Rmu_sc0000580.1_g000085

Wall-associated receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000580.1
OG0000052
Physical Location & Seq
Forward (+)
354532 .. 357465
2934 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000580.1_g000085.1.cds

Sequence Viewer

Length: 2325 bp
atggccttgcaagtctcattggtggcagtcctactcctgttattggcattatcggcggctagtacaactacgacaacaacagcgcctactcaggccctgcctggctgctctaacaagtgcggcaatctcacaattccatatccatttggcatgaagaaggattgttacttgcgaaaagaattctttatcaattgcaatcatacgacccaaccaccagtagcatatttgggtagagggaatctcatggttactgacatttccgttgatcacggtgagctgcggatattgggctacgtagctaaaaaatgctatcacccctttcagagcggccgctatgacaagtccatagatggagaattacatttcatttggctgggtcttccttatacgatctcccagtccaaaaacaagttctatgccgttggttgtgacgcttctgcagttgtaaaaggcttccgaggggaagaagagttgattaccgggtgcatgtccatatgcaacagctttgtcagcgttgataatcactcttgctccggcgttgggtgttgcgagactaacatccccagcggactaaagaatatgacgctggagttccatagctaccaaaatactttgaaaataagaggttttaacccctgcagctacgccttcattgtggaacaaggccagttcagtttctcccctgcgagttttaaagagctgaacaacattgaaaaacttccaatggttcttaattgggcaattgggaatgacacagacccctgtgatgaagctcgaaagaggaaggatttcgcatgcagggctaatagcttatgcatcaaccgggatatggctatcaatgagtctgtaggttacttatgcaagtgctcgcctggttatgaaggaaacccttaccacccagatggttgccaagatattgatgaatgcaaggcttcaattaacccctgcaatcacggaacgtgcatcaatttagtgggaacttactcctgtttgtgtcccaaagggtacaaaaactacagaacaaatgcaaaacgttgcctcaaattggagatcaatcaacctgcagctaggagactctttctgatcacattaggtactggcggcagtcttggactaatatttctagccattgctgcatggtggttggtccaagtcataaagaaaaggaaaaacaaaatacgaaaggagaagttttttaaacaaaatggtggtttagtattggagcaacaattatcttctggtgatcaagcaaatgttgaaaaaatcaagttgttcaattcaagggagctggagaaagccacggaccactttagcatagatagaattcttggccagggaggccaaggtactgtttacaaaggaatgttgatggatggacaaattgttgctatcaagaagtctaaaatagttaatggaggcgatcgtgaagtgcgacaattcattaatgaaattgtgattctttcacaaattaaccacagaaatgtggttaaactattgggttgttgtttggaaaccgaaattcccctcttggtctatgaatttctacctaatggaacactttctcagtacattcatgaccaagatgaggagtttcctcttacatggagaacgcgattgcgagtgtctaccgaagttgctggagctctttcatatttgcactcagcagcttctattcctatttaccaccgggacatcaagtccacaaacatactcttggatgccaagtacagagcaaaaattgcagattttgggacttcaagatccatttccattgaccagacacatctcacaacagtagtacatggaacatttggttatttggacccagagtactttcaatcaagccaatttacagaaaagagtgatgtttacagcttcggtgtggtccttgctgagctcttgaccggacaaaaaccagtttccatgacgaggtcgaaagaaagtagaagcctagcaactcatttccttctttccatggagcagaatcgtttgtttgatattcttgaccctcaagttatgaaagatggtatcaaagaagaaattatagcagttgcttaccttgcgcaaaaatgcttagatttgaatggaaggaaacgtcctactatgaaagaagtagccgcggcattggagggagttcgagtggcggtcaaagatgctgatcatgttcaacaaaatttggtaggggaaagagacgtcagaactcatgaaataatcacccaagcttattgcaatgttgttcctacatcacccggtccttttacagatggtggtactgcaggttcttcatctgatgtacaaccactattgtttcacaatatacggtag

Protein Analysis

774

Amino Acids

85.94

Weight (kDa)

8.37

Isoelectric Point (pI)

32.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000052)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16090 AT1G16110 AT1G16120 AT1G16130 AT1G16150 AT1G16160 AT1G16260 AT1G16260 AT1G16260 AT1G79670 AT1G79670
