Rw2G041240

wall-associated receptor kinase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000052
Physical Location & Seq
Forward (+)
67227037 .. 67231844
4808 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G041240.1

Sequence Viewer

Length: 2430 bp
ATGGAGGACAGCCAGTGCCCTATTTTGATCACAACCAAAGTCCTTACCAGTAAGGCAAGAAGTCTTTTTCCAAAAGGCAAGAAAAGAACCTTGTGGCGAGGTTGGTGCTCTCCTCGTCCACATCGTTTGAAGAAGAAGTCAGGTCAAGGGACTACCCCGACGACTGCACCCCACGGTGCTGGCACGCTTGCGCAATCACATCAGCAAAAGAGACAGTTTGCACGCCAGTTGGTTTTGGAGCCAAACAATAATACTATTGCGGCGCAGCCGGTAGCATCAGAAGCCTTACCGATAGCAAAGCCTAATTGTACACAAGATTGCGGAGACGTTAAAATCCCATATCCTTTTGGAATTGAAGCAGGTTGTTACATAGACGACTGGTTCAAAATTTTCTGTTACAAACCCACCGGCAAGTTCGCCGGCCAACCCACAGCTTACTTGAACCCCGCCAATCTGAACCTTGTGGTCTTCAATATATCTCTTGAAGCAGGAACAATACAGGTAACAACTAACTTCACCTTCTCTAGTCTTGGCTGCGTTGATCAGCGAACTGCCGTCCTACCAGCCAACTTGAGCGGAAGCCCATTCCTCTACTCCGAGAAAAACAAATTCACTGTAATTGGATGCGGTGGAATCACCTGGATGATGCTCTCCAACGGTTCAAAAGGTGGTGGCTGCCTGGCCACTTGTGACGGCAGTGATCCTGCACAACGTGAATTTCTTGATGGCTGCACAGGTATCAACTCATGCTGCCAGACCAACATTCCTCCGAATCTTACTGCTTTCAACTACAGCTATCAAGCAATAGATACAACTTACCCTGGAAATGACTCTTGCAAGAAGGCATTTTTGGTAAACCCGGATTGGGTTGGGTACTCAAGCGGAGGAATGGTATCCATAAAGCAACTTGCCATCCCTATGTTGCTCGACTGGAGATTAAGTAATTACTCAACTCTTCAAATACGTGGAACAGCTGATTGGGCCAATAACTCGGGCACGACATGCACAAATGCTAGTTTGTGTTCCTGCTCATCCGGGTTTCAGGGAAACCCCTACCTTCCCAACGGATGTCAAGATATCAATGAATGTGAAGATTCAGACCCATGTCCTGGTGCCAGCATTTGTATCAACGTTCGTGGTTCGTTTAGGTGCCAATCTCCGGATCAAACGGTTAAACTGGCAATTATTGTTGTCGGCAGTGTTCTTGGAGCATTGCTTATACTCATTTGTGCATGGGGGTTACACACAGTCATAAAGAAAAGAATAAACACTAAACGCAAGGAGAAGTTTTTTAAGCAGAATGGTGGTTTGCTGCTGGAGAAACAATCTTCTGGTGACGTTAATGTTGAGAAAATTAAATTGTTCAATTCCGAGGAGTTGGAGAAAGCCACAGATAATTATAATGCAAACAGAATTCTAGGTCAAGGAGGCCATGGAACTGTTTACAAAGGCATGCTCGCAGATGGAAGTATTGTGGCGATAAAGAAGTCTAAAATAGTTGATGAAGGAGAAGTTGAACAATTCATTAATGAAATTGTTATTCTTTCACAAATAATTCATAGGAATGTGGTTAAATTAATGGGTTGTTGTTTAGAGACCGAAGTTCCCCTTCTAGTTTATGAATTCATACCAAATGGAACTCTTTCTCAGTATATTCATCACCAGAATGAGGAGTTTCCTCTTACATGGAGAGTGCGGTTGCGAGTTTCTATTGAAGTGGCAGGAGCTCTTTCCTACTTACACTCAGAAACTTCCTTTCCCATTTACCATCGAGATATCAAGACCTCCAACATACTCTTGGATGATAAATTTAGAGCTAAAGTTGCAGACTTTGGAACTTCCAGAACAGTTGCCATCGACAAAACACATCTTACCATGTCACAAGTTCAAGGAACATTTGGTTATTTAGACCCAGAGTACTTTCAGTCTAGCCAATTTACAGATAAGAGTGATGTTTATAGCTTTGGAGTGGTCCTTGTTGAACTTCTAACTGGGCAAAAGCCAGTTTCTCAGACGAGGCCAGAAGAGTGGAGAAGCCTGACAAATTATTTCCTTCTTTCAATGGAGGAGAATCGTCTGCTTGACATTCTTGATGCTCGAGTTATGAATGAAGGTGGCAAGGATGAAATTATGGCAGTTGCACAGCTTGCAAGGCGTTGCTTGAATATGAAGGGAAAGAAGCGTCCTACTATGAAAGAAGTTGCAGTTCAATTGGAGGGAATATTTCAATTATCAGCAAACGATTCTGACGTTCATACAAATTCAGCAGAGGTTGAATATGTCCTAAATGGATGGCATGTTGGTTCTACTTCAGCACGATATAACACAATCCATATTGGTAGTGGTTCTCCATCGGATGCACGAGATAACACAATCCATATTGGTAGTGGTTCTCCATCGGATGTAGAACCACTTATATATGTTTCTTGA

