FvH4_6g39031

wall-associated receptor kinase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000052
Physical Location & Seq
Reverse (-)
30913455 .. 30916431
2977 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g39031.t1

Sequence Viewer

Length: 2232 bp
ATGCAATCCCTAGTTCATCATATGATATTTGTTGTAGTTTTATGTTTATGGTTCTTGAGCACTTCAACACCAGGAGTAGCAGCAGAATCTAGAGCGGCGCTGCCGATAGCAAAGCCGAGTTGCCAAGAGAAATGCGGAAATGTCAGCATCCCATTCCCTTTTGGGATCGGACCTGATAAAGATTGTTACTTCGACGAATGGTTTGAAATAGACTGCAACCTGTCTACTAGGCACAAGCCTTTCTTGAAGCTTACACAACTGGAGGTGCTCAACATTTCCATCAAAGCCGGCGCGCTTCAGGTGAACAGCCCCGTAACGTTCTTCTGCAACGTAAAAGGAAGTAGCCAGCCTGCTGATCTGACCGGAAGCCCTTTCGTGTACTCTCAGAGACAAAACAGATTCACAGCAGCGACTTGCGGCTTTGTCTCGTTGGTGAGCTCAGACCAGTCTGTGGTTGGCGGGTGTAGGTCAATTTGTGATAAGCATTATATCGGTAGATACTCTGATAGCTGTGATATTGGTACTAATTGTTGCCAGACGAGTATTCCTCCGTATCTCAGAGTTGTCACTGCTAGCATAATGGTGGAAGGACCGAGCAACATGACTGGCCGAAATGACAGTAGAATGCCGGATTGCAGTGACTATGCGTTCCTGGTTGATAAAGATTGGTTTGAGGCTGCATCAAACTATAGCGCCATTAGGCATATGCTCCATGTTCCTGTGGCACTGGAATGGAGTGTTATCAACGGCGCTGCTTCGTCGGTTGCGTTTCGAGGAAATGAGAAATGCCATATTGGCACTTCTTTGGCATTCAATCAGTCGGTGCTTTCTTGCAGCTGCCCACAAGGGTTTGATGGAAATCCCTATCTTCTGCAACCTTGTCAAGACATTGATGAGTGCAAAGATGGTACTAAACGATGCTGGCCGGGCAGCAAGTGCGTAAACCTTCCGGGTTCGTTCAAATGCAAGGACAACAAGGATACAATCAAATTGGCACTTGCAGGTCTTGGTTCAAGTCTTGGACTGTTATTATTACTTATTGGTGCATGGTGGGTACACAAACTGGTGAAGAAAAGGAAAAACATCAGACGGAAGGAAATGGCATTCAAAAGAAACGGGGGTTTGTTGTTAAAAAGACAGTTATCATCTGGTGAAGTTAACCTTGAGAAAATAAAGTTGTTCAAATCAAAAGAGTTGGAGAAGTCCACTGATAATTTTCATGTTGATAGAATCCTTGGCAAAGGTGGCCAAGGTACTGTCTACAAAGGTATGCTAACAGATGGAAGAATCGTTGCGGTAAAGAGGTCTACAAAGGTGGACGAAGCTAGACTTTCACAGTTTATAAATGAGGTTGTTATTCTTTCACAAATCAATCACAGAAATGTGGTTAAGCTATTAGGTTGTTGTTTAGAGACAGAGGTTCCTCTTTTAGTCTATGAGTTTATTCCAAATGGATCCCTTTCTCAATATATTCATGAGCAGAACGAGGATTTTCCACTTACATGGGAATTGCGCATAAGGATTGCCACGGAAATTGCAGGAGCTCTTTCCTACTTACATGGTGCTGCTTCGATTCCCATATTTCACAGAGACATCAAGTCGACAAATATATTGCTAGATGAAAAATACAGAGCAAAAGTTGCCGACTTTGGGACTTCTAGATCAGTTGCCATAGACCAAACTCATTTGACAACACTTGTGTATGGGACATTTGGTTACTTGGACCCAGAATACTTCCAGTCGAGCCAATTTACGGATAAAAGTGATGTGTATAGCTTTGGAGTAGTCCTAGTTGAACTTTTGAGTGGACAAAAACCAATCTCTTCGACAAGATCACAAGAAGAAGGGCGGAGTCTTGCAACACATTTCATTATTTTGATGCAGGATGATCGACTATTTGAAATTGTAGACGCTCAAGTTTTGAAAGAAGCCTCTAGAGAAGATATCTTAGTAGTTGCCAATCTTGCAAGAAGATGTTTGAATCTGAATGGCAGGAACCGCCCAACAATGAGAGAGGTAACAGCAGAGCTCGAGGGGATTCAGATGTCACAAAACACAAATAATGATGATGAGGAGCAAAATCATGAAGAAGTTGATATTTTCAGGTATGATTCAATTGAGCAATGGGATGTTGCATCAACTTCAACTGGAACAGTAACAGGAACAAGGTCAGGTGTGGCTGCTGGTCCGCCTTCATCGTCATCGCAAGGAATTGCACTGTTATCTCTCTAG

Protein Analysis

744

Amino Acids

82.21

Weight (kDa)

6.61

Isoelectric Point (pI)

40.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 41 - 102 1.1e-12 Wall-associated receptor kinase galacturonan-binding