fragaria_vesca FvH4_1g22960 FvH4_3g09860 FvH4_3g10284 FvH4_3g10284 FvH4_3g10540 FvH4_3g24040 FvH4_3g35290 FvH4_3g35290 FvH4_5g06860 FvH4_5g06940 FvH4_6g15920 FvH4_6g15920 FvH4_6g37660 FvH4_6g37670 FvH4_6g37691 FvH4_6g37700 FvH4_6g37710 FvH4_6g38990 FvH4_6g39000 FvH4_6g39020 FvH4_6g39020 FvH4_6g39020 FvH4_6g39021 FvH4_6g39030 FvH4_6g39030 FvH4_6g39031 FvH4_6g39032 FvH4_6g45200 FvH4_6g45200
malus_domestica MD08G1107900.v1.1 MD09G1145100.v1.1 MD09G1145200.v1.1 MD09G1145300.v1.1 MD09G1145400.v1.1 MD09G1145500.v1.1 MD17G1131600.v1.1 MD17G1131700.v1.1 MD17G1131900.v1.1 MD17G1132000.v1.1
prunus_persica Prupe.1G188400_v2.0.a1 Prupe.1G188700_v2.0.a1 Prupe.3G180500_v2.0.a1 Prupe.3G180600_v2.0.a1 Prupe.3G180700_v2.0.a1 Prupe.3G181000_v2.0.a1 Prupe.3G181100_v2.0.a1 Prupe.3G181100_v2.0.a1 Prupe.3G181200_v2.0.a1 Prupe.3G181200_v2.0.a1 Prupe.3G181400_v2.0.a1 Prupe.3G181500_v2.0.a1 Prupe.3G181600_v2.0.a1 Prupe.3G181800_v2.0.a1 Prupe.3G181900_v2.0.a1 Prupe.3G182000_v2.0.a1 Prupe.3G182100_v2.0.a1 Prupe.3G182200_v2.0.a1 Prupe.3G182300_v2.0.a1 Prupe.3G182400_v2.0.a1 Prupe.3G182500_v2.0.a1 Prupe.3G182600_v2.0.a1 Prupe.3G182700_v2.0.a1 Prupe.5G051200_v2.0.a1 Prupe.5G051300_v2.0.a1 Prupe.5G051400_v2.0.a1 Prupe.5G051500_v2.0.a1 Prupe.5G051600_v2.0.a1 Prupe.5G051600_v2.0.a1 Prupe.5G051800_v2.0.a1
pyrus_communis pycom09g06470 pycom09g06490 pycom09g06510 pycom09g06520 pycom09g06570 pycom09g06580 pycom17g12440 pycom17g12450 pycom17g12530
rosa_chinensis RchiOBHm_Chr2g0117481 RchiOBHm_Chr2g0128321 RchiOBHm_Chr2g0128331 RchiOBHm_Chr2g0128581 RchiOBHm_Chr2g0128591 RchiOBHm_Chr2g0150651 RchiOBHm_Chr2g0150661 RchiOBHm_Chr2g0150741 RchiOBHm_Chr2g0150781 RchiOBHm_Chr2g0152581 RchiOBHm_Chr2g0152591 RchiOBHm_Chr2g0152641 RchiOBHm_Chr2g0152661 RchiOBHm_Chr2g0152711 RchiOBHm_Chr2g0152731 RchiOBHm_Chr2g0152871 RchiOBHm_Chr2g0152881 RchiOBHm_Chr2g0152901 RchiOBHm_Chr2g0152921 RchiOBHm_Chr2g0152931 RchiOBHm_Chr2g0152941 RchiOBHm_Chr3g0469621 RchiOBHm_Chr3g0469631 RchiOBHm_Chr5g0015591 RchiOBHm_Chr5g0046061 RchiOBHm_Chr5g0047341 RchiOBHm_Chr5g0063341 RchiOBHm_Chr5g0063351 RchiOBHm_Chr6g0264381 RchiOBHm_Chr7g0191741 RchiOBHm_Chr7g0210751 RchiOBHm_Chr7g0221871 RchiOBHm_Chr7g0225671 RchiOBHm_Chr7g0225891 RchiOBHm_Chr7g0225901 RchiOBHm_Chr7g0225961 RchiOBHm_Chr7g0225971 RchiOBHm_Chr7g0234031 RchiOBHm_Chr7g0234041
rosa_laevigata RLG00000001780 RLG00000001784 RLG00000001785 RLG00000001788 RLG00000001789 RLG00000001793 RLG00000001794 RLG00000002941 RLG00000004430 RLG00000014259 RLG00000018349 RLG00000019001 RLG00000019005 RLG00000019011 RLG00000020503 RLG00000020507 RLG00000020648 RLG00000020649 RLG00000020651 RLG00000020652 RLG00000020653 RLG00000020655 RLG00000020656 RLG00000020657 RLG00000023668 RLG00000024331 RLG00000034386 RLG00000035624 RLG00000035625
