Rh3DG199500

Wall-associated receptor kinase galacturonan-binding

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Reverse (-)
18068541 .. 18074785
6245 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG199500.1

Sequence Viewer

Length: 1284 bp
ATGCAATTGCTAGTTCAGCATATGGTTATGTTCATCATTCTATTGTTATTTCACTGCCGCATAAGTAGAGCATCATCACCACCGAAGATAGCGAAGGAGAATTGTACATCGAGGTGCGGAGGTGTTAACATCCCATACCCTTTTGGGATTGGACCTAAAAACCATTGTTACCTTGACGAGTGGTACGAAATAGAATGCAACCTTTCTGTTCCAGTAGCGAAGCCGTTCTTGAGGCGTCTACAACTCGAGGTGCTGAGTATTTCTGTTGAAAACGCCACGCTTCAGGTTACAAGCCCTATCACTTACTTTAGCTGCAAGGGGAAGCAATCGCGGCCAGCGGCAAATCTGACGGGAAGCCCTTTTATGTACTCTCTTCAAATTAACAGTTTCGTTGCAGTTAGTTGTGACTTGTTTGCCTCGCTACGCACAGGTTCAAAGCACACTGTTGCTGGGTGTACGTCAACTTGTATTTCAGGTGCAATTCTCGATGTTGATATGTGTGAGTATGGCTTTAACTGTTGCCGGACTGCCCTTTCCCAAGATATCAATAATTTCAGCGTCATAAAAGAACCAGATGAAACAAGAAGAAATGCGACAGACTGCGAGGACTATGCATTCCTGGTTGACAAACAGTGGTTTGCAGACAATAAATCAGACTTCACAGCTATCAAGGGTATGGACGTCGTTCCTGTGATGTTAGACTGGAGCTTAAGCCTAGAAAATAATAAGTCATTGATCAAACAATTTGAAGCACTCCCCAGCTCGAAAGACCATAGAAGCCCGCATGACCCAACACCCACATGCGACAAAATGGATGCTGTTCCGTCTTTCAATCACACATGGTATCGATGTCTTTGTCCGGCAGGCTTTGAAGGAAATCCATACCTTCTCCAACGTTGTCAAGATATAGATGAATGCAAGGATAGTAATCCGTGTGCGAGTCTTGACCCTAATATTACTACTGCATGGAATATTAAAGATGCCAAATGTAACAACACTGTCGGGGGTCATACATGCTACTCAGATAGAACAGGGGAAACCTGCGAAGTTTTTGCCATTGACACCGTTGCCAAGTGCTACAGAAGAAGTACGCCTCACTCACAGCTCAAGCCTATTCTCTATGTCACTAACCTTGCTATGAGCTTTAAATCGGGACTCTCGGTCAAATTGAGGATCATCAAGATTCACAGGATCGCCATAAAAGAAATCGGGAACCACCACAAAAAATCCAGTTGCAGCAACTTTATCCGTAGGTTTCCTTGTTCAAAAGACAATGTGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

427

Amino Acids

47.86

Weight (kDa)

8.32

Isoelectric Point (pI)

49.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 35 - 97 3.7e-12 Wall-associated receptor kinase galacturonan-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000052)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16090 AT1G16110 AT1G16120 AT1G16130 AT1G16150 AT1G16160 AT1G16260 AT1G16260 AT1G16260 AT1G79670 AT1G79670
