FvH4_6g38990

wall-associated receptor kinase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000052
Physical Location & Seq
Reverse (-)
30824681 .. 30831762
7082 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g38990.t1

Sequence Viewer

Length: 2271 bp
ATGGCTGCCCAGTTGCTATTTCATATTACTTTGTTACTATGGTCTATGAGTAGTACTGAAGTACTAGTAGCATCAGAAGCATCAGAAGCACTACCCATAGCAAAGCCTAATTGTCCATCGCATTGCGGAGACATTGAAATCCCATACCCTTTTGGGATAGGAGCAGGTTGTTACATCAATGATGACTGGTTCCGAGTGTTCTGTGACAACTCTACTGGCTCTCCTAGACCTTACTTGAACGGCACCAATCTGGAGGTACTAAATATTTCTGTTGTTGAAGGCACACTAAGGGTCAGAAACCCAATCACCTTCTCTAATTGCAGCGGTAAGCCAAATCGTCAAGCAGTCAACTTGGAGGGAAGCCCTTTTACGTTCTTCTCCCAGAAGAACATGTTCACTGCAGTAGGTTGCGGAGTTATGGCCACAATCACCTCAAACTCAAATGGCGTTACCATTTCAGCTGGGTGCAGGTCCGAATGTTATGCTTCTGTTGATAGTACAAATAGTAGTACCAGCCCTAATACCTGCAATGGTGTGGATTGCTGCCAGACCGTCATCCCTTCTTCTCTCTGTGCCTTCAATACTAGTTTCCAGCAGGCTAATGATAATCTCACAAAAAGTTCATGCAGTTATGCATTTTTGGTTGATCGTGATTGGTTCGAGTCCTTTGCCAAAAGTTCAACAAATATTTCTGCCACCGGTGATATGGACCAAGTCCCCATTGTGCTACGATGGAACTTATACCATTCAACAACTGATGTTTTTGGGACCTTTATAGCAGAAAATGTAACGAGAGACTATTATGATGTCCTAGATGGTTATTGCGAGAGTTACAGTGACAGCTCTTCACTATATGGATCCTCAAGGCTTGAATGTTTCTGTAGATGGGGCTCTGAGGGAAATCCATATCTTCTTCAAGGATGCAGAGATATCAATGAATGTGAGGATCCAGTAAATAGAGCTAGCTGTTCTCCAGGCGTATGTGTCAATAGTCTTCCAGGTGATAGTGGATGGGGATGCCACTACCCAGAAACCATGATCAGCAAGTCGCGGGTTAAAGCAATCTTTATAGGTATTGGCAGTGGTCTTGGATTCTTAGTTCTACTATTTTGTGCATGGTGGTTGATCAAACTGTGGAAGAAAAGGAAAAACATCAGACTCAAGAAGGAGTTCTTTAAACAAAATGGGGGACTATTATTAGAGCAGCAACTATCTTCCGGTGAAGTTAATGTTGAGAAAATTAAGCTGTTCAATGTAAAGGAACTAGAAAAAGCCACAGATCGTTTTAATGTAGATAGAATACTTGGCCAAGGAGGCCAAGGTACCGTTTACAAAGGAATGTTGGCAGATGGAAGAATTGTTGCAGTAAAGAAGTCTAAAATAGTTGATGGAGGCGAAGTGGGACAGTTCATTAACGAAATTGTCATTCTTTCACAAATTAACCACAGGAATGTGGTTAAGCTATTGGGTTGTTGTTTGGAGACCGAAGTTCCTCTTTTGGTTTATGAATTCATTCCTAAAGGAACTATCTACCAGTATCTCCATGAACAGAATGAAGAGTTTCCACTTACATGGGAAATGCGCTTAAGGATTTCTGCAGAAGTTGCCGGAGCTCTTTCATACTTACACTCGGCTGCTGGTTTTCCAATTTACCACCGCGATATCAAGACTACTAACATACTATTAGATGATAAATACAGAGCAAAAGTTGCAGATTTTGGGACTTCAAGATCAGTTTCCATAGACCAAACACACCTAACCACATTTGTACATGGTACATTTGGTTACTTGGATCCAGAATACTTCCAGTCAAGTCAATTTACAGACAAAAGTGATGTGTATAGCTTTGGGGTGGTACTTGTTGAGCTCCTGACTGGAGAAAAGCCAGTTTCTTTGACCAGGTCACAAGAAGCCAGAGGCCTTGTTTCATATTTCAATCTCTCAGTGGAGGAGAATAATTTGTTTGATATTATTGATGCTCGAGTTAAGGTGGATGGTGTAACAGAAGATATTTTGGTAGTCGCTAATCTTGCAAAAAGATGTCTGGATATGAATGGGAAGAGACGACCTACCATGAAAGAAGTTGCAATGGAGTTGGAGGTGATTCATAAATCAGTAATATCTTCAAATACACAACAAAATCATGAAGAAGTTGAGTATGTCCGAAATGAAGTAACTTGTCCTTGGGATGTTGCTACTACTGTAACCGGGTCAGCTTTGGATGGTGGCACTGCCTCATCAATTGAGTCACTACCACTAATGTCTAGCTAA

Protein Analysis

757

Amino Acids

83.56

Weight (kDa)

5.24

Isoelectric Point (pI)

40.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 38 - 99 1.6e-11 Wall-associated receptor kinase galacturonan-binding