EGF_CA PF07645 296 - 323 1.7e-06 Calcium-binding EGF domain
Pkinase PF00069 406 - 674 1.2e-48 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 407 - 677 1.9e-47 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000052)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16090 AT1G16110 AT1G16120 AT1G16130 AT1G16150 AT1G16160 AT1G16260 AT1G16260 AT1G16260 AT1G79670 AT1G79670
fragaria_vesca FvH4_1g22960 FvH4_3g09860 FvH4_3g10284 FvH4_3g10284 FvH4_3g10540 FvH4_3g24040 FvH4_3g35290 FvH4_3g35290 FvH4_5g06860 FvH4_5g06940 FvH4_6g15920 FvH4_6g15920 FvH4_6g37660 FvH4_6g37670 FvH4_6g37691 FvH4_6g37700 FvH4_6g37710 FvH4_6g38990 FvH4_6g39000 FvH4_6g39020 FvH4_6g39020 FvH4_6g39020 FvH4_6g39021 FvH4_6g39030 FvH4_6g39030 FvH4_6g39031 FvH4_6g39032 FvH4_6g45200 FvH4_6g45200
malus_domestica MD08G1107900.v1.1 MD09G1145100.v1.1 MD09G1145200.v1.1 MD09G1145300.v1.1 MD09G1145400.v1.1 MD09G1145500.v1.1 MD17G1131600.v1.1 MD17G1131700.v1.1 MD17G1131900.v1.1 MD17G1132000.v1.1
prunus_persica Prupe.1G188400_v2.0.a1 Prupe.1G188700_v2.0.a1 Prupe.3G180500_v2.0.a1 Prupe.3G180600_v2.0.a1 Prupe.3G180700_v2.0.a1 Prupe.3G181000_v2.0.a1 Prupe.3G181100_v2.0.a1 Prupe.3G181100_v2.0.a1 Prupe.3G181200_v2.0.a1 Prupe.3G181200_v2.0.a1 Prupe.3G181400_v2.0.a1 Prupe.3G181500_v2.0.a1 Prupe.3G181600_v2.0.a1 Prupe.3G181800_v2.0.a1 Prupe.3G181900_v2.0.a1 Prupe.3G182000_v2.0.a1 Prupe.3G182100_v2.0.a1 Prupe.3G182200_v2.0.a1 Prupe.3G182300_v2.0.a1 Prupe.3G182400_v2.0.a1 Prupe.3G182500_v2.0.a1 Prupe.3G182600_v2.0.a1 Prupe.3G182700_v2.0.a1 Prupe.5G051200_v2.0.a1 Prupe.5G051300_v2.0.a1 Prupe.5G051400_v2.0.a1 Prupe.5G051500_v2.0.a1 Prupe.5G051600_v2.0.a1 Prupe.5G051600_v2.0.a1 Prupe.5G051800_v2.0.a1
pyrus_communis pycom09g06470 pycom09g06490 pycom09g06510 pycom09g06520 pycom09g06570 pycom09g06580 pycom17g12440 pycom17g12450 pycom17g12530
rosa_chinensis RchiOBHm_Chr2g0117481 RchiOBHm_Chr2g0128321 RchiOBHm_Chr2g0128331 RchiOBHm_Chr2g0128581 RchiOBHm_Chr2g0128591 RchiOBHm_Chr2g0150651 RchiOBHm_Chr2g0150661 RchiOBHm_Chr2g0150741 RchiOBHm_Chr2g0150781 RchiOBHm_Chr2g0152581 RchiOBHm_Chr2g0152591 RchiOBHm_Chr2g0152641 RchiOBHm_Chr2g0152661 RchiOBHm_Chr2g0152711 RchiOBHm_Chr2g0152731 RchiOBHm_Chr2g0152871 RchiOBHm_Chr2g0152881 RchiOBHm_Chr2g0152901 RchiOBHm_Chr2g0152921 RchiOBHm_Chr2g0152931 RchiOBHm_Chr2g0152941 RchiOBHm_Chr3g0469621 RchiOBHm_Chr3g0469631 RchiOBHm_Chr5g0015591 RchiOBHm_Chr5g0046061 RchiOBHm_Chr5g0047341 RchiOBHm_Chr5g0063341 RchiOBHm_Chr5g0063351 RchiOBHm_Chr6g0264381 RchiOBHm_Chr7g0191741 RchiOBHm_Chr7g0210751 RchiOBHm_Chr7g0221871 RchiOBHm_Chr7g0225671 RchiOBHm_Chr7g0225891 RchiOBHm_Chr7g0225901 RchiOBHm_Chr7g0225961 RchiOBHm_Chr7g0225971 RchiOBHm_Chr7g0234031 RchiOBHm_Chr7g0234041
