Rroxscaffold_1G00060880

Wall-associated receptor

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
83098204 .. 83105986
7783 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00060880.1

Sequence Viewer

Length: 414 bp
ATGCTCCAACCGTGCATTGCAGCACGGTCTAATGTTGAAAAAATTAAGTTGTTCAATTCAAGGGAGCTGGAGAAAGCCACGAACCACTTTAGCATAGATAGAATTCTCGGCCGGGGAGGGCAATGTACTGTTTACAAAGGAATGTTGATCGACGGACAAATTGTTGCTGTCAAAAAGTCTAAAATAGTTTATAGAGGCGAAGTTCGACAATTCATTAATGAAATTGTGATTCTTTCACAAATTAACCACAGAAATGTGGTTAAACTATTGGGTTGTTGTTTGGAGACCAAAATTCCCCTCTTGGTCTATGAATTTCTACCAAACGGAACACTTTCTCAGTACATTCATGACCAAGATGAGGAGTTTCCTCTTACGTGGGGGACGCGATTGCGAGTATCTACCGAAGTTGCTTGA

Protein Analysis

137

Amino Acids

15.62

Weight (kDa)

8.96

Isoelectric Point (pI)

21.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 31 - 118 4e-13 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 32 - 134 9.1e-17 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000052)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16090 AT1G16110 AT1G16120 AT1G16130 AT1G16150 AT1G16160 AT1G16260 AT1G16260 AT1G16260 AT1G79670 AT1G79670
fragaria_vesca FvH4_1g22960 FvH4_3g09860 FvH4_3g10284 FvH4_3g10284 FvH4_3g10540 FvH4_3g24040 FvH4_3g35290 FvH4_3g35290 FvH4_5g06860 FvH4_5g06940 FvH4_6g15920 FvH4_6g15920 FvH4_6g37660 FvH4_6g37670 FvH4_6g37691 FvH4_6g37700 FvH4_6g37710 FvH4_6g38990 FvH4_6g39000 FvH4_6g39020 FvH4_6g39020 FvH4_6g39020 FvH4_6g39021 FvH4_6g39030 FvH4_6g39030 FvH4_6g39031 FvH4_6g39032 FvH4_6g45200 FvH4_6g45200
malus_domestica MD08G1107900.v1.1 MD09G1145100.v1.1 MD09G1145200.v1.1 MD09G1145300.v1.1 MD09G1145400.v1.1 MD09G1145500.v1.1 MD17G1131600.v1.1 MD17G1131700.v1.1 MD17G1131900.v1.1 MD17G1132000.v1.1
prunus_persica Prupe.1G188400_v2.0.a1 Prupe.1G188700_v2.0.a1 Prupe.3G180500_v2.0.a1 Prupe.3G180600_v2.0.a1 Prupe.3G180700_v2.0.a1 Prupe.3G181000_v2.0.a1 Prupe.3G181100_v2.0.a1 Prupe.3G181100_v2.0.a1 Prupe.3G181200_v2.0.a1 Prupe.3G181200_v2.0.a1 Prupe.3G181400_v2.0.a1 Prupe.3G181500_v2.0.a1 Prupe.3G181600_v2.0.a1 Prupe.3G181800_v2.0.a1 Prupe.3G181900_v2.0.a1 Prupe.3G182000_v2.0.a1 Prupe.3G182100_v2.0.a1 Prupe.3G182200_v2.0.a1 Prupe.3G182300_v2.0.a1 Prupe.3G182400_v2.0.a1 Prupe.3G182500_v2.0.a1 Prupe.3G182600_v2.0.a1 Prupe.3G182700_v2.0.a1 Prupe.5G051200_v2.0.a1 Prupe.5G051300_v2.0.a1 Prupe.5G051400_v2.0.a1 Prupe.5G051500_v2.0.a1 Prupe.5G051600_v2.0.a1 Prupe.5G051600_v2.0.a1 Prupe.5G051800_v2.0.a1
