physical Location & Seq

Genomic Coordinates Reverse (-)

2263 .. 6681

Gene Structure 4419 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001617.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1824 bp

atggcaaacagcaagtacgagtatgtcaagtcatacgaagttgaagatgagatcttcttgcctaatttgattgttgttcgaattgatggccgtgattttcgaaggtttgcagaaatgcatgagtttgagaaaccaaatgatgaggtagcattgaatttgatgaattcatgcgcagtttctgtgtcggaggagtttccagacattgttttttcatatggatttagtgacgagtacagctttgtcttcaagaagacgtccgagtttcaccagagtttcaccgtgttgcaaatttcagctctcatgctctctgatgcatccaagattggcaccagtaaagaagagaaaaacaaccttctttttgaaaagtttgagatcaattaccaaaagttaaatgaaatgttttgtcaaggttcctgcattttgaaaactgaggtgattgacgtagtacagcacaatgagaatggttctcctgtccggagacttaggaaaaagttaagaatagtccattcaaagaatatagcggggataagcttttggaacaagcacaaatgtcttcggaatgagcttggtagcttctgtaaggacattggaaaagttgaaccagattttctcaagtccttccagtttgaaaaaagattgatgccatcgacttggattgtcattagaattgatggttgccatttccacaggttttctgatgttcatgaatttgtgaagccaaatgatgagcaggctctcaagcttatgaattcatgtgcagtggctgtggtaaaagagtttcaagacacagtgtttgcctatggcgtcagtgatgaatacagctttgtattgaagaaagactctcagttctatcaaaggcgagcaaggccttggactactaatcttcctcatagtggtcgcacgcaacaatcatccaccggcgaagtccatgttgagaaaattaagctgttcacttccaaggagttgctcaaagccacaaacgagtttaatgtaaacagagttcttggccatggaagtcaaggtaccgtttacaaaggaatgttggaagatggaaaaattgttgctgtaaagaagtccaaaatagttgatggaggcgaagttggacagttcattaatgaaattgtcattctttcacaaatcaaccacaggaatgtcgtcaagctattaggttgttgcttagagacagaagttcctcttttggtttacgaattcatactcaatggaagcctttctcaatacattcatcatcaaaatgattttcgtctcacatgggaaatgcgcttacgagtttctatgcaagttgctggagctctttcctacttgcattcatctacttgcctgccaatttaccatcgagacatcaagtcaggtaacatactcctggatgataagtttaatgccaaaatagctgattttgggacttcaagatccattagcattgacaaaacgcatcttacaacactagtaaaaggaacatttggttatctagatccaggatattttcaatccagccaatttacggacaagagtgacgtttatagctttggagtggtccttgttgagctcttaactggacaaaaaccagttttcttgacaccatctggagaatggagtagcctagcaactcatttcattgagtccatggaagaaaatagtctgtttgatattattgatgcgcgagttatgaaggatggtgggaaggaagagatcatagcagttgctaaccttgccaaaagatgcttggatttgaatggaaagaaacgtccaactatgaaagaagtagcagcaacgctagaggaaattctactgttagttactagttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000166 GO:0000278 GO:0000287 GO:0000966 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008033 GO:0008144 GO:0008150 GO:0008152 GO:0008192 GO:0008193 GO:0008283 GO:0009451 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0017076 GO:0019001 GO:0022402 GO:0022607 GO:0030554 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032559 GO:0032561 GO:0033554 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0035639 GO:0036094 GO:0042802 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0046483 GO:0046872 GO:0050896 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0051716 GO:0065003 GO:0070013 GO:0070568 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097367 GO:0099116 GO:1901265 GO:1901360 GO:1901363 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thg1 Thg1C