rosa_laevigata RLG00000001780 RLG00000001784 RLG00000001785 RLG00000001788 RLG00000001789 RLG00000001793 RLG00000001794 RLG00000002941 RLG00000004430 RLG00000014259 RLG00000018349 RLG00000019001 RLG00000019005 RLG00000019011 RLG00000020503 RLG00000020507 RLG00000020648 RLG00000020649 RLG00000020651 RLG00000020652 RLG00000020653 RLG00000020655 RLG00000020656 RLG00000020657 RLG00000023668 RLG00000024331 RLG00000034386 RLG00000035624 RLG00000035625
rosa_multiflora Rmu_co8401977.1_g000001 Rmu_co8409989.1_g000001 Rmu_co8432067.1_g000001 Rmu_co8491011.1_g000001 Rmu_sc0000580.1_g000085 Rmu_sc0000740.1_g000012 Rmu_sc0000740.1_g000014 Rmu_sc0000837.1_g000041 Rmu_sc0000837.1_g000077 Rmu_sc0001552.1_g000008 Rmu_sc0001617.1_g000001 Rmu_sc0002082.1_g000006 Rmu_sc0002082.1_g000007 Rmu_sc0002082.1_g000022 Rmu_sc0002989.1_g000013 Rmu_sc0003064.1_g000011 Rmu_sc0003127.1_g000003 Rmu_sc0003127.1_g000014 Rmu_sc0003127.1_g000028 Rmu_sc0003127.1_g000032 Rmu_sc0003127.1_g000034 Rmu_sc0003127.1_g000035 Rmu_sc0003127.1_g000054 Rmu_sc0003127.1_g000055 Rmu_sc0003465.1_g000034 Rmu_sc0005223.1_g000021 Rmu_sc0005302.1_g000004 Rmu_sc0005378.1_g000005 Rmu_sc0005378.1_g000007 Rmu_sc0005378.1_g000017 Rmu_sc0005378.1_g000034 Rmu_sc0005378.1_g000039 Rmu_sc0005378.1_g000042 Rmu_sc0005378.1_g000056 Rmu_sc0005378.1_g000057 Rmu_sc0005378.1_g000058 Rmu_sc0006483.1_g000013 Rmu_sc0008775.1_g000006 Rmu_sc0008775.1_g000011 Rmu_sc0009104.1_g000010 Rmu_sc0009104.1_g000011 Rmu_sc0009104.1_g000020 Rmu_sc0010960.1_g000006 Rmu_sc0011737.1_g000002 Rmu_sc0011737.1_g000004 Rmu_sc0012875.1_g000003 Rmu_sc0013122.1_g000002 Rmu_sc0018944.1_g000002 Rmu_sc0020155.1_g000001 Rmu_sc0020156.1_g000001 Rmu_ssc0000233.1_g000012 Rmu_ssc0000233.1_g000013 Rmu_ssc0000233.1_g000030 Rmu_ssc0000233.1_g000044 Rmu_ssc0000233.1_g000047 Rmu_ssc0000233.1_g000052 Rmu_ssc0000233.1_g000054 Rmu_ssc0000233.1_g000055 Rmu_ssc0000233.1_g000080 Rmu_ssc0000233.1_g000082 Rmu_ssc0000233.1_g000087 Rmu_ssc0000233.1_g000094 Rmu_ssc0000480.1_g000060 Rmu_ssc0000480.1_g000061
rosa_roxburghii Rroxscaffold_1G00017360 Rroxscaffold_1G00017370 Rroxscaffold_1G00060880 Rroxscaffold_2G00095370 Rroxscaffold_2G00095420 Rroxscaffold_2G00095450 Rroxscaffold_2G00095460 Rroxscaffold_2G00095490 Rroxscaffold_2G00095560 Rroxscaffold_2G00095570 Rroxscaffold_2G00096960 Rroxscaffold_2G00097010 Rroxscaffold_2G00126500 Rroxscaffold_3G00233390 Rroxscaffold_3G00233580 Rroxscaffold_3G00263590 Rroxscaffold_6G00411660
rosa_rugosa Rorug01G0142700.1 Rorug01G0148600.1 Rorug02G0212800 Rorug02G0422400 Rorug02G0434700 Rorug02G0434800 Rorug02G0435000 Rorug02G0435200 Rorug02G0435300 Rorug02G0435400 Rorug02G0435700 Rorug02G0435800 Rorug02G0436200 Rorug02G0436300 Rorug03G0102800 Rorug04G0123600 Rorug04G0123700 Rorug04G0123800 Rorug04G0124000 Rorug04G0124000 Rorug04G0124500 Rorug04G0124700 Rorug04G0124900 Rorug05G0028600.1 Rorug05G0356100 Rorug05G0356800 Rorug06G0011900 Rorug07G0092900 Rorug07G0122800 Rorug07G0232500 Rorug07G0232600 Rorug07G0232700