rosa_multiflora Rmu_co8401977.1_g000001 Rmu_co8409989.1_g000001 Rmu_co8432067.1_g000001 Rmu_co8491011.1_g000001 Rmu_sc0000580.1_g000085 Rmu_sc0000740.1_g000012 Rmu_sc0000740.1_g000014 Rmu_sc0000837.1_g000041 Rmu_sc0000837.1_g000077 Rmu_sc0001552.1_g000008 Rmu_sc0001617.1_g000001 Rmu_sc0002082.1_g000006 Rmu_sc0002082.1_g000007 Rmu_sc0002082.1_g000022 Rmu_sc0002989.1_g000013 Rmu_sc0003064.1_g000011 Rmu_sc0003127.1_g000003 Rmu_sc0003127.1_g000014 Rmu_sc0003127.1_g000028 Rmu_sc0003127.1_g000032 Rmu_sc0003127.1_g000034 Rmu_sc0003127.1_g000035 Rmu_sc0003127.1_g000054 Rmu_sc0003127.1_g000055 Rmu_sc0003465.1_g000034 Rmu_sc0005223.1_g000021 Rmu_sc0005302.1_g000004 Rmu_sc0005378.1_g000005 Rmu_sc0005378.1_g000007 Rmu_sc0005378.1_g000017 Rmu_sc0005378.1_g000034 Rmu_sc0005378.1_g000039 Rmu_sc0005378.1_g000042 Rmu_sc0005378.1_g000056 Rmu_sc0005378.1_g000057 Rmu_sc0005378.1_g000058 Rmu_sc0006483.1_g000013 Rmu_sc0008775.1_g000006 Rmu_sc0008775.1_g000011 Rmu_sc0009104.1_g000010 Rmu_sc0009104.1_g000011 Rmu_sc0009104.1_g000020 Rmu_sc0010960.1_g000006 Rmu_sc0011737.1_g000002 Rmu_sc0011737.1_g000004 Rmu_sc0012875.1_g000003 Rmu_sc0013122.1_g000002 Rmu_sc0018944.1_g000002 Rmu_sc0020155.1_g000001 Rmu_sc0020156.1_g000001 Rmu_ssc0000233.1_g000012 Rmu_ssc0000233.1_g000013 Rmu_ssc0000233.1_g000030 Rmu_ssc0000233.1_g000044 Rmu_ssc0000233.1_g000047 Rmu_ssc0000233.1_g000052 Rmu_ssc0000233.1_g000054 Rmu_ssc0000233.1_g000055 Rmu_ssc0000233.1_g000080 Rmu_ssc0000233.1_g000082 Rmu_ssc0000233.1_g000087 Rmu_ssc0000233.1_g000094 Rmu_ssc0000480.1_g000060 Rmu_ssc0000480.1_g000061
rosa_roxburghii Rroxscaffold_1G00017360 Rroxscaffold_1G00017370 Rroxscaffold_1G00060880 Rroxscaffold_2G00095370 Rroxscaffold_2G00095420 Rroxscaffold_2G00095450 Rroxscaffold_2G00095460 Rroxscaffold_2G00095490 Rroxscaffold_2G00095560 Rroxscaffold_2G00095570 Rroxscaffold_2G00096960 Rroxscaffold_2G00097010 Rroxscaffold_2G00126500 Rroxscaffold_3G00233390 Rroxscaffold_3G00233580 Rroxscaffold_3G00263590 Rroxscaffold_6G00411660
rosa_rugosa Rorug01G0142700.1 Rorug01G0148600.1 Rorug02G0212800 Rorug02G0422400 Rorug02G0434700 Rorug02G0434800 Rorug02G0435000 Rorug02G0435200 Rorug02G0435300 Rorug02G0435400 Rorug02G0435700 Rorug02G0435800 Rorug02G0436200 Rorug02G0436300 Rorug03G0102800 Rorug04G0123600 Rorug04G0123700 Rorug04G0123800 Rorug04G0124000 Rorug04G0124000 Rorug04G0124500 Rorug04G0124700 Rorug04G0124900 Rorug05G0028600.1 Rorug05G0356100 Rorug05G0356800 Rorug06G0011900 Rorug07G0092900 Rorug07G0122800 Rorug07G0232500 Rorug07G0232600 Rorug07G0232700