pyrus_communis pycom09g06470 pycom09g06490 pycom09g06510 pycom09g06520 pycom09g06570 pycom09g06580 pycom17g12440 pycom17g12450 pycom17g12530
rosa_chinensis RchiOBHm_Chr2g0117481 RchiOBHm_Chr2g0128321 RchiOBHm_Chr2g0128331 RchiOBHm_Chr2g0128581 RchiOBHm_Chr2g0128591 RchiOBHm_Chr2g0150651 RchiOBHm_Chr2g0150661 RchiOBHm_Chr2g0150741 RchiOBHm_Chr2g0150781 RchiOBHm_Chr2g0152581 RchiOBHm_Chr2g0152591 RchiOBHm_Chr2g0152641 RchiOBHm_Chr2g0152661 RchiOBHm_Chr2g0152711 RchiOBHm_Chr2g0152731 RchiOBHm_Chr2g0152871 RchiOBHm_Chr2g0152881 RchiOBHm_Chr2g0152901 RchiOBHm_Chr2g0152921 RchiOBHm_Chr2g0152931 RchiOBHm_Chr2g0152941 RchiOBHm_Chr3g0469621 RchiOBHm_Chr3g0469631 RchiOBHm_Chr5g0015591 RchiOBHm_Chr5g0046061 RchiOBHm_Chr5g0047341 RchiOBHm_Chr5g0063341 RchiOBHm_Chr5g0063351 RchiOBHm_Chr6g0264381 RchiOBHm_Chr7g0191741 RchiOBHm_Chr7g0210751 RchiOBHm_Chr7g0221871 RchiOBHm_Chr7g0225671 RchiOBHm_Chr7g0225891 RchiOBHm_Chr7g0225901 RchiOBHm_Chr7g0225961 RchiOBHm_Chr7g0225971 RchiOBHm_Chr7g0234031 RchiOBHm_Chr7g0234041
rosa_laevigata RLG00000001780 RLG00000001784 RLG00000001785 RLG00000001788 RLG00000001789 RLG00000001793 RLG00000001794 RLG00000002941 RLG00000004430 RLG00000014259 RLG00000018349 RLG00000019001 RLG00000019005 RLG00000019011 RLG00000020503 RLG00000020507 RLG00000020648 RLG00000020649 RLG00000020651 RLG00000020652 RLG00000020653 RLG00000020655 RLG00000020656 RLG00000020657 RLG00000023668 RLG00000024331 RLG00000034386 RLG00000035624 RLG00000035625
rosa_multiflora Rmu_co8401977.1_g000001 Rmu_co8409989.1_g000001 Rmu_co8432067.1_g000001 Rmu_co8491011.1_g000001 Rmu_sc0000580.1_g000085 Rmu_sc0000740.1_g000012 Rmu_sc0000740.1_g000014 Rmu_sc0000837.1_g000041 Rmu_sc0000837.1_g000077 Rmu_sc0001552.1_g000008 Rmu_sc0001617.1_g000001 Rmu_sc0002082.1_g000006 Rmu_sc0002082.1_g000007 Rmu_sc0002082.1_g000022 Rmu_sc0002989.1_g000013 Rmu_sc0003064.1_g000011 Rmu_sc0003127.1_g000003 Rmu_sc0003127.1_g000014 Rmu_sc0003127.1_g000028 Rmu_sc0003127.1_g000032 Rmu_sc0003127.1_g000034 Rmu_sc0003127.1_g000035 Rmu_sc0003127.1_g000054 Rmu_sc0003127.1_g000055 Rmu_sc0003465.1_g000034 Rmu_sc0005223.1_g000021 Rmu_sc0005302.1_g000004 Rmu_sc0005378.1_g000005 Rmu_sc0005378.1_g000007 Rmu_sc0005378.1_g000017 Rmu_sc0005378.1_g000034 Rmu_sc0005378.1_g000039 Rmu_sc0005378.1_g000042 Rmu_sc0005378.1_g000056 Rmu_sc0005378.1_g000057 Rmu_sc0005378.1_g000058 Rmu_sc0006483.1_g000013 Rmu_sc0008775.1_g000006 Rmu_sc0008775.1_g000011 Rmu_sc0009104.1_g000010 Rmu_sc0009104.1_g000011 Rmu_sc0009104.1_g000020 Rmu_sc0010960.1_g000006 