rosa_samantha Rh1AG408900 Rh2AG332700 Rh2AG333400 Rh2AG482100 Rh2AG482200 Rh2AG482500 Rh2AG496000 Rh2AG496100 Rh2AG496200 Rh2AG496300 Rh2AG497100 Rh2AG497200 Rh2AG497400 Rh2BG280300 Rh2BG340500 Rh2BG494400 Rh2BG494900 Rh2BG507800 Rh2BG507900 Rh2BG508000 Rh2BG508100 Rh2BG508300 Rh2BG508500 Rh2BG508700 Rh2BG509200 Rh2BG512700 Rh2CG271900 Rh2CG319100 Rh2CG319400 Rh2CG357200 Rh2CG468400 Rh2CG468500 Rh2CG468800 Rh2CG482200 Rh2CG482300 Rh2CG482400 Rh2CG482500 Rh2CG483200 Rh2CG483300 Rh2CG483500 Rh2CG483600 Rh2DG294600 Rh2DG357100 Rh2DG357700 Rh2DG503400 Rh2DG504300 Rh2DG504900 Rh2DG505500 Rh2DG505900 Rh2DG519000 Rh2DG519100 Rh2DG519300 Rh2DG519400 Rh2DG520000 Rh2DG520200 Rh2DG520500 Rh2DG521000 Rh2DG524300 Rh3AG152400 Rh3AG334400 Rh3BG176100 Rh3CG167200 Rh3DG199400 Rh3DG199500 Rh5AG415900 Rh5BG430800 Rh5CG454300 Rh5DG444600 Rh6AG247500 Rh6AG247700 Rh7AG120600 Rh7AG369800 Rh7AG370800 Rh7AG468300 Rh7BG366400 Rh7CG125200 Rh7CG388700 Rh7CG389400 Rh7CG459600 Rh7DG123300 Rh7DG123400 Rh7DG123800 Rh7DG123900 Rh7DG377200
rosa_wichuraiana Rw0G004850 Rw0G004870 Rw0G013120 Rw1G013520 Rw2G026850 Rw2G026910 Rw2G027120 Rw2G039340 Rw2G039360 Rw2G039410 Rw2G039420 Rw2G039440 Rw2G039520 Rw2G040810 Rw2G040830 Rw2G040850 Rw2G040860 Rw2G040880 Rw2G041210 Rw2G041220 Rw2G041240 Rw2G041250 Rw3G014370 Rw5G010520 Rw5G039070 Rw6G021410 Rw6G021420 Rw7G010280 Rw7G021780 Rw7G031820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1343
Acc16I TGCGCA 1 cut(s) 1514
Acc36I ACCTGC 1 cut(s) 992
AccB7I CCANNNNNTGG 1 cut(s) 451
AccBSI CCGCTC 1 cut(s) 95
AccI GTMKAC 5 cut(s) 224, 1260, 1307, 1601, 1908
AccII CGCG 1 cut(s) 293
AciI CCGC 8 cut(s) 95, 135, 417, 459, 1295, 1849, 1999, 2189
AclI AACGTT 1 cut(s) 317
AclWI GGATC 3 cut(s) 173, 1449, 1462
AcoI YGGCCR 3 cut(s) 607, 923, 1246
AcuI CTGAAG 1 cut(s) 281
AfaI GTAC 5 cut(s) 380, 523, 910, 1056, 1255
AfiI CCNNNNNNNGG 3 cut(s) 451, 1650, 1753
AhdI GACNNNNNGTC 1 cut(s) 1597
AjnI CCWGG 2 cut(s) 70, 651
AluBI AGCT 9 cut(s) 250, 438, 510, 837, 1325, 1393, 1544, 1776, 2029
AluI AGCT 9 cut(s) 250, 438, 510, 837, 1325, 1393, 1544, 1776, 2029
Alw21I GWGCWC 5 cut(s) 62, 270, 440, 1546, 2031
Alw26I GTCTC 4 cut(s) 382, 430, 1406, 1584
AlwI GGATC 3 cut(s) 173, 1449, 1462
Ama87I CYCGRG 1 cut(s) 2030
AoxI GGCC 3 cut(s) 607, 923, 1246
ArsI GACNNNNNNTTYG 2 cut(s) 185, 217
AspLEI GCGC 6 cut(s) 100, 293, 295, 695, 752, 1515
AspS9I GGNCC 4 cut(s) 170, 590, 1723, 2186
AsuC2I CCSGG 2 cut(s) 927, 951
AsuHPI GGTGA 4 cut(s) 313, 445, 1078, 1163
AsuNHI GCTAGC 1 cut(s) 572
AvaI CYCGRG 1 cut(s) 2030
AvaII GGWCC 4 cut(s) 170, 590, 1723, 2186