Protein Analysis

809

Amino Acids

88.86

Weight (kDa)

7.67

Isoelectric Point (pI)

35.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 103 - 169 5.3e-09 Wall-associated receptor kinase galacturonan-binding
Pkinase PF00069 467 - 734 6e-48 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 470 - 738 6.8e-49 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000052)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16090 AT1G16110 AT1G16120 AT1G16130 AT1G16150 AT1G16160 AT1G16260 AT1G16260 AT1G16260 AT1G79670 AT1G79670
fragaria_vesca FvH4_1g22960 FvH4_3g09860 FvH4_3g10284 FvH4_3g10284 FvH4_3g10540 FvH4_3g24040 FvH4_3g35290 FvH4_3g35290 FvH4_5g06860 FvH4_5g06940 FvH4_6g15920 FvH4_6g15920 FvH4_6g37660 FvH4_6g37670 FvH4_6g37691 FvH4_6g37700 FvH4_6g37710 FvH4_6g38990 FvH4_6g39000 FvH4_6g39020 FvH4_6g39020 FvH4_6g39020 FvH4_6g39021 FvH4_6g39030 FvH4_6g39030 FvH4_6g39031 FvH4_6g39032 FvH4_6g45200 FvH4_6g45200
malus_domestica MD08G1107900.v1.1 MD09G1145100.v1.1 MD09G1145200.v1.1 MD09G1145300.v1.1 MD09G1145400.v1.1 MD09G1145500.v1.1 MD17G1131600.v1.1 MD17G1131700.v1.1 MD17G1131900.v1.1 MD17G1132000.v1.1
prunus_persica Prupe.1G188400_v2.0.a1 Prupe.1G188700_v2.0.a1 Prupe.3G180500_v2.0.a1 Prupe.3G180600_v2.0.a1 Prupe.3G180700_v2.0.a1 Prupe.3G181000_v2.0.a1 Prupe.3G181100_v2.0.a1 Prupe.3G181100_v2.0.a1 Prupe.3G181200_v2.0.a1 Prupe.3G181200_v2.0.a1 Prupe.3G181400_v2.0.a1 Prupe.3G181500_v2.0.a1 Prupe.3G181600_v2.0.a1 Prupe.3G181800_v2.0.a1 Prupe.3G181900_v2.0.a1 Prupe.3G182000_v2.0.a1 Prupe.3G182100_v2.0.a1 Prupe.3G182200_v2.0.a1 Prupe.3G182300_v2.0.a1 Prupe.3G182400_v2.0.a1 Prupe.3G182500_v2.0.a1 Prupe.3G182600_v2.0.a1 Prupe.3G182700_v2.0.a1 Prupe.5G051200_v2.0.a1 Prupe.5G051300_v2.0.a1 Prupe.5G051400_v2.0.a1 Prupe.5G051500_v2.0.a1 Prupe.5G051600_v2.0.a1 Prupe.5G051600_v2.0.a1 Prupe.5G051800_v2.0.a1
pyrus_communis pycom09g06470 pycom09g06490 pycom09g06510 pycom09g06520 pycom09g06570 pycom09g06580 pycom17g12440 pycom17g12450 pycom17g12530