fragaria_vesca FvH4_1g22960 FvH4_3g09860 FvH4_3g10284 FvH4_3g10284 FvH4_3g10540 FvH4_3g24040 FvH4_3g35290 FvH4_3g35290 FvH4_5g06860 FvH4_5g06940 FvH4_6g15920 FvH4_6g15920 FvH4_6g37660 FvH4_6g37670 FvH4_6g37691 FvH4_6g37700 FvH4_6g37710 FvH4_6g38990 FvH4_6g39000 FvH4_6g39020 FvH4_6g39020 FvH4_6g39020 FvH4_6g39021 FvH4_6g39030 FvH4_6g39030 FvH4_6g39031 FvH4_6g39032 FvH4_6g45200 FvH4_6g45200
malus_domestica MD08G1107900.v1.1 MD09G1145100.v1.1 MD09G1145200.v1.1 MD09G1145300.v1.1 MD09G1145400.v1.1 MD09G1145500.v1.1 MD17G1131600.v1.1 MD17G1131700.v1.1 MD17G1131900.v1.1 MD17G1132000.v1.1
prunus_persica Prupe.1G188400_v2.0.a1 Prupe.1G188700_v2.0.a1 Prupe.3G180500_v2.0.a1 Prupe.3G180600_v2.0.a1 Prupe.3G180700_v2.0.a1 Prupe.3G181000_v2.0.a1 Prupe.3G181100_v2.0.a1 Prupe.3G181100_v2.0.a1 Prupe.3G181200_v2.0.a1 Prupe.3G181200_v2.0.a1 Prupe.3G181400_v2.0.a1 Prupe.3G181500_v2.0.a1 Prupe.3G181600_v2.0.a1 Prupe.3G181800_v2.0.a1 Prupe.3G181900_v2.0.a1 Prupe.3G182000_v2.0.a1 Prupe.3G182100_v2.0.a1 Prupe.3G182200_v2.0.a1 Prupe.3G182300_v2.0.a1 Prupe.3G182400_v2.0.a1 Prupe.3G182500_v2.0.a1 Prupe.3G182600_v2.0.a1 Prupe.3G182700_v2.0.a1 Prupe.5G051200_v2.0.a1 Prupe.5G051300_v2.0.a1 Prupe.5G051400_v2.0.a1 Prupe.5G051500_v2.0.a1 Prupe.5G051600_v2.0.a1 Prupe.5G051600_v2.0.a1 Prupe.5G051800_v2.0.a1
pyrus_communis pycom09g06470 pycom09g06490 pycom09g06510 pycom09g06520 pycom09g06570 pycom09g06580 pycom17g12440 pycom17g12450 pycom17g12530
rosa_chinensis RchiOBHm_Chr2g0117481 RchiOBHm_Chr2g0128321 RchiOBHm_Chr2g0128331 RchiOBHm_Chr2g0128581 RchiOBHm_Chr2g0128591 RchiOBHm_Chr2g0150651 RchiOBHm_Chr2g0150661 RchiOBHm_Chr2g0150741 RchiOBHm_Chr2g0150781 RchiOBHm_Chr2g0152581 RchiOBHm_Chr2g0152591 RchiOBHm_Chr2g0152641 RchiOBHm_Chr2g0152661 RchiOBHm_Chr2g0152711 RchiOBHm_Chr2g0152731 RchiOBHm_Chr2g0152871 RchiOBHm_Chr2g0152881 RchiOBHm_Chr2g0152901 RchiOBHm_Chr2g0152921 RchiOBHm_Chr2g0152931 RchiOBHm_Chr2g0152941 RchiOBHm_Chr3g0469621 RchiOBHm_Chr3g0469631 RchiOBHm_Chr5g0015591 RchiOBHm_Chr5g0046061 RchiOBHm_Chr5g0047341 RchiOBHm_Chr5g0063341 RchiOBHm_Chr5g0063351 RchiOBHm_Chr6g0264381 RchiOBHm_Chr7g0191741 RchiOBHm_Chr7g0210751 RchiOBHm_Chr7g0221871 RchiOBHm_Chr7g0225671 RchiOBHm_Chr7g0225891 RchiOBHm_Chr7g0225901 RchiOBHm_Chr7g0225961 RchiOBHm_Chr7g0225971 RchiOBHm_Chr7g0234031 RchiOBHm_Chr7g0234041