BalI TGGCCA 1 cut(s) 1248
BamHI GGATCC 1 cut(s) 1454
BanII GRGCYC 3 cut(s) 440, 1546, 2031
Bbv12I GWGCWC 5 cut(s) 62, 270, 440, 1546, 2031
BccI CCATC 4 cut(s) 287, 848, 899, 1274
BceAI ACGGC 1 cut(s) 763
BcgI CGANNNNNNTGC 2 cut(s) 1871, 1905
BciT130I CCWGG 2 cut(s) 72, 653
BciVI GTATCC 1 cut(s) 973
BcnI CCSGG 2 cut(s) 927, 951
BcoDI GTCTC 4 cut(s) 382, 430, 1406, 1584
BfmI CTRYAG 1 cut(s) 688
BfoI RGCGCY 3 cut(s) 101, 696, 753
BfuAI ACCTGC 1 cut(s) 992
BfuI GTATCC 1 cut(s) 973
BglI GCCNNNNNGGC 1 cut(s) 795
Bme1390I CCNGG 4 cut(s) 72, 653, 927, 951
Bme18I GGWCC 4 cut(s) 170, 590, 1723, 2186
BmeRI GACNNNNNGTC 1 cut(s) 1597
BmeT110I CYCGRG 1 cut(s) 2030
BmgT120I GGNCC 4 cut(s) 170, 590, 1723, 2186
BmiI GGNNCC 4 cut(s) 1422, 1456, 1725, 1997
BmrFI CCNGG 4 cut(s) 72, 653, 927, 951
BmsI GCATC 5 cut(s) 156, 689, 908, 1869, 2144
BmtI GCTAGC 1 cut(s) 576
BplI GAGNNNNNCTC 2 cut(s) 532, 564
BpmI CTGGAG 1 cut(s) 281
BpuEI CTTGAG 3 cut(s) 76, 1184, 1899
BpuMI CCSGG 2 cut(s) 927, 951
BsaBI GATNNNNATC 1 cut(s) 858
BsaJI CCNNGG 3 cut(s) 1234, 1249, 1527
BsaWI WCCGGW 1 cut(s) 362
Bsc4I CCNNNNNNNGG 3 cut(s) 451, 1650, 1753
Bse118I RCCGGY 1 cut(s) 287
Bse1I ACTGG 7 cut(s) 264, 445, 610, 732, 1068, 1738, 2152
Bse3DI GCAATG 1 cut(s) 2129
Bse8I GATNNNNATC 1 cut(s) 858
BseBI CCWGG 2 cut(s) 72, 653
BseDI CCNNGG 3 cut(s) 1234, 1249, 1527
BseGI GGATG 3 cut(s) 147, 1891, 2134
BseJI GATNNNNATC 1 cut(s) 858
BseLI CCNNNNNNNGG 3 cut(s) 451, 1650, 1753
BseMI GCAATG 1 cut(s) 2129
BseMII CTCAG 3 cut(s) 398, 453, 571
BseNI ACTGG 7 cut(s) 264, 445, 610, 732, 1068, 1738, 2152
BsePI GCGCGC 1 cut(s) 291
BseRI GAGGAG 1 cut(s) 2087
Bsh1236I CGCG 1 cut(s) 293
BshFI GGCC 3 cut(s) 609, 925, 1248
BsiHKAI GWGCWC 5 cut(s) 62, 270, 440, 1546, 2031
BsiHKCI CYCGRG 1 cut(s) 2030
BsiSI CCGG 5 cut(s) 288, 363, 629, 926, 950
BslFI GGGAC 2 cut(s) 1666, 1720
BslI CCNNNNNNNGG 3 cut(s) 451, 1650, 1753
BsmAI GTCTC 4 cut(s) 382, 430, 1406, 1584
BsmFI GGGAC 2 cut(s) 1666, 1720
BsmI GAATGC 3 cut(s) 630, 809, 1103
BsnI GGCC 3 cut(s) 609, 925, 1248
BsoBI CYCGRG 1 cut(s) 2030
Bsp1286I GDGCHC 5 cut(s) 62, 270, 440, 1546, 2031
Bsp143I GATC 6 cut(s) 165, 355, 1454, 1661, 1832, 1888
BspACI CCGC 8 cut(s) 95, 135, 417, 459, 1295, 1849, 1999, 2189
BspANI GGCC 3 cut(s) 609, 925, 1248
BspCNI CTCAG 3 cut(s) 397, 452, 570
BspFNI CGCG 1 cut(s) 293
BspHI TCATGA 2 cut(s) 1474, 2083
BspLI GGNNCC 4 cut(s) 1422, 1456, 1725, 1997
BspMI ACCTGC 1 cut(s) 992
BspOI GCTAGC 1 cut(s) 576
BspPI GGATC 3 cut(s) 173, 1449, 1462
BsrBI CCGCTC 1 cut(s) 95
BsrDI GCAATG 1 cut(s) 2129
BsrFI RCCGGY 1 cut(s) 287
BsrI ACTGG 7 cut(s) 264, 445, 610, 732, 1068, 1738, 2152
BssAI RCCGGY 1 cut(s) 287
BssECI CCNNGG 3 cut(s) 1234, 1249, 1527
BssHII GCGCGC 1 cut(s) 291
