RchiOBHm_Chr5g0047341

Wall-associated receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000052
Physical Location & Seq
Reverse (-)
43748244 .. 43751180
2937 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32527

Sequence Viewer

Length: 2244 bp
ATGGCCTTGCAAGTCTCATTGGTGGCAGTCCTACTCCTGTTATTGGCATTATCGGCGGCTAGTACAACTACGACAAGAAAAGAGCCTACTCAGGCCCTCCCTGGCTGCCCTAACAAGTGCGGCAATCTCACAATTCCATATCCATTTGGCATGAAGAAGGATTGTTACTTGCGAGAAGAATTCTTTATCAATTGCAGTCATGCGACCCAACCACCAGTAGCATATTTGGGTAGAGGGAATCTCAAGGTTACTGACATTTCCGTTGATGACGGTGAGCTGCGGATATTGGGCTACGTAGCTAAAAAATGCTATAACGCCCTGCAGGGCCGCTATTTCACGTCCTTAGATGGAGAATTACATAGGATTTGGCTGGGTCTTCCTTATACGATCTCCCATTCCAAAAACAAGTTCTATGCCGTTGGTTGTGACGCTTCTGCAGTTGTAAAAGGCTTCCGAGGGGAAGAAGAGTTGATTACAGGGTGCATGTCCATATGCAACAGCTTTGGCAGCGTCGATAATCACTTTTGCTCCGGCGTTGGGTGTTGTGAGACTTACATCCCCAGCGGACTAAAGAATATGACGCTGAAGCTCAATAGCTACCAAAATAATTTGAGAATAATAGATTTTAACCCCTGCAGCTACGCCTTCATTGTGGAAGAAGGCCAGTTCAATTTCTCCCGTGCGAGTTTTAAAGATCTGAACAACACTATAGAACTTCCAATGGTTCTTAATTGGGCAGTTGGGAATGACACGGACCCCTGTGATGAAGCTCGAAAGAGGAAGGATTTCGCATGCAAGGCTAATAGCTTATGCGTCAACTGGGAGATGGCTATCAATGAGTCTGTAGGTTACTTATGCAAGTGCTCGCCTGGTTATGAAGGAAACCCTTACCACCCAGATGGTTGCCAAGATATTGATGAATGCAAGGCTTCAATTAGCCCCTGCAATCACGGAACGTGCATCAATTCACTAGGAAATTACTCCTGTTTGTGTCCCAAAGCGTACAAAAACAGAACAAATGCAAAAGGTTGCCTCAAATTGGAGATCAATCAACCTGCTAGGAAACTCTTTCTGATCACATTAGGTACTGGCAGCAGTTTTGGACTGATATTTCTAGCCATTGCTGCATGGTGGTTGGTCCAAGTCATAAAGAAAAGGGAAAACAAAATACGAAAGGAGAAGTTTTTTAAACAAAATGGTGGTTTAGTATTGGAGCAACAATTATCTTCTGGTGATCAAGCTAATGTTGAAAAAATCAAGTTGTTCAATTCAAGGGAGCTGGAGAAAGCCACGGACCACTTTAGCATAGATAGAATTCTTGGCCAGGGAGGCCAAGGTACTGTTTACAAAGGAATGTTGATGGGTGGACAAATTGTTGCTATCAAAAAGTCTAAAATGGTTAATGGAGGTGATCGTGAAGTGCGACAATTCATTAATGAAATTGTGATTCTTTCACAAATTAACCACAGAAATGTGGTTAAACTATTGGGTTGTTGTTTGGAAACCGAAATTCCCCTCTTGGTCTATGAATTTCTACCGAATGGAACACTTTCTCAGTACATTCATGACCAAGATGATGAGTTTCCTCTTACATGGGGAACGCGCGCGATTGCGACTTCTATTCCTATTTACCACCGGGACATCAAGTCCACGAACATACTCTTGGATGCCAAGTATAGAGCAAAAATTGCAGATTTTGGGACTTCAAGATCCATTTCCATTGACCAGACACATCTCACAACAGTAGTACATGGAACATTTGGTTATTTGGACCCAGAGTACTTTCAATCAAGCCAATTTACAGAAAAGAGTGATGTTTACAGCTTCGGTGTGGTCCTTGCTGAGCTCTTGACCGGACAAAAACCAGTTTCCATGACGAGGTCGAAAGAAAGTAGAAGCCTAGCAACTCATTTCCTTCTTTCCATGGAGCAGAATCGTTTGTTTGATATTCTTGACCCTCAAGTTATGAAAGATGGTATCAAAGAAGAAATTATAGCAGTTGCTTACCTTGCGCAAAAATGCATAGATTTGAATGGAAGGAAACGTCCTACTATGAAAGAAGTAGCGGCGGCATTGGAGGGAGTTCGATTGGCAGTCAAAGATGCTGATCATGTTCAACAAAATTTGGTAGAGAAAAGAGACGTCGGAACTCATGAAATAATCACCCAAGCTTATTGCGATATTGTTTCTACATCAGCCGGTCCTTTTACAGATAGTGGTACTGCAGGTTCTTCATCGATCTGA

Protein Analysis

747

Amino Acids

82.81

Weight (kDa)

7.65

Isoelectric Point (pI)

28.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 36 - 95 9.8e-11 Wall-associated receptor kinase galacturonan-binding
EGF_CA PF07645 304 - 344 1.4e-07 Calcium-binding EGF domain