rosa_chinensis RchiOBHm_Chr2g0117481 RchiOBHm_Chr2g0128321 RchiOBHm_Chr2g0128331 RchiOBHm_Chr2g0128581 RchiOBHm_Chr2g0128591 RchiOBHm_Chr2g0150651 RchiOBHm_Chr2g0150661 RchiOBHm_Chr2g0150741 RchiOBHm_Chr2g0150781 RchiOBHm_Chr2g0152581 RchiOBHm_Chr2g0152591 RchiOBHm_Chr2g0152641 RchiOBHm_Chr2g0152661 RchiOBHm_Chr2g0152711 RchiOBHm_Chr2g0152731 RchiOBHm_Chr2g0152871 RchiOBHm_Chr2g0152881 RchiOBHm_Chr2g0152901 RchiOBHm_Chr2g0152921 RchiOBHm_Chr2g0152931 RchiOBHm_Chr2g0152941 RchiOBHm_Chr3g0469621 RchiOBHm_Chr3g0469631 RchiOBHm_Chr5g0015591 RchiOBHm_Chr5g0046061 RchiOBHm_Chr5g0047341 RchiOBHm_Chr5g0063341 RchiOBHm_Chr5g0063351 RchiOBHm_Chr6g0264381 RchiOBHm_Chr7g0191741 RchiOBHm_Chr7g0210751 RchiOBHm_Chr7g0221871 RchiOBHm_Chr7g0225671 RchiOBHm_Chr7g0225891 RchiOBHm_Chr7g0225901 RchiOBHm_Chr7g0225961 RchiOBHm_Chr7g0225971 RchiOBHm_Chr7g0234031 RchiOBHm_Chr7g0234041
rosa_laevigata RLG00000001780 RLG00000001784 RLG00000001785 RLG00000001788 RLG00000001789 RLG00000001793 RLG00000001794 RLG00000002941 RLG00000004430 RLG00000014259 RLG00000018349 RLG00000019001 RLG00000019005 RLG00000019011 RLG00000020503 RLG00000020507 RLG00000020648 RLG00000020649 RLG00000020651 RLG00000020652 RLG00000020653 RLG00000020655 RLG00000020656 RLG00000020657 RLG00000023668 RLG00000024331 RLG00000034386 RLG00000035624 RLG00000035625
rosa_multiflora Rmu_co8401977.1_g000001 Rmu_co8409989.1_g000001 Rmu_co8432067.1_g000001 Rmu_co8491011.1_g000001 Rmu_sc0000580.1_g000085 Rmu_sc0000740.1_g000012 Rmu_sc0000740.1_g000014 Rmu_sc0000837.1_g000041 Rmu_sc0000837.1_g000077 Rmu_sc0001552.1_g000008 Rmu_sc0001617.1_g000001 Rmu_sc0002082.1_g000006 Rmu_sc0002082.1_g000007 Rmu_sc0002082.1_g000022 Rmu_sc0002989.1_g000013 Rmu_sc0003064.1_g000011 Rmu_sc0003127.1_g000003 Rmu_sc0003127.1_g000014 Rmu_sc0003127.1_g000028 Rmu_sc0003127.1_g000032 Rmu_sc0003127.1_g000034 Rmu_sc0003127.1_g000035 Rmu_sc0003127.1_g000054 Rmu_sc0003127.1_g000055 Rmu_sc0003465.1_g000034 Rmu_sc0005223.1_g000021 Rmu_sc0005302.1_g000004 Rmu_sc0005378.1_g000005 Rmu_sc0005378.1_g000007 Rmu_sc0005378.1_g000017 Rmu_sc0005378.1_g000034 Rmu_sc0005378.1_g000039 Rmu_sc0005378.1_g000042 Rmu_sc0005378.1_g000056 Rmu_sc0005378.1_g000057 Rmu_sc0005378.1_g000058 Rmu_sc0006483.1_g000013 Rmu_sc0008775.1_g000006 Rmu_sc0008775.1_g000011 Rmu_sc0009104.1_g000010 Rmu_sc0009104.1_g000011 Rmu_sc0009104.1_g000020 Rmu_sc0010960.1_g000006 Rmu_sc0011737.1_g000002 Rmu_sc0011737.1_g000004 Rmu_sc0012875.1_g000003 