Rmu_sc0011737.1_g000002 Rmu_sc0011737.1_g000004 Rmu_sc0012875.1_g000003 Rmu_sc0013122.1_g000002 Rmu_sc0018944.1_g000002 Rmu_sc0020155.1_g000001 Rmu_sc0020156.1_g000001 Rmu_ssc0000233.1_g000012 Rmu_ssc0000233.1_g000013 Rmu_ssc0000233.1_g000030 Rmu_ssc0000233.1_g000044 Rmu_ssc0000233.1_g000047 Rmu_ssc0000233.1_g000052 Rmu_ssc0000233.1_g000054 Rmu_ssc0000233.1_g000055 Rmu_ssc0000233.1_g000080 Rmu_ssc0000233.1_g000082 Rmu_ssc0000233.1_g000087 Rmu_ssc0000233.1_g000094 Rmu_ssc0000480.1_g000060 Rmu_ssc0000480.1_g000061
rosa_roxburghii Rroxscaffold_1G00017360 Rroxscaffold_1G00017370 Rroxscaffold_1G00060880 Rroxscaffold_2G00095370 Rroxscaffold_2G00095420 Rroxscaffold_2G00095450 Rroxscaffold_2G00095460 Rroxscaffold_2G00095490 Rroxscaffold_2G00095560 Rroxscaffold_2G00095570 Rroxscaffold_2G00096960 Rroxscaffold_2G00097010 Rroxscaffold_2G00126500 Rroxscaffold_3G00233390 Rroxscaffold_3G00233580 Rroxscaffold_3G00263590 Rroxscaffold_6G00411660
rosa_rugosa Rorug01G0142700.1 Rorug01G0148600.1 Rorug02G0212800 Rorug02G0422400 Rorug02G0434700 Rorug02G0434800 Rorug02G0435000 Rorug02G0435200 Rorug02G0435300 Rorug02G0435400 Rorug02G0435700 Rorug02G0435800 Rorug02G0436200 Rorug02G0436300 Rorug03G0102800 Rorug04G0123600 Rorug04G0123700 Rorug04G0123800 Rorug04G0124000 Rorug04G0124000 Rorug04G0124500 Rorug04G0124700 Rorug04G0124900 Rorug05G0028600.1 Rorug05G0356100 Rorug05G0356800 Rorug06G0011900 Rorug07G0092900 Rorug07G0122800 Rorug07G0232500 Rorug07G0232600 Rorug07G0232700
rosa_samantha Rh1AG408900 Rh2AG332700 Rh2AG333400 Rh2AG482100 Rh2AG482200 Rh2AG482500 Rh2AG496000 Rh2AG496100 Rh2AG496200 Rh2AG496300 Rh2AG497100 Rh2AG497200 Rh2AG497400 Rh2BG280300 Rh2BG340500 Rh2BG494400 Rh2BG494900 Rh2BG507800 Rh2BG507900 Rh2BG508000 Rh2BG508100 Rh2BG508300 Rh2BG508500 Rh2BG508700 Rh2BG509200 Rh2BG512700 Rh2CG271900 Rh2CG319100 Rh2CG319400 Rh2CG357200 Rh2CG468400 Rh2CG468500 Rh2CG468800 Rh2CG482200 Rh2CG482300 Rh2CG482400 Rh2CG482500 Rh2CG483200 Rh2CG483300 Rh2CG483500 Rh2CG483600 Rh2DG294600 Rh2DG357100 Rh2DG357700 Rh2DG503400 Rh2DG504300 Rh2DG504900 Rh2DG505500 Rh2DG505900 Rh2DG519000 Rh2DG519100 Rh2DG519300 Rh2DG519400 Rh2DG520000 Rh2DG520200 Rh2DG520500 Rh2DG521000 Rh2DG524300 Rh3AG152400 Rh3AG334400 Rh3BG176100 Rh3CG167200 Rh3DG199400 Rh3DG199500 Rh5AG415900 Rh5BG430800 Rh5CG454300 Rh5DG444600 Rh6AG247500 Rh6AG247700 Rh7AG120600 Rh7AG369800 Rh7AG370800 Rh7AG468300 Rh7BG366400 Rh7CG125200 Rh7CG388700 Rh7CG389400 Rh7CG459600 Rh7DG123300 Rh7DG123400 Rh7DG123800 Rh7DG123900 Rh7DG377200