rosa_laevigata RLG00000001780 RLG00000001784 RLG00000001785 RLG00000001788 RLG00000001789 RLG00000001793 RLG00000001794 RLG00000002941 RLG00000004430 RLG00000014259 RLG00000018349 RLG00000019001 RLG00000019005 RLG00000019011 RLG00000020503 RLG00000020507 RLG00000020648 RLG00000020649 RLG00000020651 RLG00000020652 RLG00000020653 RLG00000020655 RLG00000020656 RLG00000020657 RLG00000023668 RLG00000024331 RLG00000034386 RLG00000035624 RLG00000035625
rosa_multiflora Rmu_co8401977.1_g000001 Rmu_co8409989.1_g000001 Rmu_co8432067.1_g000001 Rmu_co8491011.1_g000001 Rmu_sc0000580.1_g000085 Rmu_sc0000740.1_g000012 Rmu_sc0000740.1_g000014 Rmu_sc0000837.1_g000041 Rmu_sc0000837.1_g000077 Rmu_sc0001552.1_g000008 Rmu_sc0001617.1_g000001 Rmu_sc0002082.1_g000006 Rmu_sc0002082.1_g000007 Rmu_sc0002082.1_g000022 Rmu_sc0002989.1_g000013 Rmu_sc0003064.1_g000011 Rmu_sc0003127.1_g000003 Rmu_sc0003127.1_g000014 Rmu_sc0003127.1_g000028 Rmu_sc0003127.1_g000032 Rmu_sc0003127.1_g000034 Rmu_sc0003127.1_g000035 Rmu_sc0003127.1_g000054 Rmu_sc0003127.1_g000055 Rmu_sc0003465.1_g000034 Rmu_sc0005223.1_g000021 Rmu_sc0005302.1_g000004 Rmu_sc0005378.1_g000005 Rmu_sc0005378.1_g000007 Rmu_sc0005378.1_g000017 Rmu_sc0005378.1_g000034 Rmu_sc0005378.1_g000039 Rmu_sc0005378.1_g000042 Rmu_sc0005378.1_g000056 Rmu_sc0005378.1_g000057 Rmu_sc0005378.1_g000058 Rmu_sc0006483.1_g000013 Rmu_sc0008775.1_g000006 Rmu_sc0008775.1_g000011 Rmu_sc0009104.1_g000010 Rmu_sc0009104.1_g000011 Rmu_sc0009104.1_g000020 Rmu_sc0010960.1_g000006 Rmu_sc0011737.1_g000002 Rmu_sc0011737.1_g000004 Rmu_sc0012875.1_g000003 Rmu_sc0013122.1_g000002 Rmu_sc0018944.1_g000002 Rmu_sc0020155.1_g000001 Rmu_sc0020156.1_g000001 Rmu_ssc0000233.1_g000012 Rmu_ssc0000233.1_g000013 Rmu_ssc0000233.1_g000030 Rmu_ssc0000233.1_g000044 Rmu_ssc0000233.1_g000047 Rmu_ssc0000233.1_g000052 Rmu_ssc0000233.1_g000054 Rmu_ssc0000233.1_g000055 Rmu_ssc0000233.1_g000080 Rmu_ssc0000233.1_g000082 Rmu_ssc0000233.1_g000087 Rmu_ssc0000233.1_g000094 Rmu_ssc0000480.1_g000060 Rmu_ssc0000480.1_g000061
rosa_roxburghii Rroxscaffold_1G00017360 Rroxscaffold_1G00017370 Rroxscaffold_1G00060880 Rroxscaffold_2G00095370 Rroxscaffold_2G00095420 Rroxscaffold_2G00095450 Rroxscaffold_2G00095460 Rroxscaffold_2G00095490 Rroxscaffold_2G00095560 Rroxscaffold_2G00095570 Rroxscaffold_2G00096960 Rroxscaffold_2G00097010 Rroxscaffold_2G00126500 Rroxscaffold_3G00233390 Rroxscaffold_3G00233580 Rroxscaffold_3G00263590 Rroxscaffold_6G00411660