Rmu_sc0013122.1_g000002 Rmu_sc0018944.1_g000002 Rmu_sc0020155.1_g000001 Rmu_sc0020156.1_g000001 Rmu_ssc0000233.1_g000012 Rmu_ssc0000233.1_g000013 Rmu_ssc0000233.1_g000030 Rmu_ssc0000233.1_g000044 Rmu_ssc0000233.1_g000047 Rmu_ssc0000233.1_g000052 Rmu_ssc0000233.1_g000054 Rmu_ssc0000233.1_g000055 Rmu_ssc0000233.1_g000080 Rmu_ssc0000233.1_g000082 Rmu_ssc0000233.1_g000087 Rmu_ssc0000233.1_g000094 Rmu_ssc0000480.1_g000060 Rmu_ssc0000480.1_g000061
rosa_roxburghii Rroxscaffold_1G00017360 Rroxscaffold_1G00017370 Rroxscaffold_1G00060880 Rroxscaffold_2G00095370 Rroxscaffold_2G00095420 Rroxscaffold_2G00095450 Rroxscaffold_2G00095460 Rroxscaffold_2G00095490 Rroxscaffold_2G00095560 Rroxscaffold_2G00095570 Rroxscaffold_2G00096960 Rroxscaffold_2G00097010 Rroxscaffold_2G00126500 Rroxscaffold_3G00233390 Rroxscaffold_3G00233580 Rroxscaffold_3G00263590 Rroxscaffold_6G00411660
rosa_rugosa Rorug01G0142700.1 Rorug01G0148600.1 Rorug02G0212800 Rorug02G0422400 Rorug02G0434700 Rorug02G0434800 Rorug02G0435000 Rorug02G0435200 Rorug02G0435300 Rorug02G0435400 Rorug02G0435700 Rorug02G0435800 Rorug02G0436200 Rorug02G0436300 Rorug03G0102800 Rorug04G0123600 Rorug04G0123700 Rorug04G0123800 Rorug04G0124000 Rorug04G0124000 Rorug04G0124500 Rorug04G0124700 Rorug04G0124900 Rorug05G0028600.1 Rorug05G0356100 Rorug05G0356800 Rorug06G0011900 Rorug07G0092900 Rorug07G0122800 Rorug07G0232500 Rorug07G0232600 Rorug07G0232700
rosa_samantha Rh1AG408900 Rh2AG332700 Rh2AG333400 Rh2AG482100 Rh2AG482200 Rh2AG482500 Rh2AG496000 Rh2AG496100 Rh2AG496200 Rh2AG496300 Rh2AG497100 Rh2AG497200 Rh2AG497400 Rh2BG280300 Rh2BG340500 Rh2BG494400 Rh2BG494900 Rh2BG507800 Rh2BG507900 Rh2BG508000 Rh2BG508100 Rh2BG508300 Rh2BG508500 Rh2BG508700 Rh2BG509200 Rh2BG512700 Rh2CG271900 Rh2CG319100 Rh2CG319400 Rh2CG357200 Rh2CG468400 Rh2CG468500 Rh2CG468800 Rh2CG482200 Rh2CG482300 Rh2CG482400 Rh2CG482500 Rh2CG483200 Rh2CG483300 Rh2CG483500 Rh2CG483600 Rh2DG294600 Rh2DG357100 Rh2DG357700 Rh2DG503400 Rh2DG504300 Rh2DG504900 Rh2DG505500 Rh2DG505900 Rh2DG519000 Rh2DG519100 Rh2DG519300 Rh2DG519400 Rh2DG520000 Rh2DG520200 Rh2DG520500 Rh2DG521000 Rh2DG524300 Rh3AG152400 Rh3AG334400 Rh3BG176100 Rh3CG167200 Rh3DG199400 Rh3DG199500 Rh5AG415900 Rh5BG430800 Rh5CG454300 Rh5DG444600 Rh6AG247500 Rh6AG247700 Rh7AG120600 Rh7AG369800 Rh7AG370800 Rh7AG468300 Rh7BG366400 Rh7CG125200 Rh7CG388700 Rh7CG389400 Rh7CG459600 Rh7DG123300 Rh7DG123400 Rh7DG123800 Rh7DG123900 Rh7DG377200