BssMI GATC 6 cut(s) 165, 355, 1454, 1661, 1832, 1888
BssT1I CCWWGG 2 cut(s) 1234, 1249
Bst2UI CCWGG 2 cut(s) 72, 653
Bst4CI ACNGT 7 cut(s) 620, 1026, 1140, 1258, 1338, 2155, 2220
Bst6I CTCTTC 1 cut(s) 1828
BstAPI GCANNNNNTGC 2 cut(s) 936, 1640
BstC8I GCNNGC 6 cut(s) 289, 293, 347, 351, 574, 923
BstDEI CTNAG 4 cut(s) 384, 439, 557, 1948
BstDSI CCRYGG 1 cut(s) 1527
BstF5I GGATG 3 cut(s) 147, 1891, 2134
BstFNI CGCG 1 cut(s) 293
BstH2I RGCGCY 3 cut(s) 101, 696, 753
BstHHI GCGC 6 cut(s) 100, 293, 295, 695, 752, 1515
BstKTI GATC 6 cut(s) 168, 358, 1457, 1664, 1835, 1891
BstMAI GTCTC 4 cut(s) 382, 430, 1406, 1584
BstMBI GATC 6 cut(s) 165, 355, 1454, 1661, 1832, 1888
BstMWI GCNNNNNNNGC 7 cut(s) 795, 927, 936, 1245, 1640, 1964, 1998
BstNI CCWGG 2 cut(s) 72, 653
BstSCI CCNGG 4 cut(s) 70, 651, 925, 949
BstSFI CTRYAG 1 cut(s) 688
BstUI CGCG 1 cut(s) 293
BstX2I RGATCY 1 cut(s) 1454
BstXI CCANNNNNNTGG 1 cut(s) 1503
BstYI RGATCY 1 cut(s) 1454
BsuI GTATCC 1 cut(s) 973
BsuRI GGCC 3 cut(s) 609, 925, 1248
BtgI CCRYGG 1 cut(s) 1527
BtgZI GCGATG 1 cut(s) 2187
BtsCI GGATG 3 cut(s) 147, 1891, 2134
BtsI GCAGTG 2 cut(s) 567, 643
BtsIMutI CAGTG 5 cut(s) 567, 643, 725, 1206, 2216
BveI ACCTGC 1 cut(s) 992
Cac8I GCNNGC 6 cut(s) 289, 293, 347, 351, 574, 923
CciI TCATGA 2 cut(s) 1474, 2083
CfoI GCGC 6 cut(s) 100, 293, 295, 695, 752, 1515
Cfr10I RCCGGY 1 cut(s) 287
Cfr13I GGNCC 4 cut(s) 170, 590, 1723, 2186
CseI GACGC 1 cut(s) 1919
Csp6I GTAC 5 cut(s) 379, 522, 909, 1055, 1254
CspCI CAANNNNNGTGG 2 cut(s) 1516, 1551
CviAII CATG 8 cut(s) 601, 713, 1047, 1220, 1475, 1503, 1559, 2084
CviQI GTAC 5 cut(s) 379, 522, 909, 1055, 1254
DdeI CTNAG 4 cut(s) 384, 439, 557, 1948
DpnI GATC 6 cut(s) 167, 357, 1456, 1663, 1834, 1890
DpnII GATC 6 cut(s) 165, 355, 1454, 1661, 1832, 1888
DriI GACNNNNNGTC 1 cut(s) 1597
EaeI YGGCCR 3 cut(s) 607, 923, 1246
Eam1104I CTCTTC 1 cut(s) 1828
Eam1105I GACNNNNNGTC 1 cut(s) 1597
EarI CTCTTC 1 cut(s) 1828
EciI GGCGGA 2 cut(s) 1864, 2178
Ecl136II GAGCTC 3 cut(s) 438, 1544, 2029
Eco130I CCWWGG 2 cut(s) 1234, 1249
Eco24I GRGCYC 3 cut(s) 440, 1546, 2031
Eco32I GATATC 1 cut(s) 1945
Eco47I GGWCC 4 cut(s) 170, 590, 1723, 2186
Eco53kI GAGCTC 3 cut(s) 438, 1544, 2029
Eco57I CTGAAG 1 cut(s) 281
Eco88I CYCGRG 1 cut(s) 2030
EcoICRI GAGCTC 3 cut(s) 438, 1544, 2029
EcoRII CCWGG 2 cut(s) 70, 651
EcoRV GATATC 1 cut(s) 1945
EcoT14I CCWWGG 2 cut(s) 1234, 1249
EcoT38I GRGCYC 3 cut(s) 440, 1546, 2031
ErhI CCWWGG 2 cut(s) 1234, 1249
FaeI CATG 8 cut(s) 604, 716, 1050, 1223, 1478, 1506, 1562, 2087
FalI AAGNNNNNCTT 6 cut(s) 227, 259, 1146, 1178, 1314, 1346
FaqI GGGAC 2 cut(s) 1666, 1720
FatI CATG 8 cut(s) 600, 712, 1046, 1219, 1474, 1502, 1558, 2083
FauI CCCGC 1 cut(s) 452
FauNDI CATATG 2 cut(s) 21, 705
FblI GTMKAC 5 cut(s) 224, 1260, 1307, 1601, 1908