rosa_samantha Rh1AG408900 Rh2AG332700 Rh2AG333400 Rh2AG482100 Rh2AG482200 Rh2AG482500 Rh2AG496000 Rh2AG496100 Rh2AG496200 Rh2AG496300 Rh2AG497100 Rh2AG497200 Rh2AG497400 Rh2BG280300 Rh2BG340500 Rh2BG494400 Rh2BG494900 Rh2BG507800 Rh2BG507900 Rh2BG508000 Rh2BG508100 Rh2BG508300 Rh2BG508500 Rh2BG508700 Rh2BG509200 Rh2BG512700 Rh2CG271900 Rh2CG319100 Rh2CG319400 Rh2CG357200 Rh2CG468400 Rh2CG468500 Rh2CG468800 Rh2CG482200 Rh2CG482300 Rh2CG482400 Rh2CG482500 Rh2CG483200 Rh2CG483300 Rh2CG483500 Rh2CG483600 Rh2DG294600 Rh2DG357100 Rh2DG357700 Rh2DG503400 Rh2DG504300 Rh2DG504900 Rh2DG505500 Rh2DG505900 Rh2DG519000 Rh2DG519100 Rh2DG519300 Rh2DG519400 Rh2DG520000 Rh2DG520200 Rh2DG520500 Rh2DG521000 Rh2DG524300 Rh3AG152400 Rh3AG334400 Rh3BG176100 Rh3CG167200 Rh3DG199400 Rh3DG199500 Rh5AG415900 Rh5BG430800 Rh5CG454300 Rh5DG444600 Rh6AG247500 Rh6AG247700 Rh7AG120600 Rh7AG369800 Rh7AG370800 Rh7AG468300 Rh7BG366400 Rh7CG125200 Rh7CG388700 Rh7CG389400 Rh7CG459600 Rh7DG123300 Rh7DG123400 Rh7DG123800 Rh7DG123900 Rh7DG377200
rosa_wichuraiana Rw0G004850 Rw0G004870 Rw0G013120 Rw1G013520 Rw2G026850 Rw2G026910 Rw2G027120 Rw2G039340 Rw2G039360 Rw2G039410 Rw2G039420 Rw2G039440 Rw2G039520 Rw2G040810 Rw2G040830 Rw2G040850 Rw2G040860 Rw2G040880 Rw2G041210 Rw2G041220 Rw2G041240 Rw2G041250 Rw3G014370 Rw5G010520 Rw5G039070 Rw6G021410 Rw6G021420 Rw7G010280 Rw7G021780 Rw7G031820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 2196
Acc16I TGCGCA 1 cut(s) 2064
Acc36I ACCTGC 2 cut(s) 1069, 2267
AccBSI CCGCTC 1 cut(s) 327
AccI GTMKAC 1 cut(s) 1625
AccII CGCG 2 cut(s) 1612, 2120
AclI AACGTT 1 cut(s) 1033
AclWI GGATC 1 cut(s) 1755
AcoI YGGCCR 2 cut(s) 328, 1330
AcsI RAATTY 5 cut(s) 179, 1323, 1518, 1538, 2173
AcyI GRCGYC 1 cut(s) 2193
AfiI CCNNNNNNNGG 6 cut(s) 43, 540, 829, 1045, 1585, 1929
AhdI GACNNNNNGTC 1 cut(s) 1696
AjnI CCWGG 3 cut(s) 100, 871, 1332
AjuI GAANNNNNNNTTGG 2 cut(s) 395, 427
Alw21I GWGCWC 3 cut(s) 869, 1645, 1899
Alw26I GTCTC 4 cut(s) 19, 545, 1066, 2184
AlwI GGATC 1 cut(s) 1755
AlwNI CAGNNNCTG 1 cut(s) 97
AoxI GGCC 6 cut(s) 3, 93, 328, 664, 1330, 1339
ApeKI GCWGC 6 cut(s) 105, 277, 639, 1064, 1133, 1664
ApoI RAATTY 5 cut(s) 179, 1323, 1518, 1538, 2173
AseI ATTAAT 1 cut(s) 1443
Asp700I GAANNNNTTC 3 cut(s) 717, 788, 1558
AspLEI GCGC 2 cut(s) 85, 2065
AspS9I GGNCC 6 cut(s) 94, 1147, 1303, 1822, 1885, 2252
AsuC2I CCSGG 4 cut(s) 481, 824, 1688, 2250
AsuHPI GGTGA 5 cut(s) 284, 305, 1253, 2206, 2238
AvaII GGWCC 5 cut(s) 1147, 1303, 1822, 1885, 2252
BalI TGGCCA 1 cut(s) 1332
BanII GRGCYC 2 cut(s) 1645, 1899
BarI GAAGNNNNNNTAC 2 cut(s) 149, 181
BbsI GAAGAC 1 cut(s) 371
Bbv12I GWGCWC 3 cut(s) 869, 1645, 1899
BbvI GCAGC 6 cut(s) 92, 264, 651, 1076, 1120, 1676
BccI CCATC 6 cut(s) 344, 896, 1363, 1367, 2018, 2258
BceAI ACGGC 1 cut(s) 404
BciT130I CCWGG 3 cut(s) 102, 873, 1334
BclI TGATCA 4 cut(s) 265, 1083, 1243, 2158
BcnI CCSGG 4 cut(s) 481, 824, 1688, 2250
BcoDI GTCTC 4 cut(s) 19, 545, 1066, 2184
BfaI CTAG 4 cut(s) 60, 1068, 1124, 1952
BfmI CTRYAG 6 cut(s) 438, 637, 846, 1015, 1062, 2274
BfoI RGCGCY 1 cut(s) 86