Protein Analysis

607

Amino Acids

69.19

Weight (kDa)

6.55

Isoelectric Point (pI)

32.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16090 AT1G16110 AT1G16120 AT1G16130 AT1G16150 AT1G16160 AT1G16260 AT1G16260 AT1G16260 AT1G79670 AT1G79670
fragaria_vesca	FvH4_1g22960 FvH4_3g09860 FvH4_3g10284 FvH4_3g10284 FvH4_3g10540 FvH4_3g24040 FvH4_3g35290 FvH4_3g35290 FvH4_5g06860 FvH4_5g06940 FvH4_6g15920 FvH4_6g15920 FvH4_6g37660 FvH4_6g37670 FvH4_6g37691 FvH4_6g37700 FvH4_6g37710 FvH4_6g38990 FvH4_6g39000 FvH4_6g39020 FvH4_6g39020 FvH4_6g39020 FvH4_6g39021 FvH4_6g39030 FvH4_6g39030 FvH4_6g39031 FvH4_6g39032 FvH4_6g45200 FvH4_6g45200
malus_domestica	MD08G1107900.v1.1 MD09G1145100.v1.1 MD09G1145200.v1.1 MD09G1145300.v1.1 MD09G1145400.v1.1 MD09G1145500.v1.1 MD17G1131600.v1.1 MD17G1131700.v1.1 MD17G1131900.v1.1 MD17G1132000.v1.1
prunus_persica	Prupe.1G188400_v2.0.a1 Prupe.1G188700_v2.0.a1 Prupe.3G180500_v2.0.a1 Prupe.3G180600_v2.0.a1 Prupe.3G180700_v2.0.a1 Prupe.3G181000_v2.0.a1 Prupe.3G181100_v2.0.a1 Prupe.3G181100_v2.0.a1 Prupe.3G181200_v2.0.a1 Prupe.3G181200_v2.0.a1 Prupe.3G181400_v2.0.a1 Prupe.3G181500_v2.0.a1 Prupe.3G181600_v2.0.a1 Prupe.3G181800_v2.0.a1 Prupe.3G181900_v2.0.a1 Prupe.3G182000_v2.0.a1 Prupe.3G182100_v2.0.a1 Prupe.3G182200_v2.0.a1 Prupe.3G182300_v2.0.a1 Prupe.3G182400_v2.0.a1 Prupe.3G182500_v2.0.a1 Prupe.3G182600_v2.0.a1 Prupe.3G182700_v2.0.a1 Prupe.5G051200_v2.0.a1 Prupe.5G051300_v2.0.a1 Prupe.5G051400_v2.0.a1 Prupe.5G051500_v2.0.a1 Prupe.5G051600_v2.0.a1 Prupe.5G051600_v2.0.a1 Prupe.5G051800_v2.0.a1
pyrus_communis	pycom09g06470 pycom09g06490 pycom09g06510 pycom09g06520 pycom09g06570 pycom09g06580 pycom17g12440 pycom17g12450 pycom17g12530
rosa_chinensis	RchiOBHm_Chr2g0117481 RchiOBHm_Chr2g0128321 RchiOBHm_Chr2g0128331 RchiOBHm_Chr2g0128581 RchiOBHm_Chr2g0128591 RchiOBHm_Chr2g0150651 RchiOBHm_Chr2g0150661 RchiOBHm_Chr2g0150741 RchiOBHm_Chr2g0150781 RchiOBHm_Chr2g0152581 RchiOBHm_Chr2g0152591 RchiOBHm_Chr2g0152641 RchiOBHm_Chr2g0152661 RchiOBHm_Chr2g0152711 RchiOBHm_Chr2g0152731 RchiOBHm_Chr2g0152871 RchiOBHm_Chr2g0152881 RchiOBHm_Chr2g0152901 RchiOBHm_Chr2g0152921 RchiOBHm_Chr2g0152931 RchiOBHm_Chr2g0152941 RchiOBHm_Chr3g0469621 RchiOBHm_Chr3g0469631 RchiOBHm_Chr5g0015591 RchiOBHm_Chr5g0046061 RchiOBHm_Chr5g0047341 RchiOBHm_Chr5g0063341 RchiOBHm_Chr5g0063351 RchiOBHm_Chr6g0264381 RchiOBHm_Chr7g0191741 RchiOBHm_Chr7g0210751 RchiOBHm_Chr7g0221871 RchiOBHm_Chr7g0225671 RchiOBHm_Chr7g0225891 RchiOBHm_Chr7g0225901 RchiOBHm_Chr7g0225961 RchiOBHm_Chr7g0225971 RchiOBHm_Chr7g0234031 RchiOBHm_Chr7g0234041