FokI GGATG 3 cut(s) 134, 1898, 2141
FriOI GRGCYC 3 cut(s) 440, 1546, 2031
FspI TGCGCA 1 cut(s) 1514
GlaI GCGC 6 cut(s) 99, 292, 294, 694, 751, 1514
GsuI CTGGAG 1 cut(s) 281
HaeII RGCGCY 3 cut(s) 101, 696, 753
HaeIII GGCC 3 cut(s) 609, 925, 1248
HapII CCGG 5 cut(s) 288, 363, 629, 926, 950
HgaI GACGC 1 cut(s) 1919
HhaI GCGC 6 cut(s) 100, 293, 295, 695, 752, 1515
Hin1II CATG 8 cut(s) 604, 716, 1050, 1223, 1478, 1506, 1562, 2087
Hin6I GCGC 6 cut(s) 98, 291, 293, 693, 750, 1513
HinP1I GCGC 6 cut(s) 98, 291, 293, 693, 750, 1513
HincII GTYRAC 2 cut(s) 1159, 1602
HindII GTYRAC 2 cut(s) 1159, 1602
HindIII AAGCTT 1 cut(s) 248
HinfI GANTC 9 cut(s) 86, 399, 1230, 1287, 1573, 1852, 1981, 2038, 2111
HpaI GTTAAC 1 cut(s) 1159
HpaII CCGG 5 cut(s) 288, 363, 629, 926, 950
HphI GGTGA 4 cut(s) 313, 445, 1078, 1163
Hpy188I TCNGA 9 cut(s) 170, 360, 387, 442, 505, 560, 1088, 1986, 2043
Hpy188III TCNNGA 8 cut(s) 55, 90, 244, 884, 1475, 1659, 1935, 2084
Hpy99I CGWCG 2 cut(s) 197, 763
HpyAV CCTTC 5 cut(s) 581, 956, 1087, 1838, 2202
HpyCH4III ACNGT 7 cut(s) 620, 1026, 1140, 1258, 1338, 2155, 2220
HpyCH4IV ACGT 2 cut(s) 317, 330
HpyF10VI GCNNNNNNNGC 7 cut(s) 795, 927, 936, 1245, 1640, 1964, 1998
HpyF3I CTNAG 4 cut(s) 384, 439, 557, 1948
HpySE526I ACGT 2 cut(s) 317, 330
Hsp92II CATG 8 cut(s) 604, 716, 1050, 1223, 1478, 1506, 1562, 2087
HspAI GCGC 6 cut(s) 98, 291, 293, 693, 750, 1513
KroI GCCGGC 1 cut(s) 287
KroNI GCCGGC 1 cut(s) 289
KspAI GTTAAC 1 cut(s) 1159
Kzo9I GATC 6 cut(s) 165, 355, 1454, 1661, 1832, 1888
LmnI GCTCC 3 cut(s) 714, 1541, 2074
LweI GCATC 5 cut(s) 156, 689, 908, 1869, 2144
MaeII ACGT 2 cut(s) 317, 330
MaeIII GTNAC 8 cut(s) 185, 313, 565, 638, 1715, 2017, 2046, 2155
MalI GATC 6 cut(s) 167, 357, 1456, 1663, 1834, 1890
MbiI CCGCTC 1 cut(s) 95
MboI GATC 6 cut(s) 165, 355, 1454, 1661, 1832, 1888
MboII GAAGA 9 cut(s) 313, 860, 1081, 1296, 1815, 1853, 1952, 1983, 2099
MfeI CAATTG 1 cut(s) 2115
MflI RGATCY 1 cut(s) 1454
MhlI GDGCHC 5 cut(s) 62, 270, 440, 1546, 2031
MlsI TGGCCA 1 cut(s) 1248
MluNI TGGCCA 1 cut(s) 1248
MlyI GAGTC 1 cut(s) 1861
MmeI TCCRAC 1 cut(s) 1176
Mox20I TGGCCA 1 cut(s) 1248
MroNI GCCGGC 1 cut(s) 287
MscI TGGCCA 1 cut(s) 1248
MseI TTAA 3 cut(s) 1130, 1158, 1389
MslI CAYNNNNRTG 4 cut(s) 581, 730, 1380, 1501
Msp20I TGGCCA 1 cut(s) 1248
MspA1I CMGCKG 1 cut(s) 837
MspI CCGG 5 cut(s) 288, 363, 629, 926, 950
MspR9I CCNGG 4 cut(s) 72, 653, 927, 951
MunI CAATTG 1 cut(s) 2115
Mva1269I GAATGC 3 cut(s) 630, 809, 1103
MvaI CCWGG 2 cut(s) 72, 653
MvnI CGCG 1 cut(s) 293
MwoI GCNNNNNNNGC 7 cut(s) 795, 927, 936, 1245, 1640, 1964, 1998
NaeI GCCGGC 1 cut(s) 289
NciI CCSGG 2 cut(s) 927, 951
NdeI CATATG 2 cut(s) 21, 705
NdeII GATC 6 cut(s) 165, 355, 1454, 1661, 1832, 1888
NgoMIV GCCGGC 1 cut(s) 287