Pkinase PF00069 435 - 689 4.4e-41 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 436 - 691 1.4e-39 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000052)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16090 AT1G16110 AT1G16120 AT1G16130 AT1G16150 AT1G16160 AT1G16260 AT1G16260 AT1G16260 AT1G79670 AT1G79670
fragaria_vesca FvH4_1g22960 FvH4_3g09860 FvH4_3g10284 FvH4_3g10284 FvH4_3g10540 FvH4_3g24040 FvH4_3g35290 FvH4_3g35290 FvH4_5g06860 FvH4_5g06940 FvH4_6g15920 FvH4_6g15920 FvH4_6g37660 FvH4_6g37670 FvH4_6g37691 FvH4_6g37700 FvH4_6g37710 FvH4_6g38990 FvH4_6g39000 FvH4_6g39020 FvH4_6g39020 FvH4_6g39020 FvH4_6g39021 FvH4_6g39030 FvH4_6g39030 FvH4_6g39031 FvH4_6g39032 FvH4_6g45200 FvH4_6g45200
malus_domestica MD08G1107900.v1.1 MD09G1145100.v1.1 MD09G1145200.v1.1 MD09G1145300.v1.1 MD09G1145400.v1.1 MD09G1145500.v1.1 MD17G1131600.v1.1 MD17G1131700.v1.1 MD17G1131900.v1.1 MD17G1132000.v1.1
prunus_persica Prupe.1G188400_v2.0.a1 Prupe.1G188700_v2.0.a1 Prupe.3G180500_v2.0.a1 Prupe.3G180600_v2.0.a1 Prupe.3G180700_v2.0.a1 Prupe.3G181000_v2.0.a1 Prupe.3G181100_v2.0.a1 Prupe.3G181100_v2.0.a1 Prupe.3G181200_v2.0.a1 Prupe.3G181200_v2.0.a1 Prupe.3G181400_v2.0.a1 Prupe.3G181500_v2.0.a1 Prupe.3G181600_v2.0.a1 Prupe.3G181800_v2.0.a1 Prupe.3G181900_v2.0.a1 Prupe.3G182000_v2.0.a1 Prupe.3G182100_v2.0.a1 Prupe.3G182200_v2.0.a1 Prupe.3G182300_v2.0.a1 Prupe.3G182400_v2.0.a1 Prupe.3G182500_v2.0.a1 Prupe.3G182600_v2.0.a1 Prupe.3G182700_v2.0.a1 Prupe.5G051200_v2.0.a1 Prupe.5G051300_v2.0.a1 Prupe.5G051400_v2.0.a1 Prupe.5G051500_v2.0.a1 Prupe.5G051600_v2.0.a1 Prupe.5G051600_v2.0.a1 Prupe.5G051800_v2.0.a1
pyrus_communis pycom09g06470 pycom09g06490 pycom09g06510 pycom09g06520 pycom09g06570 pycom09g06580 pycom17g12440 pycom17g12450 pycom17g12530
rosa_chinensis RchiOBHm_Chr2g0117481 RchiOBHm_Chr2g0128321 RchiOBHm_Chr2g0128331 RchiOBHm_Chr2g0128581 RchiOBHm_Chr2g0128591 RchiOBHm_Chr2g0150651 RchiOBHm_Chr2g0150661 RchiOBHm_Chr2g0150741 RchiOBHm_Chr2g0150781 RchiOBHm_Chr2g0152581 RchiOBHm_Chr2g0152591 RchiOBHm_Chr2g0152641 RchiOBHm_Chr2g0152661 RchiOBHm_Chr2g0152711 RchiOBHm_Chr2g0152731 RchiOBHm_Chr2g0152871 RchiOBHm_Chr2g0152881 RchiOBHm_Chr2g0152901 RchiOBHm_Chr2g0152921 RchiOBHm_Chr2g0152931 RchiOBHm_Chr2g0152941 RchiOBHm_Chr3g0469621 RchiOBHm_Chr3g0469631 RchiOBHm_Chr5g0015591 RchiOBHm_Chr5g0046061 RchiOBHm_Chr5g0047341 RchiOBHm_Chr5g0063341 RchiOBHm_Chr5g0063351 RchiOBHm_Chr6g0264381 RchiOBHm_Chr7g0191741 RchiOBHm_Chr7g0210751 RchiOBHm_Chr7g0221871 RchiOBHm_Chr7g0225671 RchiOBHm_Chr7g0225891 RchiOBHm_Chr7g0225901 RchiOBHm_Chr7g0225961 RchiOBHm_Chr7g0225971 RchiOBHm_Chr7g0234031 RchiOBHm_Chr7g0234041
rosa_laevigata RLG00000001780 RLG00000001784 RLG00000001785 RLG00000001788 RLG00000001789 RLG00000001793 RLG00000001794 RLG00000002941 RLG00000004430 RLG00000014259 RLG00000018349 RLG00000019001 RLG00000019005 RLG00000019011 RLG00000020503 RLG00000020507 RLG00000020648 RLG00000020649 RLG00000020651 RLG00000020652 RLG00000020653 RLG00000020655 RLG00000020656 RLG00000020657 RLG00000023668 RLG00000024331 RLG00000034386 RLG00000035624 RLG00000035625