rosa_laevigata	RLG00000001780 RLG00000001784 RLG00000001785 RLG00000001788 RLG00000001789 RLG00000001793 RLG00000001794 RLG00000002941 RLG00000004430 RLG00000014259 RLG00000018349 RLG00000019001 RLG00000019005 RLG00000019011 RLG00000020503 RLG00000020507 RLG00000020648 RLG00000020649 RLG00000020651 RLG00000020652 RLG00000020653 RLG00000020655 RLG00000020656 RLG00000020657 RLG00000023668 RLG00000024331 RLG00000034386 RLG00000035624 RLG00000035625
rosa_multiflora	Rmu_co8401977.1_g000001 Rmu_co8409989.1_g000001 Rmu_co8432067.1_g000001 Rmu_co8491011.1_g000001 Rmu_sc0000580.1_g000085 Rmu_sc0000740.1_g000012 Rmu_sc0000740.1_g000014 Rmu_sc0000837.1_g000041 Rmu_sc0000837.1_g000077 Rmu_sc0001552.1_g000008 Rmu_sc0001617.1_g000001 Rmu_sc0002082.1_g000006 Rmu_sc0002082.1_g000007 Rmu_sc0002082.1_g000022 Rmu_sc0002989.1_g000013 Rmu_sc0003064.1_g000011 Rmu_sc0003127.1_g000003 Rmu_sc0003127.1_g000014 Rmu_sc0003127.1_g000028 Rmu_sc0003127.1_g000032 Rmu_sc0003127.1_g000034 Rmu_sc0003127.1_g000035 Rmu_sc0003127.1_g000054 Rmu_sc0003127.1_g000055 Rmu_sc0003465.1_g000034 Rmu_sc0005223.1_g000021 Rmu_sc0005302.1_g000004 Rmu_sc0005378.1_g000005 Rmu_sc0005378.1_g000007 Rmu_sc0005378.1_g000017 Rmu_sc0005378.1_g000034 Rmu_sc0005378.1_g000039 Rmu_sc0005378.1_g000042 Rmu_sc0005378.1_g000056 Rmu_sc0005378.1_g000057 Rmu_sc0005378.1_g000058 Rmu_sc0006483.1_g000013 Rmu_sc0008775.1_g000006 Rmu_sc0008775.1_g000011 Rmu_sc0009104.1_g000010 Rmu_sc0009104.1_g000011 Rmu_sc0009104.1_g000020 Rmu_sc0010960.1_g000006 Rmu_sc0011737.1_g000002 Rmu_sc0011737.1_g000004 Rmu_sc0012875.1_g000003 Rmu_sc0013122.1_g000002 Rmu_sc0018944.1_g000002 Rmu_sc0020155.1_g000001 Rmu_sc0020156.1_g000001 Rmu_ssc0000233.1_g000012 Rmu_ssc0000233.1_g000013 Rmu_ssc0000233.1_g000030 Rmu_ssc0000233.1_g000044 Rmu_ssc0000233.1_g000047 Rmu_ssc0000233.1_g000052 Rmu_ssc0000233.1_g000054 Rmu_ssc0000233.1_g000055 Rmu_ssc0000233.1_g000080 Rmu_ssc0000233.1_g000082 Rmu_ssc0000233.1_g000087 Rmu_ssc0000233.1_g000094 Rmu_ssc0000480.1_g000060 Rmu_ssc0000480.1_g000061
rosa_roxburghii	Rroxscaffold_1G00017360 Rroxscaffold_1G00017370 Rroxscaffold_1G00060880 Rroxscaffold_2G00095370 Rroxscaffold_2G00095420 Rroxscaffold_2G00095450 Rroxscaffold_2G00095460 Rroxscaffold_2G00095490 Rroxscaffold_2G00095560 Rroxscaffold_2G00095570 Rroxscaffold_2G00096960 Rroxscaffold_2G00097010 Rroxscaffold_2G00126500 Rroxscaffold_3G00233390 Rroxscaffold_3G00233580 Rroxscaffold_3G00263590 Rroxscaffold_6G00411660