rosa_wichuraiana Rw0G004850 Rw0G004870 Rw0G013120 Rw1G013520 Rw2G026850 Rw2G026910 Rw2G027120 Rw2G039340 Rw2G039360 Rw2G039410 Rw2G039420 Rw2G039440 Rw2G039520 Rw2G040810 Rw2G040830 Rw2G040850 Rw2G040860 Rw2G040880 Rw2G041210 Rw2G041220 Rw2G041240 Rw2G041250 Rw3G014370 Rw5G010520 Rw5G039070 Rw6G021410 Rw6G021420 Rw7G010280 Rw7G021780 Rw7G031820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1401
Acc16I TGCGCA 1 cut(s) 192
Acc36I ACCTGC 1 cut(s) 350
AccB1I GGYRCC 2 cut(s) 1112, 1149
AccB7I CCANNNNNTGG 1 cut(s) 1109
AccBSI CCGCTC 1 cut(s) 576
AccIII TCCGGA 1 cut(s) 1159
AciI CCGC 7 cut(s) 260, 321, 447, 576, 627, 882, 1696
AclI AACGTT 1 cut(s) 1131
AclWI GGATC 2 cut(s) 695, 1170
AcoI YGGCCR 2 cut(s) 421, 681
AcsI RAATTY 7 cut(s) 387, 608, 716, 1413, 1622, 1808, 2260
AcuI CTGAAG 1 cut(s) 2295
AdeI CACNNNGTG 1 cut(s) 713
AfaI GTAC 3 cut(s) 310, 875, 1919
AfiI CCNNNNNNNGG 4 cut(s) 865, 1109, 1159, 1669
AjnI CCWGG 4 cut(s) 638, 678, 820, 1108
AjuI GAANNNNNNNTTGG 4 cut(s) 833, 865, 961, 993
AluBI AGCT 7 cut(s) 434, 795, 974, 1727, 1817, 1962, 2146
AluI AGCT 7 cut(s) 434, 795, 974, 1727, 1817, 1962, 2146
Alw21I GWGCWC 2 cut(s) 110, 1729
Alw26I GTCTC 3 cut(s) 205, 318, 1589
AlwI GGATC 2 cut(s) 695, 1170
Ama87I CYCGRG 2 cut(s) 991, 2097
Aor13HI TCCGGA 1 cut(s) 1159
AoxI GGCC 5 cut(s) 421, 681, 981, 1429, 2018
ApeKI GCWGC 6 cut(s) 265, 534, 675, 729, 750, 1312
ApoI RAATTY 7 cut(s) 387, 608, 716, 1413, 1622, 1808, 2260
AseI ATTAAT 2 cut(s) 1527, 1577
Asp700I GAANNNNTTC 1 cut(s) 1642
AspLEI GCGC 2 cut(s) 193, 265
AspS9I GGNCC 2 cut(s) 981, 1972
AsuC2I CCSGG 2 cut(s) 860, 1036
AsuHPI GGTGA 4 cut(s) 508, 628, 1346, 1652
AvaI CYCGRG 2 cut(s) 991, 2097
AvaII GGWCC 1 cut(s) 1972
BaeGI GKGCMC 2 cut(s) 20, 998
BalI TGGCCA 1 cut(s) 683
BanI GGYRCC 2 cut(s) 1112, 1149
BanII GRGCYC 1 cut(s) 1729
BauI CACGAG 1 cut(s) 2361
BbsI GAAGAC 1 cut(s) 460
Bbv12I GWGCWC 2 cut(s) 110, 1729
BbvI GCAGC 6 cut(s) 277, 521, 662, 716, 737, 1299
BccI CCATC 8 cut(s) 719, 920, 1457, 1776, 1862, 2286, 2359, 2404
