Rh3AG334400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000052
Physical Location & Seq
Reverse (-)
48449184 .. 48449408
225 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG334400.1

Sequence Viewer

Length: 225 bp
ATGGATAAGAGGTGTGATGCTTTCTCGCCTTTACTGAGGCCAGGGTACAAAAACTTGCCAGACTCGATGTCGACCTCGTTGAGCTTGCTGGTGGCGCCGGTTGTGCTCACCTCCGCGTATGACGATGGTGAATCCTATAACGACGGTATGTCCCAAGGCTTCCTGATGATCTCGCCCTCGATTTGGAGTCATATTCACAGGAGTTGGAGATCTGAAGAGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

74

Amino Acids

8.28

Weight (kDa)

5.03

Isoelectric Point (pI)

92.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000052)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16090 AT1G16110 AT1G16120 AT1G16130 AT1G16150 AT1G16160 AT1G16260 AT1G16260 AT1G16260 AT1G79670 AT1G79670
fragaria_vesca FvH4_1g22960 FvH4_3g09860 FvH4_3g10284 FvH4_3g10284 FvH4_3g10540 FvH4_3g24040 FvH4_3g35290 FvH4_3g35290 FvH4_5g06860 FvH4_5g06940 FvH4_6g15920 FvH4_6g15920 FvH4_6g37660 FvH4_6g37670 FvH4_6g37691 FvH4_6g37700 FvH4_6g37710 FvH4_6g38990 FvH4_6g39000 FvH4_6g39020 FvH4_6g39020 FvH4_6g39020 FvH4_6g39021 FvH4_6g39030 FvH4_6g39030 FvH4_6g39031 FvH4_6g39032 FvH4_6g45200 FvH4_6g45200
malus_domestica MD08G1107900.v1.1 MD09G1145100.v1.1 MD09G1145200.v1.1 MD09G1145300.v1.1 MD09G1145400.v1.1 MD09G1145500.v1.1 MD17G1131600.v1.1 MD17G1131700.v1.1 MD17G1131900.v1.1 MD17G1132000.v1.1
prunus_persica Prupe.1G188400_v2.0.a1 Prupe.1G188700_v2.0.a1 Prupe.3G180500_v2.0.a1 Prupe.3G180600_v2.0.a1 Prupe.3G180700_v2.0.a1 Prupe.3G181000_v2.0.a1 Prupe.3G181100_v2.0.a1 Prupe.3G181100_v2.0.a1 Prupe.3G181200_v2.0.a1 Prupe.3G181200_v2.0.a1 Prupe.3G181400_v2.0.a1 Prupe.3G181500_v2.0.a1 Prupe.3G181600_v2.0.a1 Prupe.3G181800_v2.0.a1 Prupe.3G181900_v2.0.a1 Prupe.3G182000_v2.0.a1 Prupe.3G182100_v2.0.a1 Prupe.3G182200_v2.0.a1 Prupe.3G182300_v2.0.a1 Prupe.3G182400_v2.0.a1 Prupe.3G182500_v2.0.a1 Prupe.3G182600_v2.0.a1 Prupe.3G182700_v2.0.a1 Prupe.5G051200_v2.0.a1 Prupe.5G051300_v2.0.a1 Prupe.5G051400_v2.0.a1 Prupe.5G051500_v2.0.a1 Prupe.5G051600_v2.0.a1 Prupe.5G051600_v2.0.a1 Prupe.5G051800_v2.0.a1
pyrus_communis pycom09g06470 pycom09g06490 pycom09g06510 pycom09g06520 pycom09g06570 pycom09g06580 pycom17g12440 pycom17g12450 pycom17g12530