rosa_rugosa	Rorug01G0142700.1 Rorug01G0148600.1 Rorug02G0212800 Rorug02G0422400 Rorug02G0434700 Rorug02G0434800 Rorug02G0435000 Rorug02G0435200 Rorug02G0435300 Rorug02G0435400 Rorug02G0435700 Rorug02G0435800 Rorug02G0436200 Rorug02G0436300 Rorug03G0102800 Rorug04G0123600 Rorug04G0123700 Rorug04G0123800 Rorug04G0124000 Rorug04G0124000 Rorug04G0124500 Rorug04G0124700 Rorug04G0124900 Rorug05G0028600.1 Rorug05G0356100 Rorug05G0356800 Rorug06G0011900 Rorug07G0092900 Rorug07G0122800 Rorug07G0232500 Rorug07G0232600 Rorug07G0232700
rosa_samantha	Rh1AG408900 Rh2AG332700 Rh2AG333400 Rh2AG482100 Rh2AG482200 Rh2AG482500 Rh2AG496000 Rh2AG496100 Rh2AG496200 Rh2AG496300 Rh2AG497100 Rh2AG497200 Rh2AG497400 Rh2BG280300 Rh2BG340500 Rh2BG494400 Rh2BG494900 Rh2BG507800 Rh2BG507900 Rh2BG508000 Rh2BG508100 Rh2BG508300 Rh2BG508500 Rh2BG508700 Rh2BG509200 Rh2BG512700 Rh2CG271900 Rh2CG319100 Rh2CG319400 Rh2CG357200 Rh2CG468400 Rh2CG468500 Rh2CG468800 Rh2CG482200 Rh2CG482300 Rh2CG482400 Rh2CG482500 Rh2CG483200 Rh2CG483300 Rh2CG483500 Rh2CG483600 Rh2DG294600 Rh2DG357100 Rh2DG357700 Rh2DG503400 Rh2DG504300 Rh2DG504900 Rh2DG505500 Rh2DG505900 Rh2DG519000 Rh2DG519100 Rh2DG519300 Rh2DG519400 Rh2DG520000 Rh2DG520200 Rh2DG520500 Rh2DG521000 Rh2DG524300 Rh3AG152400 Rh3AG334400 Rh3BG176100 Rh3CG167200 Rh3DG199400 Rh3DG199500 Rh5AG415900 Rh5BG430800 Rh5CG454300 Rh5DG444600 Rh6AG247500 Rh6AG247700 Rh7AG120600 Rh7AG369800 Rh7AG370800 Rh7AG468300 Rh7BG366400 Rh7CG125200 Rh7CG388700 Rh7CG389400 Rh7CG459600 Rh7DG123300 Rh7DG123400 Rh7DG123800 Rh7DG123900 Rh7DG377200
rosa_wichuraiana	Rw0G004850 Rw0G004870 Rw0G013120 Rw1G013520 Rw2G026850 Rw2G026910 Rw2G027120 Rw2G039340 Rw2G039360 Rw2G039410 Rw2G039420 Rw2G039440 Rw2G039520 Rw2G040810 Rw2G040830 Rw2G040850 Rw2G040860 Rw2G040880 Rw2G041210 Rw2G041220 Rw2G041240 Rw2G041250 Rw3G014370 Rw5G010520 Rw5G039070 Rw6G021410 Rw6G021420 Rw7G010280 Rw7G021780 Rw7G031820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	257
Acc16I	TGCGCA	1 cut(s)	172
Acc65I	GGTACC	1 cut(s)	1022
AccB1I	GGYRCC	2 cut(s)	326, 1022
AccII	CGCG	1 cut(s)	1678
AccIII	TCCGGA	1 cut(s)	474
AciI	CCGC	1 cut(s)	521
AclWI	GGATC	2 cut(s)	1422, 1484
AcoI	YGGCCR	2 cut(s)	88, 1006
AcsI	RAATTY	7 cut(s)	154, 163, 288, 707, 748, 1208, 1800
AcyI	GRCGYC	2 cut(s)	254, 804
AfaI	GTAC	4 cut(s)	17, 233, 447, 1024
AfiI	CCNNNNNNNGG	2 cut(s)	893, 1519
AhdI	GACNNNNNGTC	1 cut(s)	1363
AhlI	ACTAGT	2 cut(s)	1462, 1817
AjnI	CCWGG	2 cut(s)	1380, 1492
Alw21I	GWGCWC	2 cut(s)	1312, 1566
Alw26I	GTCTC	4 cut(s)	472, 1175, 1268, 1350
AlwI	GGATC	2 cut(s)	1422, 1484
AlwNI	CAGNNNCTG	2 cut(s)	179, 764