BfuAI ACCTGC 2 cut(s) 1069, 2267
BglI GCCNNNNNGGC 1 cut(s) 1338
BlpI GCTNAGC 1 cut(s) 1893
BmcAI AGTACT 1 cut(s) 1832
Bme1390I CCNGG 7 cut(s) 102, 481, 824, 873, 1334, 1688, 2250
Bme18I GGWCC 5 cut(s) 1147, 1303, 1822, 1885, 2252
BmeRI GACNNNNNGTC 1 cut(s) 1696
BmgT120I GGNCC 6 cut(s) 94, 1147, 1303, 1822, 1885, 2252
BmiI GGNNCC 1 cut(s) 1824
BmrFI CCNGG 7 cut(s) 102, 481, 824, 873, 1334, 1688, 2250
BmrI ACTGGG 1 cut(s) 391
BmsI GCATC 4 cut(s) 825, 972, 1708, 2143
BmuI ACTGGG 1 cut(s) 391
BpiI GAAGAC 1 cut(s) 371
BplI GAGNNNNNCTC 2 cut(s) 225, 257
BpmI CTGGAG 3 cut(s) 608, 1310, 1659
Bpu1102I GCTNAGC 1 cut(s) 1893
BpuEI CTTGAG 1 cut(s) 1995
BpuMI CCSGG 4 cut(s) 481, 824, 1688, 2250
BsaAI YACGTR 1 cut(s) 295
BsaBI GATNNNNATC 1 cut(s) 2157
BsaHI GRCGYC 1 cut(s) 2193
BsaJI CCNNGG 6 cut(s) 457, 1299, 1333, 1342, 1974, 2118
BsaWI WCCGGW 1 cut(s) 1904
BsaXI ACNNNNNCTCC 4 cut(s) 515, 545, 2124, 2154
Bsc4I CCNNNNNNNGG 6 cut(s) 43, 540, 829, 1045, 1585, 1929
Bse1I ACTGG 5 cut(s) 215, 397, 667, 1102, 1916
Bse3DI GCAATG 2 cut(s) 1128, 2236
Bse8I GATNNNNATC 1 cut(s) 2157
BseBI CCWGG 3 cut(s) 102, 873, 1334
BseDI CCNNGG 6 cut(s) 457, 1299, 1333, 1342, 1974, 2118
BseGI GGATG 3 cut(s) 558, 1378, 1723
BseJI GATNNNNATC 1 cut(s) 2157
BseLI CCNNNNNNNGG 6 cut(s) 43, 540, 829, 1045, 1585, 1929
BseMI GCAATG 2 cut(s) 1128, 2236
BseMII CTCAG 4 cut(s) 104, 1577, 1674, 1884
BseNI ACTGG 5 cut(s) 215, 397, 667, 1102, 1916
BseRI GAGGAG 1 cut(s) 1601
BseX3I CGGCCG 1 cut(s) 328
BseXI GCAGC 6 cut(s) 92, 264, 651, 1076, 1120, 1676
BseYI CCCAGC 2 cut(s) 373, 563
Bsh1236I CGCG 2 cut(s) 1612, 2120
Bsh1285I CGRYCG 2 cut(s) 331, 1423
BshFI GGCC 6 cut(s) 5, 95, 330, 666, 1332, 1341
BsiEI CGRYCG 2 cut(s) 331, 1423
BsiHKAI GWGCWC 3 cut(s) 869, 1645, 1899
BsiSI CCGG 6 cut(s) 480, 534, 823, 1687, 1905, 2250
BslFI GGGAC 3 cut(s) 981, 1703, 1765
BslI CCNNNNNNNGG 6 cut(s) 43, 540, 829, 1045, 1585, 1929
BsmAI GTCTC 4 cut(s) 19, 545, 1066, 2184
BsmBI CGTCTC 1 cut(s) 2184
BsmFI GGGAC 3 cut(s) 981, 1703, 1765
BsmI GAATGC 1 cut(s) 929
BsnI GGCC 6 cut(s) 5, 95, 330, 666, 1332, 1341
Bsp1286I GDGCHC 3 cut(s) 869, 1645, 1899
Bsp1407I TGTACA 1 cut(s) 2293
Bsp143I GATC 8 cut(s) 265, 390, 1050, 1083, 1243, 1420, 1760, 2158
Bsp1720I GCTNAGC 1 cut(s) 1893
Bsp19I CCATGG 1 cut(s) 1974
BspANI GGCC 6 cut(s) 5, 95, 330, 666, 1332, 1341
BspCNI CTCAG 4 cut(s) 103, 1576, 1673, 1885
BspFNI CGCG 2 cut(s) 1612, 2120
BspHI TCATGA 2 cut(s) 1573, 2203
BspLI GGNNCC 1 cut(s) 1824
BspMAI CTGCAG 4 cut(s) 442, 641, 1066, 2278
BspMI ACCTGC 2 cut(s) 1069, 2267
BspPI GGATC 1 cut(s) 1755
BsrBI CCGCTC 1 cut(s) 327
BsrDI GCAATG 2 cut(s) 1128, 2236
BsrGI TGTACA 1 cut(s) 2293
BsrI ACTGG 5 cut(s) 215, 397, 667, 1102, 1916
BssECI CCNNGG 6 cut(s) 457, 1299, 1333, 1342, 1974, 2118
BssMI GATC 8 cut(s) 265, 390, 1050, 1083, 1243, 1420, 1760, 2158
BssNI GRCGYC 1 cut(s) 2193