rosa_rugosa Rorug01G0142700.1 Rorug01G0148600.1 Rorug02G0212800 Rorug02G0422400 Rorug02G0434700 Rorug02G0434800 Rorug02G0435000 Rorug02G0435200 Rorug02G0435300 Rorug02G0435400 Rorug02G0435700 Rorug02G0435800 Rorug02G0436200 Rorug02G0436300 Rorug03G0102800 Rorug04G0123600 Rorug04G0123700 Rorug04G0123800 Rorug04G0124000 Rorug04G0124000 Rorug04G0124500 Rorug04G0124700 Rorug04G0124900 Rorug05G0028600.1 Rorug05G0356100 Rorug05G0356800 Rorug06G0011900 Rorug07G0092900 Rorug07G0122800 Rorug07G0232500 Rorug07G0232600 Rorug07G0232700
rosa_samantha Rh1AG408900 Rh2AG332700 Rh2AG333400 Rh2AG482100 Rh2AG482200 Rh2AG482500 Rh2AG496000 Rh2AG496100 Rh2AG496200 Rh2AG496300 Rh2AG497100 Rh2AG497200 Rh2AG497400 Rh2BG280300 Rh2BG340500 Rh2BG494400 Rh2BG494900 Rh2BG507800 Rh2BG507900 Rh2BG508000 Rh2BG508100 Rh2BG508300 Rh2BG508500 Rh2BG508700 Rh2BG509200 Rh2BG512700 Rh2CG271900 Rh2CG319100 Rh2CG319400 Rh2CG357200 Rh2CG468400 Rh2CG468500 Rh2CG468800 Rh2CG482200 Rh2CG482300 Rh2CG482400 Rh2CG482500 Rh2CG483200 Rh2CG483300 Rh2CG483500 Rh2CG483600 Rh2DG294600 Rh2DG357100 Rh2DG357700 Rh2DG503400 Rh2DG504300 Rh2DG504900 Rh2DG505500 Rh2DG505900 Rh2DG519000 Rh2DG519100 Rh2DG519300 Rh2DG519400 Rh2DG520000 Rh2DG520200 Rh2DG520500 Rh2DG521000 Rh2DG524300 Rh3AG152400 Rh3AG334400 Rh3BG176100 Rh3CG167200 Rh3DG199400 Rh3DG199500 Rh5AG415900 Rh5BG430800 Rh5CG454300 Rh5DG444600 Rh6AG247500 Rh6AG247700 Rh7AG120600 Rh7AG369800 Rh7AG370800 Rh7AG468300 Rh7BG366400 Rh7CG125200 Rh7CG388700 Rh7CG389400 Rh7CG459600 Rh7DG123300 Rh7DG123400 Rh7DG123800 Rh7DG123900 Rh7DG377200
rosa_wichuraiana Rw0G004850 Rw0G004870 Rw0G013120 Rw1G013520 Rw2G026850 Rw2G026910 Rw2G027120 Rw2G039340 Rw2G039360 Rw2G039410 Rw2G039420 Rw2G039440 Rw2G039520 Rw2G040810 Rw2G040830 Rw2G040850 Rw2G040860 Rw2G040880 Rw2G041210 Rw2G041220 Rw2G041240 Rw2G041250 Rw3G014370 Rw5G010520 Rw5G039070 Rw6G021410 Rw6G021420 Rw7G010280 Rw7G021780 Rw7G031820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 684
Acc36I ACCTGC 1 cut(s) 1049