rosa_chinensis RchiOBHm_Chr2g0117481 RchiOBHm_Chr2g0128321 RchiOBHm_Chr2g0128331 RchiOBHm_Chr2g0128581 RchiOBHm_Chr2g0128591 RchiOBHm_Chr2g0150651 RchiOBHm_Chr2g0150661 RchiOBHm_Chr2g0150741 RchiOBHm_Chr2g0150781 RchiOBHm_Chr2g0152581 RchiOBHm_Chr2g0152591 RchiOBHm_Chr2g0152641 RchiOBHm_Chr2g0152661 RchiOBHm_Chr2g0152711 RchiOBHm_Chr2g0152731 RchiOBHm_Chr2g0152871 RchiOBHm_Chr2g0152881 RchiOBHm_Chr2g0152901 RchiOBHm_Chr2g0152921 RchiOBHm_Chr2g0152931 RchiOBHm_Chr2g0152941 RchiOBHm_Chr3g0469621 RchiOBHm_Chr3g0469631 RchiOBHm_Chr5g0015591 RchiOBHm_Chr5g0046061 RchiOBHm_Chr5g0047341 RchiOBHm_Chr5g0063341 RchiOBHm_Chr5g0063351 RchiOBHm_Chr6g0264381 RchiOBHm_Chr7g0191741 RchiOBHm_Chr7g0210751 RchiOBHm_Chr7g0221871 RchiOBHm_Chr7g0225671 RchiOBHm_Chr7g0225891 RchiOBHm_Chr7g0225901 RchiOBHm_Chr7g0225961 RchiOBHm_Chr7g0225971 RchiOBHm_Chr7g0234031 RchiOBHm_Chr7g0234041
rosa_laevigata RLG00000001780 RLG00000001784 RLG00000001785 RLG00000001788 RLG00000001789 RLG00000001793 RLG00000001794 RLG00000002941 RLG00000004430 RLG00000014259 RLG00000018349 RLG00000019001 RLG00000019005 RLG00000019011 RLG00000020503 RLG00000020507 RLG00000020648 RLG00000020649 RLG00000020651 RLG00000020652 RLG00000020653 RLG00000020655 RLG00000020656 RLG00000020657 RLG00000023668 RLG00000024331 RLG00000034386 RLG00000035624 RLG00000035625
rosa_multiflora Rmu_co8401977.1_g000001 Rmu_co8409989.1_g000001 Rmu_co8432067.1_g000001 Rmu_co8491011.1_g000001 Rmu_sc0000580.1_g000085 Rmu_sc0000740.1_g000012 Rmu_sc0000740.1_g000014 Rmu_sc0000837.1_g000041 Rmu_sc0000837.1_g000077 Rmu_sc0001552.1_g000008 Rmu_sc0001617.1_g000001 Rmu_sc0002082.1_g000006 Rmu_sc0002082.1_g000007 Rmu_sc0002082.1_g000022 Rmu_sc0002989.1_g000013 Rmu_sc0003064.1_g000011 Rmu_sc0003127.1_g000003 Rmu_sc0003127.1_g000014 Rmu_sc0003127.1_g000028 Rmu_sc0003127.1_g000032 Rmu_sc0003127.1_g000034 Rmu_sc0003127.1_g000035 Rmu_sc0003127.1_g000054 Rmu_sc0003127.1_g000055 Rmu_sc0003465.1_g000034 Rmu_sc0005223.1_g000021 Rmu_sc0005302.1_g000004 Rmu_sc0005378.1_g000005 Rmu_sc0005378.1_g000007 Rmu_sc0005378.1_g000017 Rmu_sc0005378.1_g000034 Rmu_sc0005378.1_g000039 Rmu_sc0005378.1_g000042 Rmu_sc0005378.1_g000056 Rmu_sc0005378.1_g000057 Rmu_sc0005378.1_g000058 Rmu_sc0006483.1_g000013 Rmu_sc0008775.1_g000006 Rmu_sc0008775.1_g000011 Rmu_sc0009104.1_g000010 Rmu_sc0009104.1_g000011 Rmu_sc0009104.1_g000020 Rmu_sc0010960.1_g000006 Rmu_sc0011737.1_g000002 Rmu_sc0011737.1_g000004 Rmu_sc0012875.1_g000003 Rmu_sc0013122.1_g000002 Rmu_sc0018944.1_g000002 Rmu_sc0020155.1_g000001 Rmu_sc0020156.1_g000001 Rmu_ssc0000233.1_g000012 Rmu_ssc0000233.1_g000013 Rmu_ssc0000233.1_g000030 Rmu_ssc0000233.1_g000044 Rmu_ssc0000233.1_g000047 Rmu_ssc0000233.1_g000052 Rmu_ssc0000233.1_g000054 Rmu_ssc0000233.1_g000055 Rmu_ssc0000233.1_g000080 Rmu_ssc0000233.1_g000082 Rmu_ssc0000233.1_g000087 Rmu_ssc0000233.1_g000094 Rmu_ssc0000480.1_g000060 Rmu_ssc0000480.1_g000061