NheI GCTAGC 1 cut(s) 572
NlaIII CATG 8 cut(s) 604, 716, 1050, 1223, 1478, 1506, 1562, 2087
NlaIV GGNNCC 4 cut(s) 1422, 1456, 1725, 1997
NmeAIII GCCGAG 1 cut(s) 141
NmuCI GTSAC 3 cut(s) 565, 638, 2046
NsbI TGCGCA 1 cut(s) 1514
PaeR7I CTCGAG 1 cut(s) 2030
PagI TCATGA 2 cut(s) 1474, 2083
PauI GCGCGC 1 cut(s) 291
PcsI WCGNNNNNNNCGW 1 cut(s) 764
PctI GAATGC 3 cut(s) 630, 809, 1103
PdiI GCCGGC 1 cut(s) 289
PfeI GAWTC 8 cut(s) 86, 399, 1230, 1287, 1573, 1981, 2038, 2111
PflMI CCANNNNNTGG 1 cut(s) 451
PleI GAGTC 1 cut(s) 1860
PpsI GAGTC 1 cut(s) 1860
PsiI TTATAA 1 cut(s) 1343
Psp124BI GAGCTC 3 cut(s) 440, 1546, 2031
Psp1406I AACGTT 1 cut(s) 317
Psp6I CCWGG 2 cut(s) 70, 651
PspGI CCWGG 2 cut(s) 70, 651
PspN4I GGNNCC 4 cut(s) 1422, 1456, 1725, 1997
PspPI GGNCC 4 cut(s) 170, 590, 1723, 2186
PspXI VCTCGAGB 1 cut(s) 2030
PsuI RGATCY 1 cut(s) 1454
PteI GCGCGC 1 cut(s) 291
PvuII CAGCTG 1 cut(s) 837
RsaI GTAC 5 cut(s) 380, 523, 910, 1056, 1255
RsaNI GTAC 5 cut(s) 379, 522, 909, 1055, 1254
RseI CAYNNNNRTG 4 cut(s) 581, 730, 1380, 1501
SacI GAGCTC 3 cut(s) 440, 1546, 2031
SalI GTCGAC 1 cut(s) 1600
SaqAI TTAA 3 cut(s) 1130, 1158, 1389
Sau3AI GATC 6 cut(s) 165, 355, 1454, 1661, 1832, 1888
Sau96I GGNCC 4 cut(s) 170, 590, 1723, 2186
SchI GAGTC 1 cut(s) 1861
ScrFI CCNGG 4 cut(s) 72, 653, 927, 951
SduI GDGCHC 5 cut(s) 62, 270, 440, 1546, 2031
SfaNI GCATC 5 cut(s) 156, 689, 908, 1869, 2144
SfcI CTRYAG 1 cut(s) 688
Sfr274I CTCGAG 1 cut(s) 2030
SinI GGWCC 4 cut(s) 170, 590, 1723, 2186
SlaI CTCGAG 1 cut(s) 2030
SmiMI CAYNNNNRTG 4 cut(s) 581, 730, 1380, 1501
SmlI CTYRAG 4 cut(s) 55, 1163, 1914, 2030
SmoI CTYRAG 4 cut(s) 55, 1163, 1914, 2030
SsiI CCGC 8 cut(s) 95, 135, 417, 459, 1295, 1849, 1999, 2189
SstI GAGCTC 3 cut(s) 440, 1546, 2031
StyD4I CCNGG 4 cut(s) 70, 651, 925, 949
StyI CCWWGG 2 cut(s) 1234, 1249
TaaI ACNGT 7 cut(s) 620, 1026, 1140, 1258, 1338, 2155, 2220
TaiI ACGT 2 cut(s) 320, 333
TaqI TCGA 8 cut(s) 192, 772, 1571, 1601, 1742, 1826, 1891, 2031
TaqII GACCGA 1 cut(s) 607
TatI WGTACW 1 cut(s) 378
TauI GCSGC 2 cut(s) 98, 420
TfiI GAWTC 8 cut(s) 86, 399, 1230, 1287, 1573, 1981, 2038, 2111
Tru1I TTAA 3 cut(s) 1130, 1158, 1389
Tru9I TTAA 3 cut(s) 1130, 1158, 1389
TscAI CASTG 5 cut(s) 574, 643, 732, 1213, 2223
TseFI GTSAC 3 cut(s) 565, 638, 2046
Tsp45I GTSAC 3 cut(s) 565, 638, 2046
TspDTI ATGAA 7 cut(s) 5, 1208, 1463, 1635, 1858, 2100, 2184
TspGWI ACGGA 4 cut(s) 540, 1105, 1544, 1769
TspRI CASTG 5 cut(s) 574, 643, 732, 1213, 2223
Van91I CCANNNNNTGG 1 cut(s) 451
VpaK11BI GGWCC 4 cut(s) 170, 590, 1723, 2186
XbaI TCTAGA 3 cut(s) 89, 1658, 1934
XcmI CCANNNNNNNNNTGG 1 cut(s) 452
XhoI CTCGAG 1 cut(s) 2030
XmiI GTMKAC 5 cut(s) 224, 1260, 1307, 1601, 1908
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.