rosa_multiflora Rmu_co8401977.1_g000001 Rmu_co8409989.1_g000001 Rmu_co8432067.1_g000001 Rmu_co8491011.1_g000001 Rmu_sc0000580.1_g000085 Rmu_sc0000740.1_g000012 Rmu_sc0000740.1_g000014 Rmu_sc0000837.1_g000041 Rmu_sc0000837.1_g000077 Rmu_sc0001552.1_g000008 Rmu_sc0001617.1_g000001 Rmu_sc0002082.1_g000006 Rmu_sc0002082.1_g000007 Rmu_sc0002082.1_g000022 Rmu_sc0002989.1_g000013 Rmu_sc0003064.1_g000011 Rmu_sc0003127.1_g000003 Rmu_sc0003127.1_g000014 Rmu_sc0003127.1_g000028 Rmu_sc0003127.1_g000032 Rmu_sc0003127.1_g000034 Rmu_sc0003127.1_g000035 Rmu_sc0003127.1_g000054 Rmu_sc0003127.1_g000055 Rmu_sc0003465.1_g000034 Rmu_sc0005223.1_g000021 Rmu_sc0005302.1_g000004 Rmu_sc0005378.1_g000005 Rmu_sc0005378.1_g000007 Rmu_sc0005378.1_g000017 Rmu_sc0005378.1_g000034 Rmu_sc0005378.1_g000039 Rmu_sc0005378.1_g000042 Rmu_sc0005378.1_g000056 Rmu_sc0005378.1_g000057 Rmu_sc0005378.1_g000058 Rmu_sc0006483.1_g000013 Rmu_sc0008775.1_g000006 Rmu_sc0008775.1_g000011 Rmu_sc0009104.1_g000010 Rmu_sc0009104.1_g000011 Rmu_sc0009104.1_g000020 Rmu_sc0010960.1_g000006 Rmu_sc0011737.1_g000002 Rmu_sc0011737.1_g000004 Rmu_sc0012875.1_g000003 Rmu_sc0013122.1_g000002 Rmu_sc0018944.1_g000002 Rmu_sc0020155.1_g000001 Rmu_sc0020156.1_g000001 Rmu_ssc0000233.1_g000012 Rmu_ssc0000233.1_g000013 Rmu_ssc0000233.1_g000030 Rmu_ssc0000233.1_g000044 Rmu_ssc0000233.1_g000047 Rmu_ssc0000233.1_g000052 Rmu_ssc0000233.1_g000054 Rmu_ssc0000233.1_g000055 Rmu_ssc0000233.1_g000080 Rmu_ssc0000233.1_g000082 Rmu_ssc0000233.1_g000087 Rmu_ssc0000233.1_g000094 Rmu_ssc0000480.1_g000060 Rmu_ssc0000480.1_g000061
rosa_roxburghii Rroxscaffold_1G00017360 Rroxscaffold_1G00017370 Rroxscaffold_1G00060880 Rroxscaffold_2G00095370 Rroxscaffold_2G00095420 Rroxscaffold_2G00095450 Rroxscaffold_2G00095460 Rroxscaffold_2G00095490 Rroxscaffold_2G00095560 Rroxscaffold_2G00095570 Rroxscaffold_2G00096960 Rroxscaffold_2G00097010 Rroxscaffold_2G00126500 Rroxscaffold_3G00233390 Rroxscaffold_3G00233580 Rroxscaffold_3G00263590 Rroxscaffold_6G00411660
rosa_rugosa Rorug01G0142700.1 Rorug01G0148600.1 Rorug02G0212800 Rorug02G0422400 Rorug02G0434700 Rorug02G0434800 Rorug02G0435000 Rorug02G0435200 Rorug02G0435300 Rorug02G0435400 Rorug02G0435700 Rorug02G0435800 Rorug02G0436200 Rorug02G0436300 Rorug03G0102800 Rorug04G0123600 Rorug04G0123700 Rorug04G0123800 Rorug04G0124000 Rorug04G0124000 Rorug04G0124500 Rorug04G0124700 Rorug04G0124900 Rorug05G0028600.1 Rorug05G0356100 Rorug05G0356800 Rorug06G0011900 Rorug07G0092900 Rorug07G0122800 Rorug07G0232500 Rorug07G0232600 Rorug07G0232700