rosa_roxburghii Rroxscaffold_1G00017360 Rroxscaffold_1G00017370 Rroxscaffold_1G00060880 Rroxscaffold_2G00095370 Rroxscaffold_2G00095420 Rroxscaffold_2G00095450 Rroxscaffold_2G00095460 Rroxscaffold_2G00095490 Rroxscaffold_2G00095560 Rroxscaffold_2G00095570 Rroxscaffold_2G00096960 Rroxscaffold_2G00097010 Rroxscaffold_2G00126500 Rroxscaffold_3G00233390 Rroxscaffold_3G00233580 Rroxscaffold_3G00263590 Rroxscaffold_6G00411660
rosa_rugosa Rorug01G0142700.1 Rorug01G0148600.1 Rorug02G0212800 Rorug02G0422400 Rorug02G0434700 Rorug02G0434800 Rorug02G0435000 Rorug02G0435200 Rorug02G0435300 Rorug02G0435400 Rorug02G0435700 Rorug02G0435800 Rorug02G0436200 Rorug02G0436300 Rorug03G0102800 Rorug04G0123600 Rorug04G0123700 Rorug04G0123800 Rorug04G0124000 Rorug04G0124000 Rorug04G0124500 Rorug04G0124700 Rorug04G0124900 Rorug05G0028600.1 Rorug05G0356100 Rorug05G0356800 Rorug06G0011900 Rorug07G0092900 Rorug07G0122800 Rorug07G0232500 Rorug07G0232600 Rorug07G0232700
rosa_samantha Rh1AG408900 Rh2AG332700 Rh2AG333400 Rh2AG482100 Rh2AG482200 Rh2AG482500 Rh2AG496000 Rh2AG496100 Rh2AG496200 Rh2AG496300 Rh2AG497100 Rh2AG497200 Rh2AG497400 Rh2BG280300 Rh2BG340500 Rh2BG494400 Rh2BG494900 Rh2BG507800 Rh2BG507900 Rh2BG508000 Rh2BG508100 Rh2BG508300 Rh2BG508500 Rh2BG508700 Rh2BG509200 Rh2BG512700 Rh2CG271900 Rh2CG319100 Rh2CG319400 Rh2CG357200 Rh2CG468400 Rh2CG468500 Rh2CG468800 Rh2CG482200 Rh2CG482300 Rh2CG482400 Rh2CG482500 Rh2CG483200 Rh2CG483300 Rh2CG483500 Rh2CG483600 Rh2DG294600 Rh2DG357100 Rh2DG357700 Rh2DG503400 Rh2DG504300 Rh2DG504900 Rh2DG505500 Rh2DG505900 Rh2DG519000 Rh2DG519100 Rh2DG519300 Rh2DG519400 Rh2DG520000 Rh2DG520200 Rh2DG520500 Rh2DG521000 Rh2DG524300 Rh3AG152400 Rh3AG334400 Rh3BG176100 Rh3CG167200 Rh3DG199400 Rh3DG199500 Rh5AG415900 Rh5BG430800 Rh5CG454300 Rh5DG444600 Rh6AG247500 Rh6AG247700 Rh7AG120600 Rh7AG369800 Rh7AG370800 Rh7AG468300 Rh7BG366400 Rh7CG125200 Rh7CG388700 Rh7CG389400 Rh7CG459600 Rh7DG123300 Rh7DG123400 Rh7DG123800 Rh7DG123900 Rh7DG377200