Pkinase PF00069 429 - 695 2.4e-46 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 431 - 699 2.3e-46 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000052)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16090 AT1G16110 AT1G16120 AT1G16130 AT1G16150 AT1G16160 AT1G16260 AT1G16260 AT1G16260 AT1G79670 AT1G79670
fragaria_vesca FvH4_1g22960 FvH4_3g09860 FvH4_3g10284 FvH4_3g10284 FvH4_3g10540 FvH4_3g24040 FvH4_3g35290 FvH4_3g35290 FvH4_5g06860 FvH4_5g06940 FvH4_6g15920 FvH4_6g15920 FvH4_6g37660 FvH4_6g37670 FvH4_6g37691 FvH4_6g37700 FvH4_6g37710 FvH4_6g38990 FvH4_6g39000 FvH4_6g39020 FvH4_6g39020 FvH4_6g39020 FvH4_6g39021 FvH4_6g39030 FvH4_6g39030 FvH4_6g39031 FvH4_6g39032 FvH4_6g45200 FvH4_6g45200
malus_domestica MD08G1107900.v1.1 MD09G1145100.v1.1 MD09G1145200.v1.1 MD09G1145300.v1.1 MD09G1145400.v1.1 MD09G1145500.v1.1 MD17G1131600.v1.1 MD17G1131700.v1.1 MD17G1131900.v1.1 MD17G1132000.v1.1
prunus_persica Prupe.1G188400_v2.0.a1 Prupe.1G188700_v2.0.a1 Prupe.3G180500_v2.0.a1 Prupe.3G180600_v2.0.a1 Prupe.3G180700_v2.0.a1 Prupe.3G181000_v2.0.a1 Prupe.3G181100_v2.0.a1 Prupe.3G181100_v2.0.a1 Prupe.3G181200_v2.0.a1 Prupe.3G181200_v2.0.a1 Prupe.3G181400_v2.0.a1 Prupe.3G181500_v2.0.a1 Prupe.3G181600_v2.0.a1 Prupe.3G181800_v2.0.a1 Prupe.3G181900_v2.0.a1 Prupe.3G182000_v2.0.a1 Prupe.3G182100_v2.0.a1 Prupe.3G182200_v2.0.a1 Prupe.3G182300_v2.0.a1 Prupe.3G182400_v2.0.a1 Prupe.3G182500_v2.0.a1 Prupe.3G182600_v2.0.a1 Prupe.3G182700_v2.0.a1 Prupe.5G051200_v2.0.a1 Prupe.5G051300_v2.0.a1 Prupe.5G051400_v2.0.a1 Prupe.5G051500_v2.0.a1 Prupe.5G051600_v2.0.a1 Prupe.5G051600_v2.0.a1 Prupe.5G051800_v2.0.a1
pyrus_communis pycom09g06470 pycom09g06490 pycom09g06510 pycom09g06520 pycom09g06570 pycom09g06580 pycom17g12440 pycom17g12450 pycom17g12530
rosa_chinensis RchiOBHm_Chr2g0117481 RchiOBHm_Chr2g0128321 RchiOBHm_Chr2g0128331 RchiOBHm_Chr2g0128581 RchiOBHm_Chr2g0128591 RchiOBHm_Chr2g0150651 RchiOBHm_Chr2g0150661 RchiOBHm_Chr2g0150741 RchiOBHm_Chr2g0150781 RchiOBHm_Chr2g0152581 RchiOBHm_Chr2g0152591 RchiOBHm_Chr2g0152641 RchiOBHm_Chr2g0152661 RchiOBHm_Chr2g0152711 RchiOBHm_Chr2g0152731 RchiOBHm_Chr2g0152871 RchiOBHm_Chr2g0152881 RchiOBHm_Chr2g0152901 RchiOBHm_Chr2g0152921 RchiOBHm_Chr2g0152931 RchiOBHm_Chr2g0152941 RchiOBHm_Chr3g0469621 RchiOBHm_Chr3g0469631 RchiOBHm_Chr5g0015591 RchiOBHm_Chr5g0046061 RchiOBHm_Chr5g0047341 RchiOBHm_Chr5g0063341 RchiOBHm_Chr5g0063351 RchiOBHm_Chr6g0264381 RchiOBHm_Chr7g0191741 RchiOBHm_Chr7g0210751 RchiOBHm_Chr7g0221871 RchiOBHm_Chr7g0225671 RchiOBHm_Chr7g0225891 RchiOBHm_Chr7g0225901 RchiOBHm_Chr7g0225961 RchiOBHm_Chr7g0225971 RchiOBHm_Chr7g0234031 RchiOBHm_Chr7g0234041
rosa_laevigata RLG00000001780 RLG00000001784 RLG00000001785 RLG00000001788 RLG00000001789 RLG00000001793 RLG00000001794 RLG00000002941 RLG00000004430 RLG00000014259 RLG00000018349 RLG00000019001 RLG00000019005 RLG00000019011 RLG00000020503 RLG00000020507 RLG00000020648 RLG00000020649 RLG00000020651 RLG00000020652 RLG00000020653 RLG00000020655 RLG00000020656 RLG00000020657 RLG00000023668 RLG00000024331 RLG00000034386 RLG00000035624 RLG00000035625