rosa_samantha Rh1AG408900 Rh2AG332700 Rh2AG333400 Rh2AG482100 Rh2AG482200 Rh2AG482500 Rh2AG496000 Rh2AG496100 Rh2AG496200 Rh2AG496300 Rh2AG497100 Rh2AG497200 Rh2AG497400 Rh2BG280300 Rh2BG340500 Rh2BG494400 Rh2BG494900 Rh2BG507800 Rh2BG507900 Rh2BG508000 Rh2BG508100 Rh2BG508300 Rh2BG508500 Rh2BG508700 Rh2BG509200 Rh2BG512700 Rh2CG271900 Rh2CG319100 Rh2CG319400 Rh2CG357200 Rh2CG468400 Rh2CG468500 Rh2CG468800 Rh2CG482200 Rh2CG482300 Rh2CG482400 Rh2CG482500 Rh2CG483200 Rh2CG483300 Rh2CG483500 Rh2CG483600 Rh2DG294600 Rh2DG357100 Rh2DG357700 Rh2DG503400 Rh2DG504300 Rh2DG504900 Rh2DG505500 Rh2DG505900 Rh2DG519000 Rh2DG519100 Rh2DG519300 Rh2DG519400 Rh2DG520000 Rh2DG520200 Rh2DG520500 Rh2DG521000 Rh2DG524300 Rh3AG152400 Rh3AG334400 Rh3BG176100 Rh3CG167200 Rh3DG199400 Rh3DG199500 Rh5AG415900 Rh5BG430800 Rh5CG454300 Rh5DG444600 Rh6AG247500 Rh6AG247700 Rh7AG120600 Rh7AG369800 Rh7AG370800 Rh7AG468300 Rh7BG366400 Rh7CG125200 Rh7CG388700 Rh7CG389400 Rh7CG459600 Rh7DG123300 Rh7DG123400 Rh7DG123800 Rh7DG123900 Rh7DG377200
rosa_wichuraiana Rw0G004850 Rw0G004870 Rw0G013120 Rw1G013520 Rw2G026850 Rw2G026910 Rw2G027120 Rw2G039340 Rw2G039360 Rw2G039410 Rw2G039420 Rw2G039440 Rw2G039520 Rw2G040810 Rw2G040830 Rw2G040850 Rw2G040860 Rw2G040880 Rw2G041210 Rw2G041220 Rw2G041240 Rw2G041250 Rw3G014370 Rw5G010520 Rw5G039070 Rw6G021410 Rw6G021420 Rw7G010280 Rw7G021780 Rw7G031820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 2145
Acc16I TGCGCA 1 cut(s) 2013
Acc36I ACCTGC 2 cut(s) 1063, 2216
AccII CGCG 3 cut(s) 1603, 1605, 1607
AciI CCGC 7 cut(s) 56, 120, 280, 328, 564, 2066, 2069
AclWI GGATC 1 cut(s) 1704
AcoI YGGCCR 1 cut(s) 1321
AcsI RAATTY 5 cut(s) 179, 1314, 1509, 1529, 2122
AcuI CTGAAG 1 cut(s) 605
AcyI GRCGYC 1 cut(s) 2142
AfaI GTAC 8 cut(s) 64, 1004, 1087, 1339, 1559, 1749, 1781, 2221
AfiI CCNNNNNNNGG 4 cut(s) 43, 537, 1039, 1878
AgsI TTSAA 9 cut(s) 670, 933, 1250, 1267, 1272, 1707, 1787, 2032, 2117
AhdI GACNNNNNGTC 1 cut(s) 1645
AjiI CACGTC 1 cut(s) 339
AjnI CCWGG 3 cut(s) 100, 868, 1323
AjuI GAANNNNNNNTTGG 4 cut(s) 392, 424, 1646, 1678
Alw21I GWGCWC 2 cut(s) 866, 1848
Alw26I GTCTC 3 cut(s) 19, 542, 2133
AlwI GGATC 1 cut(s) 1704
AoxI GGCC 6 cut(s) 3, 93, 325, 661, 1321, 1330
ApeKI GCWGC 6 cut(s) 105, 277, 507, 636, 1092, 1124
ApoI RAATTY 5 cut(s) 179, 1314, 1509, 1529, 2122
AseI ATTAAT 1 cut(s) 1434
Asp700I GAANNNNTTC 2 cut(s) 785, 1549
AspLEI GCGC 3 cut(s) 1605, 1607, 2014
AspS9I GGNCC 8 cut(s) 94, 325, 754, 1138, 1294, 1771, 1834, 2201
AsuC2I CCSGG 1 cut(s) 1637
AsuHPI GGTGA 4 cut(s) 284, 1244, 1421, 2155
AvaII GGWCC 6 cut(s) 754, 1138, 1294, 1771, 1834, 2201
BalI TGGCCA 1 cut(s) 1323
BanII GRGCYC 1 cut(s) 1848
BarI GAAGNNNNNNTAC 2 cut(s) 149, 181
BbsI GAAGAC 1 cut(s) 368
Bbv12I GWGCWC 2 cut(s) 866, 1848
BbvI GCAGC 6 cut(s) 92, 264, 519, 648, 1104, 1111
BccI CCATC 5 cut(s) 341, 820, 893, 1354, 1967
BceAI ACGGC 1 cut(s) 401
BciT130I CCWGG 3 cut(s) 102, 870, 1325
BclI TGATCA 3 cut(s) 1074, 1234, 2107
BcnI CCSGG 1 cut(s) 1637
BcoDI GTCTC 3 cut(s) 19, 542, 2133