BssT1I CCWWGG 2 cut(s) 1342, 1974
Bst2UI CCWGG 3 cut(s) 102, 873, 1334
Bst4CI ACNGT 4 cut(s) 272, 1351, 1795, 2322
Bst6I CTCTTC 1 cut(s) 462
BstACI GRCGYC 1 cut(s) 2193
BstAPI GCANNNNNTGC 1 cut(s) 1739
BstAUI TGTACA 1 cut(s) 2293
BstBAI YACGTR 1 cut(s) 295
BstC8I GCNNGC 2 cut(s) 796, 869
BstDEI CTNAG 5 cut(s) 90, 1563, 1660, 1893, 2074
BstDSI CCRYGG 3 cut(s) 1299, 1974, 2118
BstF5I GGATG 3 cut(s) 558, 1378, 1723
BstFNI CGCG 2 cut(s) 1612, 2120
BstH2I RGCGCY 1 cut(s) 86
BstHHI GCGC 2 cut(s) 85, 2065
BstKTI GATC 8 cut(s) 268, 393, 1053, 1086, 1246, 1423, 1763, 2161
BstMAI GTCTC 4 cut(s) 19, 545, 1066, 2184
BstMBI GATC 8 cut(s) 265, 390, 1050, 1083, 1243, 1420, 1760, 2158
BstMCI CGRYCG 2 cut(s) 331, 1423
BstMWI GCNNNNNNNGC 7 cut(s) 53, 510, 800, 1133, 1338, 1739, 2060
BstNI CCWGG 3 cut(s) 102, 873, 1334
BstNSI RCATGY 2 cut(s) 490, 798
BstSCI CCNGG 7 cut(s) 100, 479, 822, 871, 1332, 1686, 2248
BstSFI CTRYAG 6 cut(s) 438, 637, 846, 1015, 1062, 2274
BstSNI TACGTA 1 cut(s) 295
BstUI CGCG 2 cut(s) 1612, 2120
BstV1I GCAGC 6 cut(s) 92, 264, 651, 1076, 1120, 1676
BstV2I GAAGAC 1 cut(s) 371
BstX2I RGATCY 1 cut(s) 1760
BstXI CCANNNNNNTGG 1 cut(s) 902
BstYI RGATCY 1 cut(s) 1760
BstZI CGGCCG 1 cut(s) 328
BsuRI GGCC 6 cut(s) 5, 95, 330, 666, 1332, 1341
BtgI CCRYGG 3 cut(s) 1299, 1974, 2118
BtsCI GGATG 3 cut(s) 558, 1378, 1723
BveI ACCTGC 2 cut(s) 1069, 2267
Cac8I GCNNGC 2 cut(s) 796, 869
CaiI CAGNNNCTG 1 cut(s) 97
CciI TCATGA 2 cut(s) 1573, 2203
CciNI GCGGCCGC 1 cut(s) 328
CfoI GCGC 2 cut(s) 85, 2065
Cfr13I GGNCC 6 cut(s) 94, 1147, 1303, 1822, 1885, 2252
Cfr42I CCGCGG 1 cut(s) 2121
CseI GACGC 2 cut(s) 440, 592
DdeI CTNAG 5 cut(s) 90, 1563, 1660, 1893, 2074
DpnI GATC 8 cut(s) 267, 392, 1052, 1085, 1245, 1422, 1762, 2160
DpnII GATC 8 cut(s) 265, 390, 1050, 1083, 1243, 1420, 1760, 2158
DraI TTTAAA 2 cut(s) 694, 1198
DriI GACNNNNNGTC 1 cut(s) 1696
EaeI YGGCCR 2 cut(s) 328, 1330
EagI CGGCCG 1 cut(s) 328
Eam1104I CTCTTC 1 cut(s) 462
Eam1105I GACNNNNNGTC 1 cut(s) 1696
EarI CTCTTC 1 cut(s) 462
Ecl136II GAGCTC 2 cut(s) 1643, 1897
EclXI CGGCCG 1 cut(s) 328
Eco105I TACGTA 1 cut(s) 295
Eco130I CCWWGG 2 cut(s) 1342, 1974
Eco24I GRGCYC 2 cut(s) 1645, 1899
Eco47I GGWCC 5 cut(s) 1147, 1303, 1822, 1885, 2252
Eco52I CGGCCG 1 cut(s) 328
Eco53kI GAGCTC 2 cut(s) 1643, 1897
EcoICRI GAGCTC 2 cut(s) 1643, 1897
EcoO109I RGGNCCY 1 cut(s) 94
EcoRI GAATTC 2 cut(s) 179, 1323
EcoRII CCWGG 3 cut(s) 100, 871, 1332
EcoT14I CCWWGG 2 cut(s) 1342, 1974
EcoT22I ATGCAT 1 cut(s) 818
EcoT38I GRGCYC 2 cut(s) 1645, 1899
ErhI CCWWGG 2 cut(s) 1342, 1974
Esp3I CGTCTC 1 cut(s) 2184
FaqI GGGAC 3 cut(s) 981, 1703, 1765
FauNDI CATATG 1 cut(s) 494
FbaI TGATCA 4 cut(s) 265, 1083, 1243, 2158
FblI GTMKAC 1 cut(s) 1625
FokI GGATG 3 cut(s) 545, 1385, 1730
FriOI GRGCYC 2 cut(s) 1645, 1899
FspBI CTAG 4 cut(s) 60, 1068, 1124, 1952