rosa_multiflora Rmu_co8401977.1_g000001 Rmu_co8409989.1_g000001 Rmu_co8432067.1_g000001 Rmu_co8491011.1_g000001 Rmu_sc0000580.1_g000085 Rmu_sc0000740.1_g000012 Rmu_sc0000740.1_g000014 Rmu_sc0000837.1_g000041 Rmu_sc0000837.1_g000077 Rmu_sc0001552.1_g000008 Rmu_sc0001617.1_g000001 Rmu_sc0002082.1_g000006 Rmu_sc0002082.1_g000007 Rmu_sc0002082.1_g000022 Rmu_sc0002989.1_g000013 Rmu_sc0003064.1_g000011 Rmu_sc0003127.1_g000003 Rmu_sc0003127.1_g000014 Rmu_sc0003127.1_g000028 Rmu_sc0003127.1_g000032 Rmu_sc0003127.1_g000034 Rmu_sc0003127.1_g000035 Rmu_sc0003127.1_g000054 Rmu_sc0003127.1_g000055 Rmu_sc0003465.1_g000034 Rmu_sc0005223.1_g000021 Rmu_sc0005302.1_g000004 Rmu_sc0005378.1_g000005 Rmu_sc0005378.1_g000007 Rmu_sc0005378.1_g000017 Rmu_sc0005378.1_g000034 Rmu_sc0005378.1_g000039 Rmu_sc0005378.1_g000042 Rmu_sc0005378.1_g000056 Rmu_sc0005378.1_g000057 Rmu_sc0005378.1_g000058 Rmu_sc0006483.1_g000013 Rmu_sc0008775.1_g000006 Rmu_sc0008775.1_g000011 Rmu_sc0009104.1_g000010 Rmu_sc0009104.1_g000011 Rmu_sc0009104.1_g000020 Rmu_sc0010960.1_g000006 Rmu_sc0011737.1_g000002 Rmu_sc0011737.1_g000004 Rmu_sc0012875.1_g000003 Rmu_sc0013122.1_g000002 Rmu_sc0018944.1_g000002 Rmu_sc0020155.1_g000001 Rmu_sc0020156.1_g000001 Rmu_ssc0000233.1_g000012 Rmu_ssc0000233.1_g000013 Rmu_ssc0000233.1_g000030 Rmu_ssc0000233.1_g000044 Rmu_ssc0000233.1_g000047 Rmu_ssc0000233.1_g000052 Rmu_ssc0000233.1_g000054 Rmu_ssc0000233.1_g000055 Rmu_ssc0000233.1_g000080 Rmu_ssc0000233.1_g000082 Rmu_ssc0000233.1_g000087 Rmu_ssc0000233.1_g000094 Rmu_ssc0000480.1_g000060 Rmu_ssc0000480.1_g000061
rosa_roxburghii Rroxscaffold_1G00017360 Rroxscaffold_1G00017370 Rroxscaffold_1G00060880 Rroxscaffold_2G00095370 Rroxscaffold_2G00095420 Rroxscaffold_2G00095450 Rroxscaffold_2G00095460 Rroxscaffold_2G00095490 Rroxscaffold_2G00095560 Rroxscaffold_2G00095570 Rroxscaffold_2G00096960 Rroxscaffold_2G00097010 Rroxscaffold_2G00126500 Rroxscaffold_3G00233390 Rroxscaffold_3G00233580 Rroxscaffold_3G00263590 Rroxscaffold_6G00411660
rosa_rugosa Rorug01G0142700.1 Rorug01G0148600.1 Rorug02G0212800 Rorug02G0422400 Rorug02G0434700 Rorug02G0434800 Rorug02G0435000 Rorug02G0435200 Rorug02G0435300 Rorug02G0435400 Rorug02G0435700 Rorug02G0435800 Rorug02G0436200 Rorug02G0436300 Rorug03G0102800 Rorug04G0123600 Rorug04G0123700 Rorug04G0123800 Rorug04G0124000 Rorug04G0124000 Rorug04G0124500 Rorug04G0124700 Rorug04G0124900 Rorug05G0028600.1 Rorug05G0356100 Rorug05G0356800 Rorug06G0011900 Rorug07G0092900 Rorug07G0122800 Rorug07G0232500 Rorug07G0232600 Rorug07G0232700