BfaI CTAG 5 cut(s) 60, 971, 1059, 1115, 1901
BfmI CTRYAG 6 cut(s) 320, 435, 634, 708, 843, 2223
BfuAI ACCTGC 2 cut(s) 1063, 2216
BglI GCCNNNNNGGC 1 cut(s) 1329
BglII AGATCT 1 cut(s) 694
BlpI GCTNAGC 1 cut(s) 1842
BmcAI AGTACT 1 cut(s) 1781
Bme1390I CCNGG 4 cut(s) 102, 870, 1325, 1637
Bme18I GGWCC 6 cut(s) 754, 1138, 1294, 1771, 1834, 2201
BmeRI GACNNNNNGTC 1 cut(s) 1645
BmgBI CACGTC 1 cut(s) 339
BmgT120I GGNCC 8 cut(s) 94, 325, 754, 1138, 1294, 1771, 1834, 2201
BmiI GGNNCC 2 cut(s) 756, 1773
BmrFI CCNGG 4 cut(s) 102, 870, 1325, 1637
BmrI ACTGGG 1 cut(s) 829
BmsI GCATC 3 cut(s) 969, 1657, 2092
BmuI ACTGGG 1 cut(s) 829
BpiI GAAGAC 1 cut(s) 368
BplI GAGNNNNNCTC 2 cut(s) 225, 257
BpmI CTGGAG 1 cut(s) 1301
Bpu1102I GCTNAGC 1 cut(s) 1842
BpuEI CTTGAG 2 cut(s) 227, 1944
BpuMI CCSGG 1 cut(s) 1637
Bsa29I ATCGAT 1 cut(s) 2237
BsaAI YACGTR 1 cut(s) 295
BsaBI GATNNNNATC 2 cut(s) 830, 2106
BsaHI GRCGYC 1 cut(s) 2142
BsaJI CCNNGG 6 cut(s) 100, 454, 1290, 1324, 1333, 1923
BsaWI WCCGGW 1 cut(s) 1853
BsaXI ACNNNNNCTCC 2 cut(s) 512, 542
Bsc4I CCNNNNNNNGG 4 cut(s) 43, 537, 1039, 1878
Bse118I RCCGGY 1 cut(s) 2198
Bse1I ACTGG 5 cut(s) 215, 664, 824, 1093, 1865
Bse3DI GCAATG 1 cut(s) 1119
Bse8I GATNNNNATC 2 cut(s) 830, 2106
BseBI CCWGG 3 cut(s) 102, 870, 1325
BseCI ATCGAT 1 cut(s) 2237
BseDI CCNNGG 6 cut(s) 100, 454, 1290, 1324, 1333, 1923
BseGI GGATG 2 cut(s) 555, 1672
BseJI GATNNNNATC 2 cut(s) 830, 2106
BseLI CCNNNNNNNGG 4 cut(s) 43, 537, 1039, 1878
BseMI GCAATG 1 cut(s) 1119
BseMII CTCAG 3 cut(s) 104, 1568, 1833
BseNI ACTGG 5 cut(s) 215, 664, 824, 1093, 1865
BsePI GCGCGC 1 cut(s) 1603
BseXI GCAGC 6 cut(s) 92, 264, 519, 648, 1104, 1111
BseYI CCCAGC 2 cut(s) 370, 560
Bsh1236I CGCG 3 cut(s) 1603, 1605, 1607
BshFI GGCC 6 cut(s) 5, 95, 327, 663, 1323, 1332
BshVI ATCGAT 1 cut(s) 2237
BsiHKAI GWGCWC 2 cut(s) 866, 1848
BsiSI CCGG 4 cut(s) 531, 1636, 1854, 2199
BslFI GGGAC 3 cut(s) 978, 1652, 1714
BslI CCNNNNNNNGG 4 cut(s) 43, 537, 1039, 1878
BsmAI GTCTC 3 cut(s) 19, 542, 2133
BsmBI CGTCTC 1 cut(s) 2133
BsmFI GGGAC 3 cut(s) 978, 1652, 1714
BsmI GAATGC 1 cut(s) 926
BsnI GGCC 6 cut(s) 5, 95, 327, 663, 1323, 1332
Bsp1286I GDGCHC 2 cut(s) 866, 1848
Bsp143I GATC 9 cut(s) 387, 694, 1044, 1074, 1234, 1411, 1709, 2107, 2238
Bsp1720I GCTNAGC 1 cut(s) 1842
Bsp19I CCATGG 1 cut(s) 1923
BspACI CCGC 7 cut(s) 56, 120, 280, 328, 564, 2066, 2069
BspANI GGCC 6 cut(s) 5, 95, 327, 663, 1323, 1332
BspCNI CTCAG 3 cut(s) 103, 1567, 1834
BspDI ATCGAT 1 cut(s) 2237
BspFNI CGCG 3 cut(s) 1603, 1605, 1607
BspHI TCATGA 2 cut(s) 1564, 2152
BspLI GGNNCC 2 cut(s) 756, 1773
BspMAI CTGCAG 4 cut(s) 324, 439, 638, 2227
BspMI ACCTGC 2 cut(s) 1063, 2216
BspPI GGATC 1 cut(s) 1704
BsrDI GCAATG 1 cut(s) 1119
BsrFI RCCGGY 1 cut(s) 2198
BsrI ACTGG 5 cut(s) 215, 664, 824, 1093, 1865
BssAI RCCGGY 1 cut(s) 2198
BssECI CCNNGG 6 cut(s) 100, 454, 1290, 1324, 1333, 1923