FspI TGCGCA 1 cut(s) 2064
GlaI GCGC 2 cut(s) 84, 2064
GsaI CCCAGC 2 cut(s) 377, 567
GsuI CTGGAG 3 cut(s) 608, 1310, 1659
HaeII RGCGCY 1 cut(s) 86
HaeIII GGCC 6 cut(s) 5, 95, 330, 666, 1332, 1341
HapII CCGG 6 cut(s) 480, 534, 823, 1687, 1905, 2250
HgaI GACGC 2 cut(s) 440, 592
HhaI GCGC 2 cut(s) 85, 2065
Hin1I GRCGYC 1 cut(s) 2193
Hin6I GCGC 2 cut(s) 83, 2063
HinP1I GCGC 2 cut(s) 83, 2063
HindIII AAGCTT 1 cut(s) 2220
HinfI GANTC 5 cut(s) 238, 842, 1074, 1456, 1984
HpaII CCGG 6 cut(s) 480, 534, 823, 1687, 1905, 2250
HphI GGTGA 5 cut(s) 284, 305, 1253, 2206, 2238
Hpy166II GTNNAC 4 cut(s) 1354, 1626, 1701, 1870
Hpy188I TCNGA 5 cut(s) 324, 458, 1083, 2198, 2290
Hpy188III TCNNGA 7 cut(s) 1393, 1424, 1574, 1758, 1900, 2003, 2204
Hpy8I GTNNAC 4 cut(s) 1354, 1626, 1701, 1870
HpyAV CCTTC 6 cut(s) 151, 658, 778, 875, 1976, 2082
HpyCH4III ACNGT 4 cut(s) 272, 1351, 1795, 2322
HpyCH4IV ACGT 5 cut(s) 294, 959, 1033, 2095, 2193
HpyF10VI GCNNNNNNNGC 7 cut(s) 53, 510, 800, 1133, 1338, 1739, 2060
HpyF3I CTNAG 5 cut(s) 90, 1563, 1660, 1893, 2074
HpySE526I ACGT 5 cut(s) 294, 959, 1033, 2095, 2193
Hsp92I GRCGYC 1 cut(s) 2193
HspAI GCGC 2 cut(s) 83, 2063
Ksp22I TGATCA 4 cut(s) 265, 1083, 1243, 2158
KspI CCGCGG 1 cut(s) 2121
Kzo9I GATC 8 cut(s) 265, 390, 1050, 1083, 1243, 1420, 1760, 2158
LmnI GCTCC 5 cut(s) 536, 1222, 1285, 1640, 1978
Lsp1109I GCAGC 6 cut(s) 92, 264, 651, 1076, 1120, 1676
LweI GCATC 4 cut(s) 825, 972, 1708, 2143
MaeI CTAG 4 cut(s) 60, 1068, 1124, 1952
MaeII ACGT 5 cut(s) 294, 959, 1033, 2095, 2193
MaeIII GTNAC 4 cut(s) 164, 247, 428, 851
MalI GATC 8 cut(s) 267, 392, 1052, 1085, 1245, 1422, 1762, 2160
MbiI CCGCTC 1 cut(s) 327
MboI GATC 8 cut(s) 265, 390, 1050, 1083, 1243, 1420, 1760, 2158
MboII GAAGA 7 cut(s) 166, 371, 476, 479, 1227, 2048, 2274
MfeI CAATTG 2 cut(s) 190, 741
MflI RGATCY 1 cut(s) 1760
MhlI GDGCHC 3 cut(s) 869, 1645, 1899
MlsI TGGCCA 1 cut(s) 1332
MluNI TGGCCA 1 cut(s) 1332
MlyI GAGTC 2 cut(s) 851, 1068
Mox20I TGGCCA 1 cut(s) 1332
Mph1103I ATGCAT 1 cut(s) 818
MroXI GAANNNNTTC 3 cut(s) 717, 788, 1558
MscI TGGCCA 1 cut(s) 1332
MseI TTAA 9 cut(s) 630, 693, 732, 939, 1197, 1410, 1443, 1470, 1488
MslI CAYNNNNRTG 2 cut(s) 900, 1479
Msp20I TGGCCA 1 cut(s) 1332
MspA1I CMGCKG 2 cut(s) 567, 2120
MspI CCGG 6 cut(s) 480, 534, 823, 1687, 1905, 2250
MspR9I CCNGG 7 cut(s) 102, 481, 824, 873, 1334, 1688, 2250
MunI CAATTG 2 cut(s) 190, 741
Mva1269I GAATGC 1 cut(s) 929
MvaI CCWGG 3 cut(s) 102, 873, 1334
MvnI CGCG 2 cut(s) 1612, 2120
MwoI GCNNNNNNNGC 7 cut(s) 53, 510, 800, 1133, 1338, 1739, 2060
NciI CCSGG 4 cut(s) 481, 824, 1688, 2250
NcoI CCATGG 1 cut(s) 1974
NdeI CATATG 1 cut(s) 494
NdeII GATC 8 cut(s) 265, 390, 1050, 1083, 1243, 1420, 1760, 2158
NlaIV GGNNCC 1 cut(s) 1824
NmuCI GTSAC 1 cut(s) 428
NotI GCGGCCGC 1 cut(s) 328
NsbI TGCGCA 1 cut(s) 2064
NsiI ATGCAT 1 cut(s) 818