rosa_samantha Rh1AG408900 Rh2AG332700 Rh2AG333400 Rh2AG482100 Rh2AG482200 Rh2AG482500 Rh2AG496000 Rh2AG496100 Rh2AG496200 Rh2AG496300 Rh2AG497100 Rh2AG497200 Rh2AG497400 Rh2BG280300 Rh2BG340500 Rh2BG494400 Rh2BG494900 Rh2BG507800 Rh2BG507900 Rh2BG508000 Rh2BG508100 Rh2BG508300 Rh2BG508500 Rh2BG508700 Rh2BG509200 Rh2BG512700 Rh2CG271900 Rh2CG319100 Rh2CG319400 Rh2CG357200 Rh2CG468400 Rh2CG468500 Rh2CG468800 Rh2CG482200 Rh2CG482300 Rh2CG482400 Rh2CG482500 Rh2CG483200 Rh2CG483300 Rh2CG483500 Rh2CG483600 Rh2DG294600 Rh2DG357100 Rh2DG357700 Rh2DG503400 Rh2DG504300 Rh2DG504900 Rh2DG505500 Rh2DG505900 Rh2DG519000 Rh2DG519100 Rh2DG519300 Rh2DG519400 Rh2DG520000 Rh2DG520200 Rh2DG520500 Rh2DG521000 Rh2DG524300 Rh3AG152400 Rh3AG334400 Rh3BG176100 Rh3CG167200 Rh3DG199400 Rh3DG199500 Rh5AG415900 Rh5BG430800 Rh5CG454300 Rh5DG444600 Rh6AG247500 Rh6AG247700 Rh7AG120600 Rh7AG369800 Rh7AG370800 Rh7AG468300 Rh7BG366400 Rh7CG125200 Rh7CG388700 Rh7CG389400 Rh7CG459600 Rh7DG123300 Rh7DG123400 Rh7DG123800 Rh7DG123900 Rh7DG377200
rosa_wichuraiana Rw0G004850 Rw0G004870 Rw0G013120 Rw1G013520 Rw2G026850 Rw2G026910 Rw2G027120 Rw2G039340 Rw2G039360 Rw2G039410 Rw2G039420 Rw2G039440 Rw2G039520 Rw2G040810 Rw2G040830 Rw2G040850 Rw2G040860 Rw2G040880 Rw2G041210 Rw2G041220 Rw2G041240 Rw2G041250 Rw3G014370 Rw5G010520 Rw5G039070 Rw6G021410 Rw6G021420 Rw7G010280 Rw7G021780 Rw7G031820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 155, 459, 533
Acc65I GGTACC 1 cut(s) 1322
AccB1I GGYRCC 2 cut(s) 242, 1322
AccII CGCG 2 cut(s) 1051, 1659
AciI CCGC 5 cut(s) 126, 324, 411, 1051, 1657
AclWI GGATC 6 cut(s) 852, 865, 941, 954, 1787, 1800
AcoI YGGCCR 2 cut(s) 420, 1306
AcsI RAATTY 1 cut(s) 1508
AcuI CTGAAG 1 cut(s) 78
AfaI GTAC 9 cut(s) 55, 63, 258, 499, 511, 1324, 1770, 1777, 1857
AflII CTTAAG 1 cut(s) 1585
AflIII ACRYGT 1 cut(s) 390
AgeI ACCGGT 1 cut(s) 698
AhlI ACTAGT 2 cut(s) 64, 584
AjnI CCWGG 3 cut(s) 973, 997, 1898
AloI GAACNNNNNNTCC 2 cut(s) 1083, 1115
Alw21I GWGCWC 2 cut(s) 1615, 1869
Alw26I GTCTC 4 cut(s) 123, 789, 1475, 2056
AlwI GGATC 6 cut(s) 852, 865, 941, 954, 1787, 1800
Ama87I CYCGRG 1 cut(s) 1980
AoxI GGCC 4 cut(s) 420, 1306, 1315, 1918
ApeKI GCWGC 5 cut(s) 5, 321, 543, 1204, 1634
ApoI RAATTY 1 cut(s) 1508
AsiGI ACCGGT 1 cut(s) 698
Asp700I GAANNNNTTC 4 cut(s) 392, 1169, 1512, 1560
Asp718I GGTACC 1 cut(s) 1322
AspLEI GCGC 1 cut(s) 1584
AspS9I GGNCC 3 cut(s) 471, 709, 768
AsuC2I CCSGG 1 cut(s) 2209
AsuHPI GGTGA 6 cut(s) 298, 421, 713, 1013, 1232, 2113
AsuNHI GCTAGC 1 cut(s) 962
AvaI CYCGRG 1 cut(s) 1980
AvaII GGWCC 3 cut(s) 471, 709, 768
BalI TGGCCA 2 cut(s) 422, 1308
BamHI GGATCC 3 cut(s) 857, 946, 1792
BanI GGYRCC 2 cut(s) 242, 1322
BanII GRGCYC 3 cut(s) 893, 1615, 1869
BarI GAAGNNNNNNTAC 2 cut(s) 352, 384
BbsI GAAGAC 1 cut(s) 986
Bbv12I GWGCWC 2 cut(s) 1615, 1869
BbvI GCAGC 4 cut(s) 333, 530, 1216, 1621
BccI CCATC 9 cut(s) 124, 726, 809, 879, 1005, 1343, 1382, 1988, 2216
BceAI ACGGC 1 cut(s) 256
BcgI CGANNNNNNTGC 4 cut(s) 464, 498, 650, 684
BciT130I CCWGG 3 cut(s) 975, 999, 1900
BclI TGATCA 2 cut(s) 1038, 1125
BcnI CCSGG 1 cut(s) 2209
BcoDI GTCTC 4 cut(s) 123, 789, 1475, 2056
BcuI ACTAGT 2 cut(s) 64, 584
BfaI CTAG 7 cut(s) 65, 225, 585, 812, 963, 1265, 2265
BfmI CTRYAG 3 cut(s) 399, 880, 1596
BfrI CTTAAG 1 cut(s) 1585