rosa_wichuraiana Rw0G004850 Rw0G004870 Rw0G013120 Rw1G013520 Rw2G026850 Rw2G026910 Rw2G027120 Rw2G039340 Rw2G039360 Rw2G039410 Rw2G039420 Rw2G039440 Rw2G039520 Rw2G040810 Rw2G040830 Rw2G040850 Rw2G040860 Rw2G040880 Rw2G041210 Rw2G041220 Rw2G041240 Rw2G041250 Rw3G014370 Rw5G010520 Rw5G039070 Rw6G021410 Rw6G021420 Rw7G010280 Rw7G021780 Rw7G031820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 385
AcoI YGGCCR 1 cut(s) 109
AcsI RAATTY 3 cut(s) 102, 291, 311
AfaI GTAC 2 cut(s) 127, 341
AfiI CCNNNNNNNGG 1 cut(s) 358
AgsI TTSAA 3 cut(s) 38, 55, 60
AluBI AGCT 1 cut(s) 67
AluI AGCT 1 cut(s) 67
Alw26I GTCTC 1 cut(s) 278
AoxI GGCC 1 cut(s) 109
ApeKI GCWGC 1 cut(s) 20
ApoI RAATTY 3 cut(s) 102, 291, 311
AseI ATTAAT 1 cut(s) 216
Asp700I GAANNNNTTC 1 cut(s) 331
AsuC2I CCSGG 1 cut(s) 113
BbvI GCAGC 1 cut(s) 32
BcnI CCSGG 1 cut(s) 113
BcoDI GTCTC 1 cut(s) 278
BisI GCNGC 1 cut(s) 21
BlsI GCNGC 1 cut(s) 22
Bme1390I CCNGG 1 cut(s) 113
BmrFI CCNGG 1 cut(s) 113
BpmI CTGGAG 1 cut(s) 89
BpuMI CCSGG 1 cut(s) 113
BsaAI YACGTR 1 cut(s) 375
BsaI GGTCTC 1 cut(s) 278
BsaJI CCNNGG 1 cut(s) 112
Bsc4I CCNNNNNNNGG 1 cut(s) 358
Bse3DI GCAATG 2 cut(s) 15, 128
BseDI CCNNGG 1 cut(s) 112
BseLI CCNNNNNNNGG 1 cut(s) 358
BseMI GCAATG 2 cut(s) 15, 128
BseMII CTCAG 1 cut(s) 350
BseRI GAGGAG 1 cut(s) 374
BseX3I CGGCCG 1 cut(s) 109
BseXI GCAGC 1 cut(s) 32
Bsh1236I CGCG 1 cut(s) 385
Bsh1285I CGRYCG 1 cut(s) 112
BshFI GGCC 1 cut(s) 111
BsiEI CGRYCG 1 cut(s) 112
BsiSI CCGG 1 cut(s) 112
BslFI GGGAC 1 cut(s) 394
BslI CCNNNNNNNGG 1 cut(s) 358
BsmAI GTCTC 1 cut(s) 278
BsmFI GGGAC 1 cut(s) 394
BsnI GGCC 1 cut(s) 111
Bso31I GGTCTC 1 cut(s) 278
Bsp143I GATC 1 cut(s) 147
BspANI GGCC 1 cut(s) 111
BspCNI CTCAG 1 cut(s) 349
BspFNI CGCG 1 cut(s) 385
BspHI TCATGA 1 cut(s) 346
BspTNI GGTCTC 1 cut(s) 278
BsrDI GCAATG 2 cut(s) 15, 128
BssECI CCNNGG 1 cut(s) 112
BssMI GATC 1 cut(s) 147
Bst4CI ACNGT 3 cut(s) 12, 27, 130
BstBAI YACGTR 1 cut(s) 375
BstDEI CTNAG 1 cut(s) 336
BstFNI CGCG 1 cut(s) 385
BstKTI GATC 1 cut(s) 150
BstMAI GTCTC 1 cut(s) 278
BstMBI GATC 1 cut(s) 147
BstMCI CGRYCG 1 cut(s) 112
BstSCI CCNGG 1 cut(s) 111
BstUI CGCG 1 cut(s) 385
BstV1I GCAGC 1 cut(s) 32
BstZI CGGCCG 1 cut(s) 109
BsuRI GGCC 1 cut(s) 111
CciI TCATGA 1 cut(s) 346
CseI GACGC 1 cut(s) 391
Csp6I GTAC 2 cut(s) 126, 340
CviAII CATG 1 cut(s) 347
CviJI RGCY 3 cut(s) 67, 77, 111
CviKI_1 RGCY 3 cut(s) 67, 77, 111