BssHII GCGCGC 1 cut(s) 1603
BssMI GATC 9 cut(s) 387, 694, 1044, 1074, 1234, 1411, 1709, 2107, 2238
BssNI GRCGYC 1 cut(s) 2142
BssT1I CCWWGG 2 cut(s) 1333, 1923
Bst2UI CCWGG 3 cut(s) 102, 870, 1325
Bst4CI ACNGT 3 cut(s) 272, 1342, 1744
Bst6I CTCTTC 1 cut(s) 459
BstACI GRCGYC 1 cut(s) 2142
BstAPI GCANNNNNTGC 1 cut(s) 1688
BstBAI YACGTR 1 cut(s) 295
BstC8I GCNNGC 3 cut(s) 793, 866, 1605
BstDEI CTNAG 4 cut(s) 90, 343, 1554, 1842
BstDSI CCRYGG 2 cut(s) 1290, 1923
BstF5I GGATG 2 cut(s) 555, 1672
BstFNI CGCG 3 cut(s) 1603, 1605, 1607
BstHHI GCGC 3 cut(s) 1605, 1607, 2014
BstKTI GATC 9 cut(s) 390, 697, 1047, 1077, 1237, 1414, 1712, 2110, 2241
BstMAI GTCTC 3 cut(s) 19, 542, 2133
BstMBI GATC 9 cut(s) 387, 694, 1044, 1074, 1234, 1411, 1709, 2107, 2238
BstMWI GCNNNNNNNGC 7 cut(s) 53, 507, 797, 1124, 1329, 1688, 2009
BstNI CCWGG 3 cut(s) 102, 870, 1325
BstNSI RCATGY 2 cut(s) 487, 795
BstSCI CCNGG 4 cut(s) 100, 868, 1323, 1635
BstSFI CTRYAG 6 cut(s) 320, 435, 634, 708, 843, 2223
BstSNI TACGTA 1 cut(s) 295
BstUI CGCG 3 cut(s) 1603, 1605, 1607
BstV1I GCAGC 6 cut(s) 92, 264, 519, 648, 1104, 1111
BstV2I GAAGAC 1 cut(s) 368
BstX2I RGATCY 2 cut(s) 694, 1709
BstXI CCANNNNNNTGG 1 cut(s) 899
BstYI RGATCY 2 cut(s) 694, 1709
Bsu15I ATCGAT 1 cut(s) 2237
BsuRI GGCC 6 cut(s) 5, 95, 327, 663, 1323, 1332
BsuTUI ATCGAT 1 cut(s) 2237
BtgI CCRYGG 2 cut(s) 1290, 1923
BtrI CACGTC 1 cut(s) 339
BtsCI GGATG 2 cut(s) 555, 1672
BveI ACCTGC 2 cut(s) 1063, 2216
Cac8I GCNNGC 3 cut(s) 793, 866, 1605
CciI TCATGA 2 cut(s) 1564, 2152
CfoI GCGC 3 cut(s) 1605, 1607, 2014
Cfr10I RCCGGY 1 cut(s) 2198
Cfr13I GGNCC 8 cut(s) 94, 325, 754, 1138, 1294, 1771, 1834, 2201
ClaI ATCGAT 1 cut(s) 2237
CseI GACGC 4 cut(s) 437, 499, 589, 802
Csp6I GTAC 8 cut(s) 63, 1003, 1086, 1338, 1558, 1748, 1780, 2220
CviQI GTAC 8 cut(s) 63, 1003, 1086, 1338, 1558, 1748, 1780, 2220
DdeI CTNAG 4 cut(s) 90, 343, 1554, 1842
DpnI GATC 9 cut(s) 389, 696, 1046, 1076, 1236, 1413, 1711, 2109, 2240
DpnII GATC 9 cut(s) 387, 694, 1044, 1074, 1234, 1411, 1709, 2107, 2238
DraI TTTAAA 2 cut(s) 691, 1189
DriI GACNNNNNGTC 1 cut(s) 1645
EaeI YGGCCR 1 cut(s) 1321
Eam1104I CTCTTC 1 cut(s) 459
Eam1105I GACNNNNNGTC 1 cut(s) 1645
EarI CTCTTC 1 cut(s) 459
Ecl136II GAGCTC 1 cut(s) 1846
Eco105I TACGTA 1 cut(s) 295
Eco130I CCWWGG 2 cut(s) 1333, 1923
Eco24I GRGCYC 1 cut(s) 1848
Eco47I GGWCC 6 cut(s) 754, 1138, 1294, 1771, 1834, 2201
Eco53kI GAGCTC 1 cut(s) 1846
Eco57I CTGAAG 1 cut(s) 605
EcoICRI GAGCTC 1 cut(s) 1846
EcoO109I RGGNCCY 1 cut(s) 94
EcoRI GAATTC 2 cut(s) 179, 1314
EcoRII CCWGG 3 cut(s) 100, 868, 1323
EcoT14I CCWWGG 2 cut(s) 1333, 1923
EcoT22I ATGCAT 1 cut(s) 2024
EcoT38I GRGCYC 1 cut(s) 1848
ErhI CCWWGG 2 cut(s) 1333, 1923
Esp3I CGTCTC 1 cut(s) 2133
FaqI GGGAC 3 cut(s) 978, 1652, 1714
FauNDI CATATG 1 cut(s) 491
FbaI TGATCA 3 cut(s) 1074, 1234, 2107
FokI GGATG 2 cut(s) 542, 1679
FriOI GRGCYC 1 cut(s) 1848