BfuAI ACCTGC 3 cut(s) 155, 459, 533
BglI GCCNNNNNGGC 1 cut(s) 1314
BisI GCNGC 5 cut(s) 6, 322, 544, 1205, 1635
BlsI GCNGC 5 cut(s) 7, 323, 545, 1206, 1636
BmcAI AGTACT 2 cut(s) 55, 63
Bme1390I CCNGG 4 cut(s) 975, 999, 1900, 2209
Bme18I GGWCC 3 cut(s) 471, 709, 768
BmeT110I CYCGRG 1 cut(s) 1980
BmgT120I GGNCC 3 cut(s) 471, 709, 768
BmiI GGNNCC 7 cut(s) 191, 244, 769, 859, 948, 1324, 1794
BmrFI CCNGG 4 cut(s) 975, 999, 1900, 2209
BmrI ACTGGG 1 cut(s) 4
BmsI GCATC 5 cut(s) 80, 89, 911, 1007, 1966
BmtI GCTAGC 1 cut(s) 966
BmuI ACTGGG 1 cut(s) 4
BpiI GAAGAC 1 cut(s) 986
BpmI CTGGAG 3 cut(s) 272, 957, 1896
BpuEI CTTGAG 2 cut(s) 847, 1145
BpuMI CCSGG 1 cut(s) 2209
BsaI GGTCTC 1 cut(s) 1475
BsaJI CCNNGG 3 cut(s) 1309, 1318, 2183
BsaWI WCCGGW 2 cut(s) 698, 1217
BsaXI ACNNNNNCTCC 4 cut(s) 205, 235, 1383, 1413
Bse118I RCCGGY 1 cut(s) 698
Bse1I ACTGG 8 cut(s) 10, 191, 220, 950, 1534, 1807, 1879, 1886
Bse3DI GCAATG 3 cut(s) 121, 535, 2094
BseBI CCWGG 3 cut(s) 975, 999, 1900
BseDI CCNNGG 3 cut(s) 1309, 1318, 2183
BseGI GGATG 7 cut(s) 555, 926, 1016, 1022, 1999, 2194, 2227
BseMI GCAATG 3 cut(s) 121, 535, 2094
BseMII CTCAG 2 cut(s) 885, 1956
BseNI ACTGG 8 cut(s) 10, 191, 220, 950, 1534, 1807, 1879, 1886
BseRI GAGGAG 1 cut(s) 1964
BseXI GCAGC 4 cut(s) 333, 530, 1216, 1621
BseYI CCCAGC 1 cut(s) 461
BsgI GTGCAG 1 cut(s) 487
Bsh1236I CGCG 2 cut(s) 1051, 1659
BshFI GGCC 4 cut(s) 422, 1308, 1317, 1920
BshNI GGYRCC 2 cut(s) 242, 1322
BshTI ACCGGT 1 cut(s) 698
BsiHKAI GWGCWC 2 cut(s) 1615, 1869
BsiHKCI CYCGRG 1 cut(s) 1980
BsiSI CCGG 4 cut(s) 699, 1218, 1608, 2208
BslFI GGGAC 5 cut(s) 701, 781, 1203, 1416, 1735
BsmAI GTCTC 4 cut(s) 123, 789, 1475, 2056
BsmBI CGTCTC 1 cut(s) 2056
BsmFI GGGAC 5 cut(s) 701, 781, 1203, 1416, 1735
BsnI GGCC 4 cut(s) 422, 1308, 1317, 1920
Bso31I GGTCTC 1 cut(s) 1475
BsoBI CYCGRG 1 cut(s) 1980
Bsp1286I GDGCHC 3 cut(s) 893, 1615, 1869
Bsp1407I TGTACA 1 cut(s) 1768
Bsp143I GATC 8 cut(s) 646, 857, 946, 1038, 1125, 1279, 1730, 1792
BspACI CCGC 5 cut(s) 126, 324, 411, 1051, 1657
BspANI GGCC 4 cut(s) 422, 1308, 1317, 1920
BspCNI CTCAG 2 cut(s) 886, 1955
BspFNI CGCG 2 cut(s) 1051, 1659
BspHI TCATGA 1 cut(s) 2143
BspLI GGNNCC 7 cut(s) 191, 244, 769, 859, 948, 1324, 1794
BspMAI CTGCAG 2 cut(s) 403, 1600
BspMI ACCTGC 3 cut(s) 155, 459, 533
BspOI GCTAGC 1 cut(s) 966
BspPI GGATC 6 cut(s) 852, 865, 941, 954, 1787, 1800
BspQI GCTCTTC 1 cut(s) 850
BspT107I GGYRCC 2 cut(s) 242, 1322
BspTI CTTAAG 1 cut(s) 1585
BspTNI GGTCTC 1 cut(s) 1475
BsrDI GCAATG 3 cut(s) 121, 535, 2094
BsrFI RCCGGY 1 cut(s) 698
BsrGI TGTACA 1 cut(s) 1768
BsrI ACTGG 8 cut(s) 10, 191, 220, 950, 1534, 1807, 1879, 1886
BssAI RCCGGY 1 cut(s) 698
BssECI CCNNGG 3 cut(s) 1309, 1318, 2183
BssMI GATC 8 cut(s) 646, 857, 946, 1038, 1125, 1279, 1730, 1792
BssT1I CCWWGG 3 cut(s) 1309, 1318, 2183
Bst2UI CCWGG 3 cut(s) 975, 999, 1900
Bst4CI ACNGT 6 cut(s) 553, 836, 1134, 1327, 1407, 2203
Bst6I CTCTTC 3 cut(s) 850, 1551, 2054