Aor13HI	TCCGGA	1 cut(s)	474
AoxI	GGCC	3 cut(s)	88, 866, 1006
ApeKI	GCWGC	1 cut(s)	1784
ApoI	RAATTY	7 cut(s)	154, 163, 288, 707, 748, 1208, 1800
ArsI	GACNNNNNNTTYG	2 cut(s)	776, 808
AseI	ATTAAT	1 cut(s)	1113
Asp700I	GAANNNNTTC	1 cut(s)	1228
Asp718I	GGTACC	1 cut(s)	1022
AspLEI	GCGC	3 cut(s)	173, 1281, 1678
AspS9I	GGNCC	1 cut(s)	1552
AsuHPI	GGTGA	3 cut(s)	257, 268, 445
AsuII	TTCGAA	2 cut(s)	79, 100
AvaII	GGWCC	1 cut(s)	1552
BalI	TGGCCA	1 cut(s)	1008
BanI	GGYRCC	2 cut(s)	326, 1022
BanII	GRGCYC	2 cut(s)	1312, 1566
BarI	GAAGNNNNNNTAC	2 cut(s)	1006, 1038
BbsI	GAAGAC	3 cut(s)	235, 257, 545
Bbv12I	GWGCWC	2 cut(s)	1312, 1566
BbvI	GCAGC	1 cut(s)	1796
BccI	CCATC	8 cut(s)	80, 652, 665, 1043, 1082, 1359, 1606, 1685
BceAI	ACGGC	1 cut(s)	75
BciT130I	CCWGG	2 cut(s)	1382, 1494
BcoDI	GTCTC	4 cut(s)	472, 1175, 1268, 1350
BcuI	ACTAGT	2 cut(s)	1462, 1817
BfaI	CTAG	5 cut(s)	1463, 1487, 1619, 1793, 1818
BglII	AGATCT	1 cut(s)	51
BisI	GCNGC	1 cut(s)	1785
BlsI	GCNGC	1 cut(s)	1786
Bme1390I	CCNGG	2 cut(s)	1382, 1494
Bme18I	GGWCC	1 cut(s)	1552
BmeRI	GACNNNNNGTC	1 cut(s)	1363
BmgT120I	GGNCC	1 cut(s)	1552
BmiI	GGNNCC	3 cut(s)	328, 412, 1024
BmrFI	CCNGG	2 cut(s)	1382, 1494
BmsI	GCATC	6 cut(s)	301, 323, 630, 1459, 1663, 1727
BpiI	GAAGAC	3 cut(s)	235, 257, 545
BpmI	CTGGAG	2 cut(s)	1326, 1623
Bpu14I	TTCGAA	2 cut(s)	79, 100
BpuEI	CTTGAG	2 cut(s)	596, 722
BsaHI	GRCGYC	2 cut(s)	254, 804
BsaJI	CCNNGG	4 cut(s)	869, 957, 1009, 1641
BsaWI	WCCGGW	1 cut(s)	474
BsaXI	ACNNNNNCTCC	2 cut(s)	1083, 1113
Bsc4I	CCNNNNNNNGG	2 cut(s)	893, 1519
Bse118I	RCCGGY	1 cut(s)	917
Bse1I	ACTGG	4 cut(s)	330, 622, 1576, 1583
BseAI	TCCGGA	1 cut(s)	474
BseBI	CCWGG	2 cut(s)	1382, 1494
BseDI	CCNNGG	4 cut(s)	869, 957, 1009, 1641
BseGI	GGATG	4 cut(s)	314, 911, 1390, 1696
BseLI	CCNNNNNNNGG	2 cut(s)	893, 1519
BseMII	CTCAG	2 cut(s)	420, 857
BseNI	ACTGG	4 cut(s)	330, 622, 1576, 1583
BseRI	GAGGAG	1 cut(s)	203
BseXI	GCAGC	1 cut(s)	1796
BsgI	GTGCAG	1 cut(s)	777
Bsh1236I	CGCG	1 cut(s)	1678
BshFI	GGCC	3 cut(s)	90, 868, 1008
BshNI	GGYRCC	2 cut(s)	326, 1022
BsiHKAI	GWGCWC	2 cut(s)	1312, 1566
BsiSI	CCGG	2 cut(s)	475, 918
BslFI	GGGAC	1 cut(s)	1432
BslI	CCNNNNNNNGG	2 cut(s)	893, 1519
BsmAI	GTCTC	4 cut(s)	472, 1175, 1268, 1350
BsmBI	CGTCTC	1 cut(s)	1268
BsmFI	GGGAC	1 cut(s)	1432
BsmI	GAATGC	1 cut(s)	1324
BsnI	GGCC	3 cut(s)	90, 868, 1008
Bsp119I	TTCGAA	2 cut(s)	79, 100
Bsp1286I	GDGCHC	2 cut(s)	1312, 1566
Bsp13I	TCCGGA	1 cut(s)	474
Bsp143I	GATC	5 cut(s)	51, 372, 1427, 1489, 1707
Bsp19I	CCATGG	2 cut(s)	1009, 1641
BspACI	CCGC	1 cut(s)	521
BspANI	GGCC	3 cut(s)	90, 868, 1008
BspCNI	CTCAG	2 cut(s)	421, 856
BspEI	TCCGGA	1 cut(s)	474
BspFNI	CGCG	1 cut(s)	1678