FspBI CTAG 5 cut(s) 60, 971, 1059, 1115, 1901
FspI TGCGCA 1 cut(s) 2013
GlaI GCGC 3 cut(s) 1604, 1606, 2013
GsaI CCCAGC 2 cut(s) 374, 564
GsuI CTGGAG 1 cut(s) 1301
HaeIII GGCC 6 cut(s) 5, 95, 327, 663, 1323, 1332
HapII CCGG 4 cut(s) 531, 1636, 1854, 2199
HgaI GACGC 4 cut(s) 437, 499, 589, 802
HhaI GCGC 3 cut(s) 1605, 1607, 2014
Hin1I GRCGYC 1 cut(s) 2142
Hin6I GCGC 3 cut(s) 1603, 1605, 2012
HinP1I GCGC 3 cut(s) 1603, 1605, 2012
HincII GTYRAC 1 cut(s) 817
HindII GTYRAC 1 cut(s) 817
HindIII AAGCTT 1 cut(s) 2169
HinfI GANTC 4 cut(s) 238, 839, 1447, 1933
HpaII CCGG 4 cut(s) 531, 1636, 1854, 2199
HphI GGTGA 4 cut(s) 284, 1244, 1421, 2155
Hpy166II GTNNAC 5 cut(s) 817, 1345, 1367, 1650, 1819
Hpy188I TCNGA 5 cut(s) 455, 699, 1074, 2147, 2243
Hpy188III TCNNGA 6 cut(s) 1415, 1565, 1707, 1849, 1952, 2153
Hpy8I GTNNAC 5 cut(s) 817, 1345, 1367, 1650, 1819
Hpy99I CGWCG 2 cut(s) 515, 2147
HpyAV CCTTC 7 cut(s) 151, 653, 655, 775, 872, 1925, 2031
HpyCH4III ACNGT 3 cut(s) 272, 1342, 1744
HpyCH4IV ACGT 5 cut(s) 294, 338, 956, 2044, 2142
HpyF10VI GCNNNNNNNGC 7 cut(s) 53, 507, 797, 1124, 1329, 1688, 2009
HpyF3I CTNAG 4 cut(s) 90, 343, 1554, 1842
HpySE526I ACGT 5 cut(s) 294, 338, 956, 2044, 2142
Hsp92I GRCGYC 1 cut(s) 2142
HspAI GCGC 3 cut(s) 1603, 1605, 2012
Ksp22I TGATCA 3 cut(s) 1074, 1234, 2107
Kzo9I GATC 9 cut(s) 387, 694, 1044, 1074, 1234, 1411, 1709, 2107, 2238
LmnI GCTCC 4 cut(s) 533, 1213, 1276, 1927
Lsp1109I GCAGC 6 cut(s) 92, 264, 519, 648, 1104, 1111
LweI GCATC 3 cut(s) 969, 1657, 2092
MaeI CTAG 5 cut(s) 60, 971, 1059, 1115, 1901
MaeII ACGT 5 cut(s) 294, 338, 956, 2044, 2142
MaeIII GTNAC 4 cut(s) 164, 247, 425, 848
MalI GATC 9 cut(s) 389, 696, 1046, 1076, 1236, 1413, 1711, 2109, 2240
MauBI CGCGCGCG 1 cut(s) 1603
MboI GATC 9 cut(s) 387, 694, 1044, 1074, 1234, 1411, 1709, 2107, 2238
MboII GAAGA 9 cut(s) 166, 188, 368, 473, 476, 668, 1218, 1997, 2223
MfeI CAATTG 1 cut(s) 190
MflI RGATCY 2 cut(s) 694, 1709
MhlI GDGCHC 2 cut(s) 866, 1848
MlsI TGGCCA 1 cut(s) 1323
MluNI TGGCCA 1 cut(s) 1323
MlyI GAGTC 1 cut(s) 848
MmeI TCCRAC 1 cut(s) 2125
Mox20I TGGCCA 1 cut(s) 1323
Mph1103I ATGCAT 1 cut(s) 2024
MroXI GAANNNNTTC 2 cut(s) 785, 1549
MscI TGGCCA 1 cut(s) 1323
MseI TTAA 8 cut(s) 627, 690, 729, 1188, 1401, 1434, 1461, 1479
MslI CAYNNNNRTG 2 cut(s) 897, 1470
Msp20I TGGCCA 1 cut(s) 1323
MspA1I CMGCKG 1 cut(s) 564
MspI CCGG 4 cut(s) 531, 1636, 1854, 2199
MspR9I CCNGG 4 cut(s) 102, 870, 1325, 1637
MunI CAATTG 1 cut(s) 190
Mva1269I GAATGC 1 cut(s) 926
MvaI CCWGG 3 cut(s) 102, 870, 1325
MvnI CGCG 3 cut(s) 1603, 1605, 1607
MwoI GCNNNNNNNGC 7 cut(s) 53, 507, 797, 1124, 1329, 1688, 2009
NciI CCSGG 1 cut(s) 1637
NcoI CCATGG 1 cut(s) 1923
NdeI CATATG 1 cut(s) 491
NdeII GATC 9 cut(s) 387, 694, 1044, 1074, 1234, 1411, 1709, 2107, 2238
NlaIV GGNNCC 2 cut(s) 756, 1773
NmuCI GTSAC 1 cut(s) 425
NsbI TGCGCA 1 cut(s) 2013