CviQI GTAC 2 cut(s) 126, 340
DdeI CTNAG 1 cut(s) 336
DpnI GATC 1 cut(s) 149
DpnII GATC 1 cut(s) 147
EaeI YGGCCR 1 cut(s) 109
EagI CGGCCG 1 cut(s) 109
EclXI CGGCCG 1 cut(s) 109
Eco31I GGTCTC 1 cut(s) 278
Eco52I CGGCCG 1 cut(s) 109
EcoRI GAATTC 1 cut(s) 102
FaeI CATG 1 cut(s) 350
FaiI YATR 4 cut(s) 95, 192, 309, 348
FaqI GGGAC 1 cut(s) 394
FatI CATG 1 cut(s) 346
Fnu4HI GCNGC 1 cut(s) 21
Fsp4HI GCNGC 1 cut(s) 21
GluI GCNGC 1 cut(s) 21
GsuI CTGGAG 1 cut(s) 89
HaeIII GGCC 1 cut(s) 111
HapII CCGG 1 cut(s) 112
HgaI GACGC 1 cut(s) 391
Hin1II CATG 1 cut(s) 350
HinfI GANTC 1 cut(s) 229
HpaII CCGG 1 cut(s) 112
Hpy166II GTNNAC 1 cut(s) 133
Hpy188III TCNNGA 1 cut(s) 347
Hpy8I GTNNAC 1 cut(s) 133
Hpy99I CGWCG 1 cut(s) 155
HpyCH4III ACNGT 3 cut(s) 12, 27, 130
HpyCH4IV ACGT 1 cut(s) 374
HpyCH4V TGCA 2 cut(s) 15, 20
HpyF3I CTNAG 1 cut(s) 336
HpySE526I ACGT 1 cut(s) 374
Hsp92II CATG 1 cut(s) 350
Kzo9I GATC 1 cut(s) 147
LmnI GCTCC 2 cut(s) 9, 64
LpnPI CCDG 2 cut(s) 53, 125
Lsp1109I GCAGC 1 cut(s) 32
MaeII ACGT 1 cut(s) 374
MalI GATC 1 cut(s) 149
MboI GATC 1 cut(s) 147
MluCI AATT 9 cut(s) 42, 55, 102, 159, 209, 222, 240, 291, 311
MmeI TCCRAC 1 cut(s) 31
MnlI CCTC 5 cut(s) 110, 188, 308, 352, 378
MroXI GAANNNNTTC 1 cut(s) 331
MseI TTAA 4 cut(s) 45, 216, 243, 261
MslI CAYNNNNRTG 1 cut(s) 252
MspI CCGG 1 cut(s) 112
MspR9I CCNGG 1 cut(s) 113
MvnI CGCG 1 cut(s) 385
NciI CCSGG 1 cut(s) 113
NdeII GATC 1 cut(s) 147
NlaIII CATG 1 cut(s) 350
NmeAIII GCCGAG 1 cut(s) 87
PagI TCATGA 1 cut(s) 346
PdmI GAANNNNTTC 1 cut(s) 331
PfeI GAWTC 1 cut(s) 229
PkrI GCNGC 1 cut(s) 22
Ppu21I YACGTR 1 cut(s) 375
PshBI ATTAAT 1 cut(s) 216
RsaI GTAC 2 cut(s) 127, 341
RsaNI GTAC 2 cut(s) 126, 340
RseI CAYNNNNRTG 1 cut(s) 252
SaqAI TTAA 4 cut(s) 45, 216, 243, 261
SatI GCNGC 1 cut(s) 21
Sau3AI GATC 1 cut(s) 147
ScrFI CCNGG 1 cut(s) 113
SetI ASST 2 cut(s) 69, 377
SmiMI CAYNNNNRTG 1 cut(s) 252
Sse9I AATT 9 cut(s) 42, 55, 102, 159, 209, 222, 240, 291, 311
StyD4I CCNGG 1 cut(s) 111
TaaI ACNGT 3 cut(s) 12, 27, 130
TaiI ACGT 1 cut(s) 377
TaqI TCGA 2 cut(s) 150, 205
TasI AATT 9 cut(s) 42, 55, 102, 159, 209, 222, 240, 291, 311
TatI WGTACW 2 cut(s) 125, 339
TfiI GAWTC 1 cut(s) 229
Tru1I TTAA 4 cut(s) 45, 216, 243, 261
Tru9I TTAA 4 cut(s) 45, 216, 243, 261
TseI GCWGC 1 cut(s) 20
TspDTI ATGAA 4 cut(s) 202, 234, 324, 335
TspGWI ACGGA 2 cut(s) 168, 339
VspI ATTAAT 1 cut(s) 216
XapI RAATTY 3 cut(s) 102, 291, 311
XmnI GAANNNNTTC 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.