BspHI	TCATGA	1 cut(s)	703
BspLI	GGNNCC	3 cut(s)	328, 412, 1024
BspPI	GGATC	2 cut(s)	1422, 1484
BspT104I	TTCGAA	2 cut(s)	79, 100
BspT107I	GGYRCC	2 cut(s)	326, 1022
BsrFI	RCCGGY	1 cut(s)	917
BsrI	ACTGG	4 cut(s)	330, 622, 1576, 1583
BssAI	RCCGGY	1 cut(s)	917
BssECI	CCNNGG	4 cut(s)	869, 957, 1009, 1641
BssMI	GATC	5 cut(s)	51, 372, 1427, 1489, 1707
BssNI	GRCGYC	2 cut(s)	254, 804
BssT1I	CCWWGG	4 cut(s)	869, 957, 1009, 1641
Bst2UI	CCWGG	2 cut(s)	1382, 1494
Bst4CI	ACNGT	5 cut(s)	280, 790, 1027, 1107, 1809
Bst6I	CTCTTC	2 cut(s)	333, 1698
BstACI	GRCGYC	2 cut(s)	254, 804
BstBI	TTCGAA	2 cut(s)	79, 100
BstC8I	GCNNGC	4 cut(s)	732, 861, 902, 1340
BstDEI	CTNAG	4 cut(s)	429, 482, 843, 1177
BstDSI	CCRYGG	2 cut(s)	1009, 1641
BstF5I	GGATG	4 cut(s)	314, 911, 1390, 1696
BstFNI	CGCG	1 cut(s)	1678
BstHHI	GCGC	3 cut(s)	173, 1281, 1678
BstKTI	GATC	5 cut(s)	54, 375, 1430, 1492, 1710
BstMAI	GTCTC	4 cut(s)	472, 1175, 1268, 1350
BstMBI	GATC	5 cut(s)	51, 372, 1427, 1489, 1707
BstMWI	GCNNNNNNNGC	3 cut(s)	865, 1406, 1727
BstNI	CCWGG	2 cut(s)	1382, 1494
BstSCI	CCNGG	2 cut(s)	1380, 1492
BstUI	CGCG	1 cut(s)	1678
BstV1I	GCAGC	1 cut(s)	1796
BstV2I	GAAGAC	3 cut(s)	235, 257, 545
BstX2I	RGATCY	3 cut(s)	51, 1427, 1489
BstXI	CCANNNNNNTGG	1 cut(s)	651
BstYI	RGATCY	3 cut(s)	51, 1427, 1489
BsuRI	GGCC	3 cut(s)	90, 868, 1008
BtgI	CCRYGG	2 cut(s)	1009, 1641
BtsCI	GGATG	4 cut(s)	314, 911, 1390, 1696
BtsI	GCAGTG	1 cut(s)	765
BtsIMutI	CAGTG	3 cut(s)	765, 795, 814
Cac8I	GCNNGC	4 cut(s)	732, 861, 902, 1340
CaiI	CAGNNNCTG	2 cut(s)	179, 764
CciI	TCATGA	1 cut(s)	703
CfoI	GCGC	3 cut(s)	173, 1281, 1678
Cfr10I	RCCGGY	1 cut(s)	917
Cfr13I	GGNCC	1 cut(s)	1552
CseI	GACGC	1 cut(s)	793
Csp6I	GTAC	4 cut(s)	16, 232, 446, 1023
CviAII	CATG	9 cut(s)	119, 168, 301, 704, 753, 929, 1010, 1269, 1642
CviQI	GTAC	4 cut(s)	16, 232, 446, 1023
DdeI	CTNAG	4 cut(s)	429, 482, 843, 1177
DpnI	GATC	5 cut(s)	53, 374, 1429, 1491, 1709
DpnII	GATC	5 cut(s)	51, 372, 1427, 1489, 1707
DriI	GACNNNNNGTC	1 cut(s)	1363
EaeI	YGGCCR	2 cut(s)	88, 1006
Eam1104I	CTCTTC	2 cut(s)	333, 1698
Eam1105I	GACNNNNNGTC	1 cut(s)	1363
EarI	CTCTTC	2 cut(s)	333, 1698
Ecl136II	GAGCTC	2 cut(s)	1310, 1564
Eco130I	CCWWGG	4 cut(s)	869, 957, 1009, 1641
Eco147I	AGGCCT	1 cut(s)	868
Eco24I	GRGCYC	2 cut(s)	1312, 1566
Eco47I	GGWCC	1 cut(s)	1552
Eco53kI	GAGCTC	2 cut(s)	1310, 1564
EcoICRI	GAGCTC	2 cut(s)	1310, 1564
EcoRI	GAATTC	3 cut(s)	163, 748, 1208
EcoRII	CCWGG	2 cut(s)	1380, 1492
EcoT14I	CCWWGG	4 cut(s)	869, 957, 1009, 1641
EcoT22I	ATGCAT	2 cut(s)	120, 316
EcoT38I	GRGCYC	2 cut(s)	1312, 1566
ErhI	CCWWGG	4 cut(s)	869, 957, 1009, 1641
Esp3I	CGTCTC	1 cut(s)	1268
FaeI	CATG	9 cut(s)	122, 171, 304, 707, 756, 932, 1013, 1272, 1645