NspI RCATGY 2 cut(s) 490, 798
PaeI GCATGC 1 cut(s) 798
PagI TCATGA 2 cut(s) 1573, 2203
PcsI WCGNNNNNNNCGW 1 cut(s) 1429
PctI GAATGC 1 cut(s) 929
PdmI GAANNNNTTC 3 cut(s) 717, 788, 1558
PfeI GAWTC 3 cut(s) 238, 1456, 1984
PflFI GACNNNGTC 1 cut(s) 1930
Ple19I CGATCG 1 cut(s) 1423
PleI GAGTC 2 cut(s) 850, 1068
PpsI GAGTC 2 cut(s) 850, 1068
Ppu21I YACGTR 1 cut(s) 295
PshBI ATTAAT 1 cut(s) 1443
Psp124BI GAGCTC 2 cut(s) 1645, 1899
Psp1406I AACGTT 1 cut(s) 1033
Psp6I CCWGG 3 cut(s) 100, 871, 1332
PspFI CCCAGC 2 cut(s) 373, 563
PspGI CCWGG 3 cut(s) 100, 871, 1332
PspN4I GGNNCC 1 cut(s) 1824
PspPI GGNCC 6 cut(s) 94, 1147, 1303, 1822, 1885, 2252
PsrI GAACNNNNNNTAC 2 cut(s) 2263, 2295
PstI CTGCAG 4 cut(s) 442, 641, 1066, 2278
PstNI CAGNNNCTG 1 cut(s) 97
PsuI RGATCY 1 cut(s) 1760
PsyI GACNNNGTC 1 cut(s) 1930
PvuI CGATCG 1 cut(s) 1423
RseI CAYNNNNRTG 2 cut(s) 900, 1479
SacI GAGCTC 2 cut(s) 1645, 1899
SacII CCGCGG 1 cut(s) 2121
SaqAI TTAA 9 cut(s) 630, 693, 732, 939, 1197, 1410, 1443, 1470, 1488
Sau3AI GATC 8 cut(s) 265, 390, 1050, 1083, 1243, 1420, 1760, 2158
Sau96I GGNCC 6 cut(s) 94, 1147, 1303, 1822, 1885, 2252
ScaI AGTACT 1 cut(s) 1832
SchI GAGTC 2 cut(s) 851, 1068
ScrFI CCNGG 7 cut(s) 102, 481, 824, 873, 1334, 1688, 2250
SduI GDGCHC 3 cut(s) 869, 1645, 1899
SfaNI GCATC 4 cut(s) 825, 972, 1708, 2143
SfcI CTRYAG 6 cut(s) 438, 637, 846, 1015, 1062, 2274
SfiI GGCCNNNNNGGCC 1 cut(s) 1338
Sfr303I CCGCGG 1 cut(s) 2121
SgrBI CCGCGG 1 cut(s) 2121
SinI GGWCC 5 cut(s) 1147, 1303, 1822, 1885, 2252
SmiMI CAYNNNNRTG 2 cut(s) 900, 1479
SmlI CTYRAG 1 cut(s) 2010
SmoI CTYRAG 1 cut(s) 2010
SnaBI TACGTA 1 cut(s) 295
SphI GCATGC 1 cut(s) 798
SspI AATATT 1 cut(s) 1119
SspMI CTAG 4 cut(s) 60, 1068, 1124, 1952
SstI GAGCTC 2 cut(s) 1645, 1899
StyD4I CCNGG 7 cut(s) 100, 479, 822, 871, 1332, 1686, 2248
StyI CCWWGG 2 cut(s) 1342, 1974
TaaI ACNGT 4 cut(s) 272, 1351, 1795, 2322
TaiI ACGT 5 cut(s) 297, 962, 1036, 2098, 2196
TaqI TCGA 3 cut(s) 775, 1934, 2137
TatI WGTACW 6 cut(s) 62, 1566, 1725, 1798, 1830, 2293
TauI GCSGC 7 cut(s) 59, 123, 330, 333, 1104, 2120, 2123
TfiI GAWTC 3 cut(s) 238, 1456, 1984
Tru1I TTAA 9 cut(s) 630, 693, 732, 939, 1197, 1410, 1443, 1470, 1488
Tru9I TTAA 9 cut(s) 630, 693, 732, 939, 1197, 1410, 1443, 1470, 1488
TseFI GTSAC 1 cut(s) 428
TseI GCWGC 6 cut(s) 105, 277, 639, 1064, 1133, 1664
Tsp45I GTSAC 1 cut(s) 428
TspGWI ACGGA 3 cut(s) 250, 969, 1316
Tth111I GACNNNGTC 1 cut(s) 1930
VpaK11BI GGWCC 5 cut(s) 1147, 1303, 1822, 1885, 2252
VspI ATTAAT 1 cut(s) 1443
XapI RAATTY 5 cut(s) 179, 1323, 1518, 1538, 2173
XceI RCATGY 2 cut(s) 490, 798
XmiI GTMKAC 1 cut(s) 1625
XmnI GAANNNNTTC 3 cut(s) 717, 788, 1558
XspI CTAG 4 cut(s) 60, 1068, 1124, 1952
ZraI GACGTC 1 cut(s) 2194
ZrmI AGTACT 1 cut(s) 1832
Zsp2I ATGCAT 1 cut(s) 818
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.