BstAFI CTTAAG 1 cut(s) 1585
BstAPI GCANNNNNTGC 2 cut(s) 1604, 1709
BstAUI TGTACA 1 cut(s) 1768
BstC8I GCNNGC 2 cut(s) 597, 964
BstDEI CTNAG 4 cut(s) 287, 894, 1096, 1942
BstF5I GGATG 7 cut(s) 555, 926, 1016, 1022, 1999, 2194, 2227
BstFNI CGCG 2 cut(s) 1051, 1659
BstHHI GCGC 1 cut(s) 1584
BstKTI GATC 8 cut(s) 649, 860, 949, 1041, 1128, 1282, 1733, 1795
BstMAI GTCTC 4 cut(s) 123, 789, 1475, 2056
BstMBI GATC 8 cut(s) 646, 857, 946, 1038, 1125, 1279, 1730, 1792
BstMWI GCNNNNNNNGC 6 cut(s) 77, 86, 1314, 1604, 1709, 2030
BstNI CCWGG 3 cut(s) 975, 999, 1900
BstNSI RCATGY 1 cut(s) 394
BstSCI CCNGG 4 cut(s) 973, 997, 1898, 2207
BstSFI CTRYAG 3 cut(s) 399, 880, 1596
BstUI CGCG 2 cut(s) 1051, 1659
BstV1I GCAGC 4 cut(s) 333, 530, 1216, 1621
BstV2I GAAGAC 1 cut(s) 986
BstX2I RGATCY 3 cut(s) 857, 946, 1792
BstXI CCANNNNNNTGG 1 cut(s) 1572
BstYI RGATCY 3 cut(s) 857, 946, 1792
BsuRI GGCC 4 cut(s) 422, 1308, 1317, 1920
BtgZI GCGATG 1 cut(s) 102
BtsCI GGATG 7 cut(s) 555, 926, 1016, 1022, 1999, 2194, 2227
BtsI GCAGTG 3 cut(s) 396, 1087, 2229
BtsIMutI CAGTG 5 cut(s) 396, 841, 1087, 1950, 2229
BveI ACCTGC 3 cut(s) 155, 459, 533
Cac8I GCNNGC 2 cut(s) 597, 964
CciI TCATGA 1 cut(s) 2143
CfoI GCGC 1 cut(s) 1584
Cfr10I RCCGGY 1 cut(s) 698
Cfr13I GGNCC 3 cut(s) 471, 709, 768
CsiI ACCWGGT 1 cut(s) 1898
Csp6I GTAC 9 cut(s) 54, 62, 257, 498, 510, 1323, 1769, 1776, 1856
CspAI ACCGGT 1 cut(s) 698
CviAII CATG 9 cut(s) 391, 624, 1036, 1116, 1544, 1572, 1772, 2074, 2144
CviQI GTAC 9 cut(s) 54, 62, 257, 498, 510, 1323, 1769, 1776, 1856
DdeI CTNAG 4 cut(s) 287, 894, 1096, 1942
DpnI GATC 8 cut(s) 648, 859, 948, 1040, 1127, 1281, 1732, 1794
DpnII GATC 8 cut(s) 646, 857, 946, 1038, 1125, 1279, 1730, 1792
DraI TTTAAA 1 cut(s) 1177
EaeI YGGCCR 2 cut(s) 420, 1306
Eam1104I CTCTTC 3 cut(s) 850, 1551, 2054
EarI CTCTTC 3 cut(s) 850, 1551, 2054
Ecl136II GAGCTC 2 cut(s) 1613, 1867
Eco130I CCWWGG 3 cut(s) 1309, 1318, 2183
Eco147I AGGCCT 1 cut(s) 1920
Eco24I GRGCYC 3 cut(s) 893, 1615, 1869
Eco31I GGTCTC 1 cut(s) 1475
Eco32I GATATC 2 cut(s) 931, 1663
Eco47I GGWCC 3 cut(s) 471, 709, 768
Eco53kI GAGCTC 2 cut(s) 1613, 1867
Eco57I CTGAAG 1 cut(s) 78
Eco88I CYCGRG 1 cut(s) 1980
EcoICRI GAGCTC 2 cut(s) 1613, 1867
EcoO109I RGGNCCY 1 cut(s) 768
EcoRI GAATTC 1 cut(s) 1508
EcoRII CCWGG 3 cut(s) 973, 997, 1898
EcoRV GATATC 2 cut(s) 931, 1663
EcoT14I CCWWGG 3 cut(s) 1309, 1318, 2183
EcoT22I ATGCAT 1 cut(s) 637
EcoT38I GRGCYC 3 cut(s) 893, 1615, 1869
ErhI CCWWGG 3 cut(s) 1309, 1318, 2183
Esp3I CGTCTC 1 cut(s) 2056
FaeI CATG 9 cut(s) 394, 627, 1039, 1119, 1547, 1575, 1775, 2077, 2147
FalI AAGNNNNNCTT 4 cut(s) 1157, 1189, 1479, 1511
FaqI GGGAC 5 cut(s) 701, 781, 1203, 1416, 1735
FatI CATG 9 cut(s) 390, 623, 1035, 1115, 1543, 1571, 1771, 2073, 2143
FauI CCCGC 1 cut(s) 1044
FbaI TGATCA 2 cut(s) 1038, 1125
Fnu4HI GCNGC 5 cut(s) 6, 322, 544, 1205, 1635
FokI GGATG 7 cut(s) 542, 933, 1023, 1029, 2006, 2201, 2234