FalI	AAGNNNNNCTT	2 cut(s)	1179, 1211
FaqI	GGGAC	1 cut(s)	1432
FatI	CATG	9 cut(s)	118, 167, 300, 703, 752, 928, 1009, 1268, 1641
FauI	CCCGC	1 cut(s)	514
FauNDI	CATATG	1 cut(s)	214
Fnu4HI	GCNGC	1 cut(s)	1785
FokI	GGATG	4 cut(s)	301, 898, 1397, 1703
FriOI	GRGCYC	2 cut(s)	1312, 1566
Fsp4HI	GCNGC	1 cut(s)	1785
FspBI	CTAG	5 cut(s)	1463, 1487, 1619, 1793, 1818
FspI	TGCGCA	1 cut(s)	172
GlaI	GCGC	3 cut(s)	172, 1280, 1677
GluI	GCNGC	1 cut(s)	1785
GsuI	CTGGAG	2 cut(s)	1326, 1623
HaeIII	GGCC	3 cut(s)	90, 868, 1008
HapII	CCGG	2 cut(s)	475, 918
HgaI	GACGC	1 cut(s)	793
HhaI	GCGC	3 cut(s)	173, 1281, 1678
Hin1I	GRCGYC	2 cut(s)	254, 804
Hin1II	CATG	9 cut(s)	122, 171, 304, 707, 756, 932, 1013, 1272, 1645
Hin6I	GCGC	3 cut(s)	171, 1279, 1676
HinP1I	GCGC	3 cut(s)	171, 1279, 1676
HindIII	AAGCTT	2 cut(s)	529, 740
HinfI	GANTC	2 cut(s)	839, 1637
HpaII	CCGG	2 cut(s)	475, 918
HphI	GGTGA	3 cut(s)	257, 268, 445
Hpy166II	GTNNAC	4 cut(s)	951, 994, 1030, 1204
Hpy188I	TCNGA	5 cut(s)	187, 259, 310, 558, 697
Hpy8I	GTNNAC	4 cut(s)	951, 994, 1030, 1204
HpyAV	CCTTC	5 cut(s)	96, 362, 628, 1681, 1693
HpyCH4III	ACNGT	5 cut(s)	280, 790, 1027, 1107, 1809
HpyCH4IV	ACGT	4 cut(s)	254, 441, 1533, 1762
HpyCH4V	TGCA	8 cut(s)	110, 118, 286, 314, 417, 758, 1297, 1324
HpyF10VI	GCNNNNNNNGC	3 cut(s)	865, 1406, 1727
HpyF3I	CTNAG	4 cut(s)	429, 482, 843, 1177
HpySE526I	ACGT	4 cut(s)	254, 441, 1533, 1762
Hsp92I	GRCGYC	2 cut(s)	254, 804
Hsp92II	CATG	9 cut(s)	122, 171, 304, 707, 756, 932, 1013, 1272, 1645
HspAI	GCGC	3 cut(s)	171, 1279, 1676
Kpn2I	TCCGGA	1 cut(s)	474
KpnI	GGTACC	1 cut(s)	1026
Kzo9I	GATC	5 cut(s)	51, 372, 1427, 1489, 1707
LmnI	GCTCC	1 cut(s)	1307
Lsp1109I	GCAGC	1 cut(s)	1796
LweI	GCATC	6 cut(s)	301, 323, 630, 1459, 1663, 1727
MaeI	CTAG	5 cut(s)	1463, 1487, 1619, 1793, 1818
MaeII	ACGT	4 cut(s)	254, 441, 1533, 1762
MaeIII	GTNAC	4 cut(s)	224, 1370, 1529, 1813
MalI	GATC	5 cut(s)	53, 374, 1429, 1491, 1709
MboI	GATC	5 cut(s)	51, 372, 1427, 1489, 1707
MflI	RGATCY	3 cut(s)	51, 1427, 1489
MhlI	GDGCHC	2 cut(s)	1312, 1566
MlsI	TGGCCA	1 cut(s)	1008
MluNI	TGGCCA	1 cut(s)	1008
MlyI	GAGTC	2 cut(s)	833, 1646
MmeI	TCCRAC	4 cut(s)	165, 1023, 1081, 1790
MnlI	CCTC	7 cut(s)	136, 181, 424, 897, 1085, 1203, 1789
Mox20I	TGGCCA	1 cut(s)	1008
Mph1103I	ATGCAT	2 cut(s)	120, 316
MroI	TCCGGA	1 cut(s)	474
MroXI	GAANNNNTTC	1 cut(s)	1228
MscI	TGGCCA	1 cut(s)	1008
MseI	TTAA	7 cut(s)	389, 494, 942, 987, 1113, 1395, 1568
MslI	CAYNNNNRTG	2 cut(s)	1149, 1251
Msp20I	TGGCCA	1 cut(s)	1008
MspI	CCGG	2 cut(s)	475, 918
MspR9I	CCNGG	2 cut(s)	1382, 1494
Mva1269I	GAATGC	1 cut(s)	1324
MvaI	CCWGG	2 cut(s)	1382, 1494
MvnI	CGCG	1 cut(s)	1678