AccI GTMKAC 1 cut(s) 238
AccII CGCG 1 cut(s) 331
AciI CCGC 5 cut(s) 58, 117, 331, 338, 782
AclI AACGTT 1 cut(s) 895
AclWI GGATC 2 cut(s) 1181, 1199
AcoI YGGCCR 1 cut(s) 332
AcuI CTGAAG 1 cut(s) 266
AcyI GRCGYC 2 cut(s) 235, 681
AfaI GTAC 5 cut(s) 106, 185, 368, 457, 1090
AflII CTTAAG 1 cut(s) 709
AgsI TTSAA 7 cut(s) 269, 377, 435, 749, 832, 872, 1266
AhdI GACNNNNNGTC 1 cut(s) 1160
AjnI CCWGG 1 cut(s) 618
AluBI AGCT 6 cut(s) 312, 665, 708, 762, 1105, 1143
AluI AGCT 6 cut(s) 312, 665, 708, 762, 1105, 1143
AlwI GGATC 2 cut(s) 1181, 1199
Ama87I CYCGRG 1 cut(s) 245
AoxI GGCC 1 cut(s) 332
ApeKI GCWGC 2 cut(s) 312, 1236
Asp700I GAANNNNTTC 1 cut(s) 224
AspS9I GGNCC 1 cut(s) 152
AsuHPI GGTGA 1 cut(s) 69
AvaI CYCGRG 1 cut(s) 245
AvaII GGWCC 1 cut(s) 152
BbvI GCAGC 2 cut(s) 299, 1248
BceAI ACGGC 1 cut(s) 208
BcgI CGANNNNNNTGC 4 cut(s) 593, 627, 1034, 1068
BciT130I CCWGG 1 cut(s) 620
BclI TGATCA 1 cut(s) 735
BfaI CTAG 2 cut(s) 11, 716
BfmI CTRYAG 1 cut(s) 1078
BfrI CTTAAG 1 cut(s) 709
BfuAI ACCTGC 1 cut(s) 1049
BisI GCNGC 5 cut(s) 58, 313, 332, 339, 1237
BlsI GCNGC 5 cut(s) 59, 314, 333, 340, 1238
Bme1390I CCNGG 1 cut(s) 620
Bme18I GGWCC 1 cut(s) 152
BmeRI GACNNNNNGTC 1 cut(s) 1160
BmeT110I CYCGRG 1 cut(s) 245
BmgT120I GGNCC 1 cut(s) 152
BmiI GGNNCC 1 cut(s) 1214
BmrFI CCNGG 1 cut(s) 620
BmsI GCATC 3 cut(s) 80, 805, 970
BpmI CTGGAG 1 cut(s) 724
BpuEI CTTGAG 2 cut(s) 250, 1091
Bsa29I ATCGAT 1 cut(s) 847
BsaBI GATNNNNATC 1 cut(s) 927
BsaHI GRCGYC 2 cut(s) 235, 681
Bse1I ACTGG 3 cut(s) 212, 707, 1230
Bse8I GATNNNNATC 1 cut(s) 927
BseBI CCWGG 1 cut(s) 620
BseCI ATCGAT 1 cut(s) 847
BseGI GGATG 2 cut(s) 129, 820
BseJI GATNNNNATC 1 cut(s) 927
BseMII CTCAG 2 cut(s) 245, 1035
BseNI ACTGG 3 cut(s) 212, 707, 1230
BseXI GCAGC 2 cut(s) 299, 1248
BseYI CCCAGC 2 cut(s) 449, 758
Bsh1236I CGCG 1 cut(s) 331
BshFI GGCC 1 cut(s) 334
BshVI ATCGAT 1 cut(s) 847
BsiHKCI CYCGRG 1 cut(s) 245
BsiSI CCGG 2 cut(s) 523, 860
BslFI GGGAC 1 cut(s) 1167
BsmFI GGGAC 1 cut(s) 1167
BsmI GAATGC 3 cut(s) 200, 614, 920
BsnI GGCC 1 cut(s) 334
BsoBI CYCGRG 1 cut(s) 245
Bsp1407I TGTACA 1 cut(s) 104
Bsp143I GATC 3 cut(s) 735, 1173, 1191
BspACI CCGC 5 cut(s) 58, 117, 331, 338, 782
BspANI GGCC 1 cut(s) 334