NsiI ATGCAT 1 cut(s) 2024
NspI RCATGY 2 cut(s) 487, 795
PaeI GCATGC 1 cut(s) 795
PagI TCATGA 2 cut(s) 1564, 2152
PauI GCGCGC 1 cut(s) 1603
PcsI WCGNNNNNNNCGW 1 cut(s) 1420
PctI GAATGC 1 cut(s) 926
PdmI GAANNNNTTC 2 cut(s) 785, 1549
PfeI GAWTC 3 cut(s) 238, 1447, 1933
PflFI GACNNNGTC 1 cut(s) 1879
PleI GAGTC 1 cut(s) 847
PpsI GAGTC 1 cut(s) 847
Ppu21I YACGTR 1 cut(s) 295
PshBI ATTAAT 1 cut(s) 1434
Psp124BI GAGCTC 1 cut(s) 1848
Psp6I CCWGG 3 cut(s) 100, 868, 1323
PspFI CCCAGC 2 cut(s) 370, 560
PspGI CCWGG 3 cut(s) 100, 868, 1323
PspN4I GGNNCC 2 cut(s) 756, 1773
PspPI GGNCC 8 cut(s) 94, 325, 754, 1138, 1294, 1771, 1834, 2201
PsrI GAACNNNNNNTAC 2 cut(s) 2212, 2244
PstI CTGCAG 4 cut(s) 324, 439, 638, 2227
PsuI RGATCY 2 cut(s) 694, 1709
PsyI GACNNNGTC 1 cut(s) 1879
PteI GCGCGC 1 cut(s) 1603
RsaI GTAC 8 cut(s) 64, 1004, 1087, 1339, 1559, 1749, 1781, 2221
RsaNI GTAC 8 cut(s) 63, 1003, 1086, 1338, 1558, 1748, 1780, 2220
RseI CAYNNNNRTG 2 cut(s) 897, 1470
SacI GAGCTC 1 cut(s) 1848
SaqAI TTAA 8 cut(s) 627, 690, 729, 1188, 1401, 1434, 1461, 1479
Sau3AI GATC 9 cut(s) 387, 694, 1044, 1074, 1234, 1411, 1709, 2107, 2238
Sau96I GGNCC 8 cut(s) 94, 325, 754, 1138, 1294, 1771, 1834, 2201
SbfI CCTGCAGG 1 cut(s) 324
ScaI AGTACT 1 cut(s) 1781
SchI GAGTC 1 cut(s) 848
ScrFI CCNGG 4 cut(s) 102, 870, 1325, 1637
SdaI CCTGCAGG 1 cut(s) 324
SduI GDGCHC 2 cut(s) 866, 1848
SfaNI GCATC 3 cut(s) 969, 1657, 2092
SfcI CTRYAG 6 cut(s) 320, 435, 634, 708, 843, 2223
SfiI GGCCNNNNNGGCC 1 cut(s) 1329
SinI GGWCC 6 cut(s) 754, 1138, 1294, 1771, 1834, 2201
SmiMI CAYNNNNRTG 2 cut(s) 897, 1470
SmlI CTYRAG 2 cut(s) 242, 1959
SmoI CTYRAG 2 cut(s) 242, 1959
SnaBI TACGTA 1 cut(s) 295
SphI GCATGC 1 cut(s) 795
Sse8387I CCTGCAGG 1 cut(s) 324
SsiI CCGC 7 cut(s) 56, 120, 280, 328, 564, 2066, 2069
SspMI CTAG 5 cut(s) 60, 971, 1059, 1115, 1901
SstI GAGCTC 1 cut(s) 1848
StyD4I CCNGG 4 cut(s) 100, 868, 1323, 1635
StyI CCWWGG 2 cut(s) 1333, 1923
TaaI ACNGT 3 cut(s) 272, 1342, 1744
TaiI ACGT 5 cut(s) 297, 341, 959, 2047, 2145
TaqI TCGA 5 cut(s) 513, 772, 1883, 2086, 2237
TatI WGTACW 4 cut(s) 62, 1557, 1747, 1779
TauI GCSGC 5 cut(s) 59, 123, 330, 2069, 2072
TfiI GAWTC 3 cut(s) 238, 1447, 1933
Tru1I TTAA 8 cut(s) 627, 690, 729, 1188, 1401, 1434, 1461, 1479
Tru9I TTAA 8 cut(s) 627, 690, 729, 1188, 1401, 1434, 1461, 1479
TseFI GTSAC 1 cut(s) 425
TseI GCWGC 6 cut(s) 105, 277, 507, 636, 1092, 1124
Tsp45I GTSAC 1 cut(s) 425
TspGWI ACGGA 4 cut(s) 250, 767, 966, 1307
Tth111I GACNNNGTC 1 cut(s) 1879
VpaK11BI GGWCC 6 cut(s) 754, 1138, 1294, 1771, 1834, 2201
VspI ATTAAT 1 cut(s) 1434
XapI RAATTY 5 cut(s) 179, 1314, 1509, 1529, 2122
XceI RCATGY 2 cut(s) 487, 795
XmnI GAANNNNTTC 2 cut(s) 785, 1549
XspI CTAG 5 cut(s) 60, 971, 1059, 1115, 1901
ZraI GACGTC 1 cut(s) 2143
ZrmI AGTACT 1 cut(s) 1781
Zsp2I ATGCAT 1 cut(s) 2024
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.