MwoI	GCNNNNNNNGC	3 cut(s)	865, 1406, 1727
NcoI	CCATGG	2 cut(s)	1009, 1641
NdeI	CATATG	1 cut(s)	214
NdeII	GATC	5 cut(s)	51, 372, 1427, 1489, 1707
NlaIII	CATG	9 cut(s)	122, 171, 304, 707, 756, 932, 1013, 1272, 1645
NlaIV	GGNNCC	3 cut(s)	328, 412, 1024
NmuCI	GTSAC	2 cut(s)	224, 1529
NsbI	TGCGCA	1 cut(s)	172
NsiI	ATGCAT	2 cut(s)	120, 316
NspV	TTCGAA	2 cut(s)	79, 100
PagI	TCATGA	1 cut(s)	703
PceI	AGGCCT	1 cut(s)	868
PctI	GAATGC	1 cut(s)	1324
PdmI	GAANNNNTTC	1 cut(s)	1228
PfoI	TCCNGGA	2 cut(s)	1380, 1492
PkrI	GCNGC	1 cut(s)	1786
PleI	GAGTC	2 cut(s)	833, 1645
PpsI	GAGTC	2 cut(s)	833, 1645
PshBI	ATTAAT	1 cut(s)	1113
Psp124BI	GAGCTC	2 cut(s)	1312, 1566
Psp6I	CCWGG	2 cut(s)	1380, 1492
PspGI	CCWGG	2 cut(s)	1380, 1492
PspN4I	GGNNCC	3 cut(s)	328, 412, 1024
PspPI	GGNCC	1 cut(s)	1552
PsrI	GAACNNNNNNTAC	2 cut(s)	984, 1016
PstNI	CAGNNNCTG	2 cut(s)	179, 764
PsuI	RGATCY	3 cut(s)	51, 1427, 1489
RsaI	GTAC	4 cut(s)	17, 233, 447, 1024
RsaNI	GTAC	4 cut(s)	16, 232, 446, 1023
RseI	CAYNNNNRTG	2 cut(s)	1149, 1251
SacI	GAGCTC	2 cut(s)	1312, 1566
SaqAI	TTAA	7 cut(s)	389, 494, 942, 987, 1113, 1395, 1568
SatI	GCNGC	1 cut(s)	1785
Sau3AI	GATC	5 cut(s)	51, 372, 1427, 1489, 1707
Sau96I	GGNCC	1 cut(s)	1552
SchI	GAGTC	2 cut(s)	833, 1646
ScrFI	CCNGG	2 cut(s)	1382, 1494
SduI	GDGCHC	2 cut(s)	1312, 1566
SfaNI	GCATC	6 cut(s)	301, 323, 630, 1459, 1663, 1727
SfuI	TTCGAA	2 cut(s)	79, 100
SgrAI	CRCCGGYG	1 cut(s)	917
SinI	GGWCC	1 cut(s)	1552
SmiMI	CAYNNNNRTG	2 cut(s)	1149, 1251
SmlI	CTYRAG	2 cut(s)	611, 737
SmoI	CTYRAG	2 cut(s)	611, 737
SpeI	ACTAGT	2 cut(s)	1462, 1817
SseBI	AGGCCT	1 cut(s)	868
SsiI	CCGC	1 cut(s)	521
SspMI	CTAG	5 cut(s)	1463, 1487, 1619, 1793, 1818
SstI	GAGCTC	2 cut(s)	1312, 1566
StuI	AGGCCT	1 cut(s)	868
StyD4I	CCNGG	2 cut(s)	1380, 1492
StyI	CCWWGG	4 cut(s)	869, 957, 1009, 1641
TaaI	ACNGT	5 cut(s)	280, 790, 1027, 1107, 1809
TaiI	ACGT	4 cut(s)	257, 444, 1536, 1765
TaqI	TCGA	4 cut(s)	79, 100, 647, 1354
TatI	WGTACW	2 cut(s)	231, 445
Tru1I	TTAA	7 cut(s)	389, 494, 942, 987, 1113, 1395, 1568
Tru9I	TTAA	7 cut(s)	389, 494, 942, 987, 1113, 1395, 1568
TscAI	CASTG	3 cut(s)	765, 795, 814
TseFI	GTSAC	2 cut(s)	224, 1529
TseI	GCWGC	1 cut(s)	1784
Tsp45I	GTSAC	2 cut(s)	224, 1529
TspGWI	ACGGA	1 cut(s)	1535
TspRI	CASTG	3 cut(s)	765, 795, 814
VpaK11BI	GGWCC	1 cut(s)	1552
VspI	ATTAAT	1 cut(s)	1113
XapI	RAATTY	7 cut(s)	154, 163, 288, 707, 748, 1208, 1800
XbaI	TCTAGA	1 cut(s)	1486
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1605, 1738
XmnI	GAANNNNTTC	1 cut(s)	1228
XspI	CTAG	5 cut(s)	1463, 1487, 1619, 1793, 1818
ZraI	GACGTC	1 cut(s)	255
Zsp2I	ATGCAT	2 cut(s)	120, 316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.