BspCNI CTCAG 2 cut(s) 246, 1034
BspDI ATCGAT 1 cut(s) 847
BspFNI CGCG 1 cut(s) 331
BspLI GGNNCC 1 cut(s) 1214
BspMI ACCTGC 1 cut(s) 1049
BspPI GGATC 2 cut(s) 1181, 1199
BspTI CTTAAG 1 cut(s) 709
BsrGI TGTACA 1 cut(s) 104
BsrI ACTGG 3 cut(s) 212, 707, 1230
BssMI GATC 3 cut(s) 735, 1173, 1191
BssNI GRCGYC 2 cut(s) 235, 681
Bst2UI CCWGG 1 cut(s) 620
Bst4CI ACNGT 6 cut(s) 386, 445, 518, 633, 1000, 1066
Bst6I CTCTTC 1 cut(s) 378
BstACI GRCGYC 2 cut(s) 235, 681
BstAFI CTTAAG 1 cut(s) 709
BstAUI TGTACA 1 cut(s) 104
BstC8I GCNNGC 3 cut(s) 336, 782, 865
BstDEI CTNAG 2 cut(s) 254, 1021
BstF5I GGATG 2 cut(s) 129, 820
BstFNI CGCG 1 cut(s) 331
BstKTI GATC 3 cut(s) 738, 1176, 1194
BstMBI GATC 3 cut(s) 735, 1173, 1191
BstMWI GCNNNNNNNGC 2 cut(s) 16, 331
BstNI CCWGG 1 cut(s) 620
BstNSI RCATGY 2 cut(s) 804, 1017
BstSCI CCNGG 1 cut(s) 618
BstSFI CTRYAG 1 cut(s) 1078
BstUI CGCG 1 cut(s) 331
BstV1I GCAGC 2 cut(s) 299, 1248
Bsu15I ATCGAT 1 cut(s) 847
BsuRI GGCC 1 cut(s) 334
BsuTUI ATCGAT 1 cut(s) 847
BtsCI GGATG 2 cut(s) 129, 820
BtsI GCAGTG 1 cut(s) 52
BtsIMutI CAGTG 4 cut(s) 52, 441, 638, 996
BveI ACCTGC 1 cut(s) 1049
Cac8I GCNNGC 3 cut(s) 336, 782, 865
Cfr13I GGNCC 1 cut(s) 152
ClaI ATCGAT 1 cut(s) 847
CseI GACGC 2 cut(s) 224, 547
Csp6I GTAC 5 cut(s) 105, 184, 367, 456, 1089
CviAII CATG 5 cut(s) 785, 801, 840, 966, 1014
CviQI GTAC 5 cut(s) 105, 184, 367, 456, 1089
DdeI CTNAG 2 cut(s) 254, 1021
DpnI GATC 3 cut(s) 737, 1175, 1193
DpnII GATC 3 cut(s) 735, 1173, 1191
DraI TTTAAA 1 cut(s) 1147
DriI GACNNNNNGTC 1 cut(s) 1160
EaeI YGGCCR 1 cut(s) 332
Eam1104I CTCTTC 1 cut(s) 378
Eam1105I GACNNNNNGTC 1 cut(s) 1160
EarI CTCTTC 1 cut(s) 378
Eco32I GATATC 1 cut(s) 544
Eco47I GGWCC 1 cut(s) 152
Eco57I CTGAAG 1 cut(s) 266
Eco88I CYCGRG 1 cut(s) 245
EcoRII CCWGG 1 cut(s) 618
EcoRV GATATC 1 cut(s) 544
EcoT22I ATGCAT 1 cut(s) 616
FaeI CATG 5 cut(s) 788, 804, 843, 969, 1017
FalI AAGNNNNNCTT 2 cut(s) 212, 244
FaqI GGGAC 1 cut(s) 1167
FatI CATG 5 cut(s) 784, 800, 839, 965, 1013
FauI CCCGC 1 cut(s) 789
FauNDI CATATG 1 cut(s) 21
FbaI TGATCA 1 cut(s) 735
FblI GTMKAC 1 cut(s) 238
Fnu4HI GCNGC 5 cut(s) 58, 313, 332, 339, 1237
FokI GGATG 2 cut(s) 116, 827
Fsp4HI GCNGC 5 cut(s) 58, 313, 332, 339, 1237