FriOI GRGCYC 3 cut(s) 893, 1615, 1869
Fsp4HI GCNGC 5 cut(s) 6, 322, 544, 1205, 1635
FspBI CTAG 7 cut(s) 65, 225, 585, 812, 963, 1265, 2265
GlaI GCGC 1 cut(s) 1583
GluI GCNGC 5 cut(s) 6, 322, 544, 1205, 1635
GsaI CCCAGC 1 cut(s) 465
GsuI CTGGAG 3 cut(s) 272, 957, 1896
HaeIII GGCC 4 cut(s) 422, 1308, 1317, 1920
HapII CCGG 4 cut(s) 699, 1218, 1608, 2208
HhaI GCGC 1 cut(s) 1584
Hin1II CATG 9 cut(s) 394, 627, 1039, 1119, 1547, 1575, 1775, 2077, 2147
Hin6I GCGC 1 cut(s) 1582
HinP1I GCGC 1 cut(s) 1582
HincII GTYRAC 1 cut(s) 349
HindII GTYRAC 1 cut(s) 349
HinfI GANTC 5 cut(s) 662, 1092, 1158, 2104, 2246
HpaII CCGG 4 cut(s) 699, 1218, 1608, 2208
HphI GGTGA 6 cut(s) 298, 421, 713, 1013, 1232, 2113
Hpy166II GTNNAC 3 cut(s) 349, 396, 1330
Hpy188I TCNGA 8 cut(s) 76, 85, 194, 296, 475, 895, 1157, 2165
Hpy188III TCNNGA 9 cut(s) 251, 650, 1162, 1666, 1728, 1796, 1870, 2045, 2144
Hpy8I GTNNAC 3 cut(s) 349, 396, 1330
HpyAV CCTTC 5 cut(s) 272, 319, 570, 586, 1159
HpyCH4III ACNGT 6 cut(s) 553, 836, 1134, 1327, 1407, 2203
HpyCH4IV ACGT 1 cut(s) 371
HpyF10VI GCNNNNNNNGC 6 cut(s) 77, 86, 1314, 1604, 1709, 2030
HpyF3I CTNAG 4 cut(s) 287, 894, 1096, 1942
HpySE526I ACGT 1 cut(s) 371
Hsp92II CATG 9 cut(s) 394, 627, 1039, 1119, 1547, 1575, 1775, 2077, 2147
HspAI GCGC 1 cut(s) 1582
KpnI GGTACC 1 cut(s) 1326
Ksp22I TGATCA 2 cut(s) 1038, 1125
Kzo9I GATC 8 cut(s) 646, 857, 946, 1038, 1125, 1279, 1730, 1792
LguI GCTCTTC 1 cut(s) 850
LmnI GCTCC 3 cut(s) 161, 1610, 1872
Lsp1109I GCAGC 4 cut(s) 333, 530, 1216, 1621
LweI GCATC 5 cut(s) 80, 89, 911, 1007, 1966
MabI ACCWGGT 1 cut(s) 1898
MaeI CTAG 7 cut(s) 65, 225, 585, 812, 963, 1265, 2265
MaeII ACGT 1 cut(s) 371
MalI GATC 8 cut(s) 648, 859, 948, 1040, 1127, 1281, 1732, 1794
MboI GATC 8 cut(s) 646, 857, 946, 1038, 1125, 1279, 1730, 1792
MfeI CAATTG 1 cut(s) 2241
MflI RGATCY 3 cut(s) 857, 946, 1792
MhlI GDGCHC 3 cut(s) 893, 1615, 1869
MlsI TGGCCA 2 cut(s) 422, 1308
MluNI TGGCCA 2 cut(s) 422, 1308
MlyI GAGTC 3 cut(s) 671, 1152, 2255
MmeI TCCRAC 1 cut(s) 2076
Mox20I TGGCCA 2 cut(s) 422, 1308
Mph1103I ATGCAT 1 cut(s) 637
MroXI GAANNNNTTC 4 cut(s) 392, 1169, 1512, 1560
MscI TGGCCA 2 cut(s) 422, 1308
MslI CAYNNNNRTG 2 cut(s) 1449, 1570
Msp20I TGGCCA 2 cut(s) 422, 1308
MspA1I CMGCKG 2 cut(s) 324, 461
MspCI CTTAAG 1 cut(s) 1585
MspI CCGG 4 cut(s) 699, 1218, 1608, 2208
MspR9I CCNGG 4 cut(s) 975, 999, 1900, 2209
MunI CAATTG 1 cut(s) 2241
MvaI CCWGG 3 cut(s) 975, 999, 1900
MvnI CGCG 2 cut(s) 1051, 1659
MwoI GCNNNNNNNGC 6 cut(s) 77, 86, 1314, 1604, 1709, 2030
NciI CCSGG 1 cut(s) 2209
NdeII GATC 8 cut(s) 646, 857, 946, 1038, 1125, 1279, 1730, 1792
NheI GCTAGC 1 cut(s) 962
NlaIII CATG 9 cut(s) 394, 627, 1039, 1119, 1547, 1575, 1775, 2077, 2147
NlaIV GGNNCC 7 cut(s) 191, 244, 769, 859, 948, 1324, 1794
NmeAIII GCCGAG 1 cut(s) 1610
NmuCI GTSAC 4 cut(s) 203, 836, 1902, 2247
NsiI ATGCAT 1 cut(s) 637
NspI RCATGY 1 cut(s) 394
PaeR7I CTCGAG 1 cut(s) 1980
PagI TCATGA 1 cut(s) 2143