rosa_wichuraiana Rw0G004850 Rw0G004870 Rw0G013120 Rw1G013520 Rw2G026850 Rw2G026910 Rw2G027120 Rw2G039340 Rw2G039360 Rw2G039410 Rw2G039420 Rw2G039440 Rw2G039520 Rw2G040810 Rw2G040830 Rw2G040850 Rw2G040860 Rw2G040880 Rw2G041210 Rw2G041220 Rw2G041240 Rw2G041250 Rw3G014370 Rw5G010520 Rw5G039070 Rw6G021410 Rw6G021420 Rw7G010280 Rw7G021780 Rw7G031820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 94
AccI GTMKAC 1 cut(s) 71
AccII CGCG 1 cut(s) 116
AciI CCGC 1 cut(s) 114
AcyI GRCGYC 1 cut(s) 95
AfaI GTAC 1 cut(s) 47
AfiI CCNNNNNNNGG 1 cut(s) 183
AhdI GACNNNNNGTC 2 cut(s) 67, 148
AjnI CCWGG 1 cut(s) 40
AluBI AGCT 1 cut(s) 84
AluI AGCT 1 cut(s) 84
Alw21I GWGCWC 1 cut(s) 108
AoxI GGCC 1 cut(s) 38
AspLEI GCGC 1 cut(s) 97
AsuHPI GGTGA 2 cut(s) 100, 140
BanI GGYRCC 1 cut(s) 94
Bbv12I GWGCWC 1 cut(s) 108
BccI CCATC 1 cut(s) 119
BciT130I CCWGG 1 cut(s) 42
BfoI RGCGCY 1 cut(s) 98
BglII AGATCT 1 cut(s) 209
Bme1390I CCNGG 1 cut(s) 42
BmeRI GACNNNNNGTC 2 cut(s) 67, 148
BmiI GGNNCC 1 cut(s) 96
BmrFI CCNGG 1 cut(s) 42
BmsI GCATC 1 cut(s) 7
BsaHI GRCGYC 1 cut(s) 95
BsaJI CCNNGG 2 cut(s) 41, 154
Bsc4I CCNNNNNNNGG 1 cut(s) 183
Bse118I RCCGGY 1 cut(s) 97
BseBI CCWGG 1 cut(s) 42
BseDI CCNNGG 2 cut(s) 41, 154
BseLI CCNNNNNNNGG 1 cut(s) 183
BseMII CTCAG 1 cut(s) 26
Bsh1236I CGCG 1 cut(s) 116
BshFI GGCC 1 cut(s) 40
BshNI GGYRCC 1 cut(s) 94
BsiHKAI GWGCWC 1 cut(s) 108
BsiSI CCGG 1 cut(s) 98
BslFI GGGAC 1 cut(s) 136
BslI CCNNNNNNNGG 1 cut(s) 183
BsmFI GGGAC 1 cut(s) 136
BsnI GGCC 1 cut(s) 40
Bsp1286I GDGCHC 1 cut(s) 108
Bsp143I GATC 2 cut(s) 168, 209
BspACI CCGC 1 cut(s) 114
BspANI GGCC 1 cut(s) 40
BspCNI CTCAG 1 cut(s) 27
BspFNI CGCG 1 cut(s) 116
BspLI GGNNCC 1 cut(s) 96
BspT107I GGYRCC 1 cut(s) 94
BsrFI RCCGGY 1 cut(s) 97
BssAI RCCGGY 1 cut(s) 97
BssECI CCNNGG 2 cut(s) 41, 154
BssMI GATC 2 cut(s) 168, 209
BssNI GRCGYC 1 cut(s) 95
BssT1I CCWWGG 1 cut(s) 154
Bst2UI CCWGG 1 cut(s) 42
Bst4CI ACNGT 1 cut(s) 146
Bst6I CTCTTC 1 cut(s) 210
BstACI GRCGYC 1 cut(s) 95
BstC8I GCNNGC 1 cut(s) 86
BstDEI CTNAG 1 cut(s) 35
BstFNI CGCG 1 cut(s) 116
BstH2I RGCGCY 1 cut(s) 98
BstHHI GCGC 1 cut(s) 97
BstKTI GATC 2 cut(s) 171, 212
BstMBI GATC 2 cut(s) 168, 209
BstMWI GCNNNNNNNGC 2 cut(s) 94, 103
BstNI CCWGG 1 cut(s) 42
BstSCI CCNGG 1 cut(s) 40
BstUI CGCG 1 cut(s) 116
BstX2I RGATCY 1 cut(s) 209
BstYI RGATCY 1 cut(s) 209
BsuRI GGCC 1 cut(s) 40
Cac8I GCNNGC 1 cut(s) 86
CfoI GCGC 1 cut(s) 97
Cfr10I RCCGGY 1 cut(s) 97
Csp6I GTAC 1 cut(s) 46
CviJI RGCY 3 cut(s) 40, 84, 159
CviKI_1 RGCY 3 cut(s) 40, 84, 159
CviQI GTAC 1 cut(s) 46
DdeI CTNAG 1 cut(s) 35