FspBI CTAG 2 cut(s) 11, 716
GluI GCNGC 5 cut(s) 58, 313, 332, 339, 1237
GsaI CCCAGC 2 cut(s) 453, 762
GsuI CTGGAG 1 cut(s) 724
HaeIII GGCC 1 cut(s) 334
HapII CCGG 2 cut(s) 523, 860
HgaI GACGC 2 cut(s) 224, 547
Hin1I GRCGYC 2 cut(s) 235, 681
Hin1II CATG 5 cut(s) 788, 804, 843, 969, 1017
HincII GTYRAC 3 cut(s) 127, 462, 625
HindII GTYRAC 3 cut(s) 127, 462, 625
HinfI GANTC 3 cut(s) 940, 1155, 1183
HpaI GTTAAC 1 cut(s) 127
HpaII CCGG 2 cut(s) 523, 860
HphI GGTGA 1 cut(s) 69
Hpy166II GTNNAC 5 cut(s) 127, 239, 456, 462, 625
Hpy188I TCNGA 3 cut(s) 348, 655, 1024
Hpy188III TCNNGA 7 cut(s) 229, 485, 902, 944, 1152, 1180, 1210
Hpy8I GTNNAC 5 cut(s) 127, 239, 456, 462, 625
Hpy99I CGWCG 1 cut(s) 686
HpyAV CCTTC 3 cut(s) 88, 866, 896
HpyCH4III ACNGT 6 cut(s) 386, 445, 518, 633, 1000, 1066
HpyCH4IV ACGT 3 cut(s) 458, 681, 895
HpyF10VI GCNNNNNNNGC 2 cut(s) 16, 331
HpyF3I CTNAG 2 cut(s) 254, 1021
HpySE526I ACGT 3 cut(s) 458, 681, 895
Hsp92I GRCGYC 2 cut(s) 235, 681
Hsp92II CATG 5 cut(s) 788, 804, 843, 969, 1017
Ksp22I TGATCA 1 cut(s) 735
KspAI GTTAAC 1 cut(s) 127
Kzo9I GATC 3 cut(s) 735, 1173, 1191
LmnI GCTCC 1 cut(s) 705
Lsp1109I GCAGC 2 cut(s) 299, 1248
LweI GCATC 3 cut(s) 80, 805, 970
MaeI CTAG 2 cut(s) 11, 716
MaeII ACGT 3 cut(s) 458, 681, 895
MaeIII GTNAC 5 cut(s) 167, 286, 404, 989, 1123
MalI GATC 3 cut(s) 737, 1175, 1193
MboI GATC 3 cut(s) 735, 1173, 1191
MboII GAAGA 4 cut(s) 97, 365, 597, 1095
MfeI CAATTG 1 cut(s) 5
MluCI AATT 7 cut(s) 5, 100, 378, 480, 550, 743, 1166
MlyI GAGTC 2 cut(s) 949, 1149
MmeI TCCRAC 1 cut(s) 916
MnlI CCTC 8 cut(s) 105, 113, 225, 241, 427, 598, 1104, 1164
Mph1103I ATGCAT 1 cut(s) 616
MroXI GAANNNNTTC 1 cut(s) 224
MseI TTAA 6 cut(s) 126, 381, 513, 710, 975, 1146
MslI CAYNNNNRTG 2 cut(s) 112, 799
MspA1I CMGCKG 1 cut(s) 338
MspCI CTTAAG 1 cut(s) 709
MspI CCGG 2 cut(s) 523, 860
MspR9I CCNGG 1 cut(s) 620
MunI CAATTG 1 cut(s) 5
Mva1269I GAATGC 3 cut(s) 200, 614, 920
MvaI CCWGG 1 cut(s) 620
MvnI CGCG 1 cut(s) 331
MwoI GCNNNNNNNGC 2 cut(s) 16, 331
NdeI CATATG 1 cut(s) 21
NdeII GATC 3 cut(s) 735, 1173, 1191
NlaIII CATG 5 cut(s) 788, 804, 843, 969, 1017
NlaIV GGNNCC 1 cut(s) 1214
NmuCI GTSAC 2 cut(s) 404, 1123
NsiI ATGCAT 1 cut(s) 616