PceI AGGCCT 1 cut(s) 1920
PciI ACATGT 1 cut(s) 390
PciSI GCTCTTC 1 cut(s) 850
PdmI GAANNNNTTC 4 cut(s) 392, 1169, 1512, 1560
PfeI GAWTC 2 cut(s) 1092, 2104
PflFI GACNNNGTC 2 cut(s) 713, 1900
PinAI ACCGGT 1 cut(s) 698
PkrI GCNGC 5 cut(s) 7, 323, 545, 1206, 1636
PleI GAGTC 3 cut(s) 670, 1152, 2254
PpsI GAGTC 3 cut(s) 670, 1152, 2254
PpuMI RGGWCCY 1 cut(s) 768
PscI ACATGT 1 cut(s) 390
Psp124BI GAGCTC 2 cut(s) 1615, 1869
Psp5II RGGWCCY 1 cut(s) 768
Psp6I CCWGG 3 cut(s) 973, 997, 1898
PspFI CCCAGC 1 cut(s) 461
PspGI CCWGG 3 cut(s) 973, 997, 1898
PspN4I GGNNCC 7 cut(s) 191, 244, 769, 859, 948, 1324, 1794
PspPI GGNCC 3 cut(s) 471, 709, 768
PspPPI RGGWCCY 1 cut(s) 768
PspXI VCTCGAGB 1 cut(s) 1980
PstI CTGCAG 2 cut(s) 403, 1600
PsuI RGATCY 3 cut(s) 857, 946, 1792
PsyI GACNNNGTC 2 cut(s) 713, 1900
PvuII CAGCTG 1 cut(s) 461
RsaI GTAC 9 cut(s) 55, 63, 258, 499, 511, 1324, 1770, 1777, 1857
RsaNI GTAC 9 cut(s) 54, 62, 257, 498, 510, 1323, 1769, 1776, 1856
RseI CAYNNNNRTG 2 cut(s) 1449, 1570
SacI GAGCTC 2 cut(s) 1615, 1869
SapI GCTCTTC 1 cut(s) 850
SatI GCNGC 5 cut(s) 6, 322, 544, 1205, 1635
Sau3AI GATC 8 cut(s) 646, 857, 946, 1038, 1125, 1279, 1730, 1792
Sau96I GGNCC 3 cut(s) 471, 709, 768
ScaI AGTACT 2 cut(s) 55, 63
SchI GAGTC 3 cut(s) 671, 1152, 2255
ScrFI CCNGG 4 cut(s) 975, 999, 1900, 2209
SduI GDGCHC 3 cut(s) 893, 1615, 1869
SexAI ACCWGGT 1 cut(s) 1898
SfaNI GCATC 5 cut(s) 80, 89, 911, 1007, 1966
SfcI CTRYAG 3 cut(s) 399, 880, 1596
SfiI GGCCNNNNNGGCC 1 cut(s) 1314
Sfr274I CTCGAG 1 cut(s) 1980
SgrAI CRCCGGYG 1 cut(s) 698
SinI GGWCC 3 cut(s) 471, 709, 768
SlaI CTCGAG 1 cut(s) 1980
SmiMI CAYNNNNRTG 2 cut(s) 1449, 1570
SmlI CTYRAG 4 cut(s) 862, 1160, 1585, 1980
SmoI CTYRAG 4 cut(s) 862, 1160, 1585, 1980
SpeI ACTAGT 2 cut(s) 64, 584
SseBI AGGCCT 1 cut(s) 1920
SsiI CCGC 5 cut(s) 126, 324, 411, 1051, 1657
SspI AATATT 2 cut(s) 265, 688
SspMI CTAG 7 cut(s) 65, 225, 585, 812, 963, 1265, 2265
SstI GAGCTC 2 cut(s) 1615, 1869
StuI AGGCCT 1 cut(s) 1920
StyD4I CCNGG 4 cut(s) 973, 997, 1898, 2207
StyI CCWWGG 3 cut(s) 1309, 1318, 2183
TaaI ACNGT 6 cut(s) 553, 836, 1134, 1327, 1407, 2203
TaiI ACGT 1 cut(s) 374
TaqI TCGA 2 cut(s) 660, 1981
TaqII GACCGA 1 cut(s) 1499
TatI WGTACW 4 cut(s) 53, 61, 497, 1768
TfiI GAWTC 2 cut(s) 1092, 2104
TscAI CASTG 5 cut(s) 403, 841, 1087, 1950, 2236
TseFI GTSAC 4 cut(s) 203, 836, 1902, 2247
TseI GCWGC 5 cut(s) 5, 321, 543, 1204, 1634
Tsp45I GTSAC 4 cut(s) 203, 836, 1902, 2247
TspRI CASTG 5 cut(s) 403, 841, 1087, 1950, 2236
Tth111I GACNNNGTC 2 cut(s) 713, 1900
Vha464I CTTAAG 1 cut(s) 1585
VpaK11BI GGWCC 3 cut(s) 471, 709, 768
XapI RAATTY 1 cut(s) 1508
XceI RCATGY 1 cut(s) 394
XcmI CCANNNNNNNNNTGG 1 cut(s) 703
XhoI CTCGAG 1 cut(s) 1980
XmnI GAANNNNTTC 4 cut(s) 392, 1169, 1512, 1560
XspI CTAG 7 cut(s) 65, 225, 585, 812, 963, 1265, 2265
ZrmI AGTACT 2 cut(s) 55, 63
Zsp2I ATGCAT 1 cut(s) 637
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.