DinI GGCGCC 1 cut(s) 96
DpnI GATC 2 cut(s) 170, 211
DpnII GATC 2 cut(s) 168, 209
DriI GACNNNNNGTC 2 cut(s) 67, 148
Eam1104I CTCTTC 1 cut(s) 210
Eam1105I GACNNNNNGTC 2 cut(s) 67, 148
EarI CTCTTC 1 cut(s) 210
Eco130I CCWWGG 1 cut(s) 154
EcoRII CCWGG 1 cut(s) 40
EcoT14I CCWWGG 1 cut(s) 154
EgeI GGCGCC 1 cut(s) 96
EheI GGCGCC 1 cut(s) 96
ErhI CCWWGG 1 cut(s) 154
FaiI YATR 4 cut(s) 120, 138, 149, 192
FaqI GGGAC 1 cut(s) 136
FblI GTMKAC 1 cut(s) 71
GlaI GCGC 1 cut(s) 96
HaeII RGCGCY 1 cut(s) 98
HaeIII GGCC 1 cut(s) 40
HapII CCGG 1 cut(s) 98
HhaI GCGC 1 cut(s) 97
Hin1I GRCGYC 1 cut(s) 95
Hin6I GCGC 1 cut(s) 95
HinP1I GCGC 1 cut(s) 95
HincII GTYRAC 1 cut(s) 72
HindII GTYRAC 1 cut(s) 72
HinfI GANTC 4 cut(s) 62, 131, 187, 218
HpaII CCGG 1 cut(s) 98
HphI GGTGA 2 cut(s) 100, 140
Hpy166II GTNNAC 1 cut(s) 72
Hpy188I TCNGA 1 cut(s) 214
Hpy188III TCNNGA 1 cut(s) 163
Hpy8I GTNNAC 1 cut(s) 72
Hpy99I CGWCG 1 cut(s) 146
HpyCH4III ACNGT 1 cut(s) 146
HpyF10VI GCNNNNNNNGC 2 cut(s) 94, 103
HpyF3I CTNAG 1 cut(s) 35
Hsp92I GRCGYC 1 cut(s) 95
HspAI GCGC 1 cut(s) 95
KasI GGCGCC 1 cut(s) 94
Kzo9I GATC 2 cut(s) 168, 209
LpnPI CCDG 7 cut(s) 27, 54, 72, 74, 111, 176, 184
LweI GCATC 1 cut(s) 7
MalI GATC 2 cut(s) 170, 211
MboI GATC 2 cut(s) 168, 209
MflI RGATCY 1 cut(s) 209
MhlI GDGCHC 1 cut(s) 108
Mly113I GGCGCC 1 cut(s) 95
MlyI GAGTC 2 cut(s) 56, 196
MmeI TCCRAC 1 cut(s) 185
MnlI CCTC 5 cut(s) 3, 30, 85, 121, 187
MseI TTAA 1 cut(s) 223
MspI CCGG 1 cut(s) 98
MspR9I CCNGG 1 cut(s) 42
MvaI CCWGG 1 cut(s) 42
MvnI CGCG 1 cut(s) 116
MwoI GCNNNNNNNGC 2 cut(s) 94, 103
NarI GGCGCC 1 cut(s) 95
NdeII GATC 2 cut(s) 168, 209
NlaIV GGNNCC 1 cut(s) 96
PfeI GAWTC 1 cut(s) 131
PleI GAGTC 2 cut(s) 56, 195
PluTI GGCGCC 1 cut(s) 98
PpsI GAGTC 2 cut(s) 56, 195
Psp6I CCWGG 1 cut(s) 40
PspGI CCWGG 1 cut(s) 40
PspN4I GGNNCC 1 cut(s) 96
PsuI RGATCY 1 cut(s) 209
RsaI GTAC 1 cut(s) 47
RsaNI GTAC 1 cut(s) 46
SalI GTCGAC 1 cut(s) 70
SaqAI TTAA 1 cut(s) 223
Sau3AI GATC 2 cut(s) 168, 209
SchI GAGTC 2 cut(s) 56, 196
ScrFI CCNGG 1 cut(s) 42
SduI GDGCHC 1 cut(s) 108
SetI ASST 4 cut(s) 14, 77, 86, 113
SfaNI GCATC 1 cut(s) 7
SfoI GGCGCC 1 cut(s) 96
SsiI CCGC 1 cut(s) 114
SspDI GGCGCC 1 cut(s) 94
StyD4I CCNGG 1 cut(s) 40
StyI CCWWGG 1 cut(s) 154
TaaI ACNGT 1 cut(s) 146
TaqI TCGA 3 cut(s) 65, 71, 179
TfiI GAWTC 1 cut(s) 131
Tru1I TTAA 1 cut(s) 223
Tru9I TTAA 1 cut(s) 223
XmiI GTMKAC 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.