NspI RCATGY 2 cut(s) 804, 1017
PaeR7I CTCGAG 1 cut(s) 245
PcsI WCGNNNNNNNCGW 1 cut(s) 183
PctI GAATGC 3 cut(s) 200, 614, 920
PdmI GAANNNNTTC 1 cut(s) 224
PfeI GAWTC 1 cut(s) 1183
PkrI GCNGC 5 cut(s) 59, 314, 333, 340, 1238
PleI GAGTC 2 cut(s) 948, 1149
PpsI GAGTC 2 cut(s) 948, 1149
Psp1406I AACGTT 1 cut(s) 895
Psp6I CCWGG 1 cut(s) 618
PspFI CCCAGC 2 cut(s) 449, 758
PspGI CCWGG 1 cut(s) 618
PspN4I GGNNCC 1 cut(s) 1214
PspPI GGNCC 1 cut(s) 152
PspXI VCTCGAGB 1 cut(s) 245
RsaI GTAC 5 cut(s) 106, 185, 368, 457, 1090
RsaNI GTAC 5 cut(s) 105, 184, 367, 456, 1089
RseI CAYNNNNRTG 2 cut(s) 112, 799
SaqAI TTAA 6 cut(s) 126, 381, 513, 710, 975, 1146
SatI GCNGC 5 cut(s) 58, 313, 332, 339, 1237
Sau3AI GATC 3 cut(s) 735, 1173, 1191
Sau96I GGNCC 1 cut(s) 152
SchI GAGTC 2 cut(s) 949, 1149
ScrFI CCNGG 1 cut(s) 620
SfaNI GCATC 3 cut(s) 80, 805, 970
SfcI CTRYAG 1 cut(s) 1078
Sfr274I CTCGAG 1 cut(s) 245
SinI GGWCC 1 cut(s) 152
SlaI CTCGAG 1 cut(s) 245
SmiMI CAYNNNNRTG 2 cut(s) 112, 799
SmlI CTYRAG 4 cut(s) 229, 245, 709, 1106
SmoI CTYRAG 4 cut(s) 229, 245, 709, 1106
Sse9I AATT 7 cut(s) 5, 100, 378, 480, 550, 743, 1166
SsiI CCGC 5 cut(s) 58, 117, 331, 338, 782
SspI AATATT 2 cut(s) 955, 973
SspMI CTAG 2 cut(s) 11, 716
StyD4I CCNGG 1 cut(s) 618
TaaI ACNGT 6 cut(s) 386, 445, 518, 633, 1000, 1066
TaiI ACGT 3 cut(s) 461, 684, 898
TaqI TCGA 5 cut(s) 110, 246, 486, 764, 847
TaqII GACCGA 1 cut(s) 1150
TasI AATT 7 cut(s) 5, 100, 378, 480, 550, 743, 1166
TatI WGTACW 2 cut(s) 104, 366
TauI GCSGC 3 cut(s) 60, 334, 341
TfiI GAWTC 1 cut(s) 1183
Tru1I TTAA 6 cut(s) 126, 381, 513, 710, 975, 1146
Tru9I TTAA 6 cut(s) 126, 381, 513, 710, 975, 1146
TscAI CASTG 4 cut(s) 59, 448, 638, 1003
TseFI GTSAC 2 cut(s) 404, 1123
TseI GCWGC 2 cut(s) 312, 1236
Tsp45I GTSAC 2 cut(s) 404, 1123
TspDTI ATGAA 3 cut(s) 22, 591, 927
TspGWI ACGGA 3 cut(s) 813, 921, 1238
TspRI CASTG 4 cut(s) 59, 448, 638, 1003
Vha464I CTTAAG 1 cut(s) 709
VpaK11BI GGWCC 1 cut(s) 152
XceI RCATGY 2 cut(s) 804, 1017
XhoI CTCGAG 1 cut(s) 245
XmiI GTMKAC 1 cut(s) 238
XmnI GAANNNNTTC 1 cut(s) 224
XspI CTAG 2 cut(s) 11, 716
ZraI GACGTC 1 cut(s) 682
Zsp2I ATGCAT 1 cut(s) 616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.