BceAI ACGGC 2 cut(s) 539, 709
BcgI CGANNNNNNTGC 2 cut(s) 87, 121
BciT130I CCWGG 4 cut(s) 640, 680, 822, 1110
BciVI GTATCC 1 cut(s) 904
BclI TGATCA 2 cut(s) 27, 541
BcnI CCSGG 2 cut(s) 860, 1036
BcoDI GTCTC 3 cut(s) 205, 318, 1589
BfaI CTAG 5 cut(s) 525, 1014, 1418, 1613, 1929
BfmI CTRYAG 1 cut(s) 790
BfuAI ACCTGC 1 cut(s) 350
BfuI GTATCC 1 cut(s) 904
BisI GCNGC 7 cut(s) 261, 266, 535, 676, 730, 751, 1313
BlsI GCNGC 7 cut(s) 262, 267, 536, 677, 731, 752, 1314
BmcAI AGTACT 1 cut(s) 1919
Bme1390I CCNGG 6 cut(s) 640, 680, 822, 860, 1036, 1110
Bme18I GGWCC 1 cut(s) 1972
BmeT110I CYCGRG 2 cut(s) 991, 2097
BmgT120I GGNCC 2 cut(s) 981, 1972
BmiI GGNNCC 3 cut(s) 240, 1114, 1151
BmrFI CCNGG 6 cut(s) 640, 680, 822, 860, 1036, 1110
BmrI ACTGGG 1 cut(s) 2001
BmsI GCATC 5 cut(s) 284, 614, 636, 2083, 2347
BmuI ACTGGG 1 cut(s) 2001
BoxI GACNNNNGTC 1 cut(s) 1104
BpiI GAAGAC 1 cut(s) 460
BpmI CTGGAG 2 cut(s) 952, 1337
BpuEI CTTGAG 2 cut(s) 592, 862
BpuMI CCSGG 2 cut(s) 860, 1036
BsaAI YACGTR 1 cut(s) 965
BsaI GGTCTC 1 cut(s) 1589
BsaJI CCNNGG 4 cut(s) 172, 820, 1371, 1432
BsaWI WCCGGW 1 cut(s) 1159
BsaXI ACNNNNNCTCC 4 cut(s) 876, 906, 925, 955
Bsc4I CCNNNNNNNGG 4 cut(s) 865, 1109, 1159, 1669
Bse118I RCCGGY 3 cut(s) 268, 407, 419
Bse1I ACTGG 8 cut(s) 13, 48, 226, 383, 935, 1182, 1996, 2003
Bse3DI GCAATG 1 cut(s) 1211
BseAI TCCGGA 1 cut(s) 1159
BseBI CCWGG 4 cut(s) 640, 680, 822, 1110
BseDI CCNNGG 4 cut(s) 172, 820, 1371, 1432
BseLI CCNNNNNNNGG 4 cut(s) 865, 1109, 1159, 1669
BseMI GCAATG 1 cut(s) 1211
BseMII CTCAG 3 cut(s) 1661, 1758, 2024
BseNI ACTGG 8 cut(s) 13, 48, 226, 383, 935, 1182, 1996, 2003
BseRI GAGGAG 4 cut(s) 102, 1388, 1685, 2081
BseSI GKGCMC 2 cut(s) 20, 998
BseXI GCAGC 6 cut(s) 277, 521, 662, 716, 737, 1299
BsgI GTGCAG 3 cut(s) 150, 690, 715
BshFI GGCC 5 cut(s) 423, 683, 983, 1431, 2020
BshNI GGYRCC 2 cut(s) 1112, 1149
BsiHKAI GWGCWC 2 cut(s) 110, 1729
BsiHKCI CYCGRG 2 cut(s) 991, 2097
BsiSI CCGG 6 cut(s) 269, 408, 420, 860, 1035, 1160
BslFI GGGAC 1 cut(s) 163
BslI CCNNNNNNNGG 4 cut(s) 865, 1109, 1159, 1669
BsmAI GTCTC 3 cut(s) 205, 318, 1589
BsmBI CGTCTC 1 cut(s) 318
BsmFI GGGAC 1 cut(s) 163
BsnI GGCC 5 cut(s) 423, 683, 983, 1431, 2020
Bso31I GGTCTC 1 cut(s) 1589
BsoBI CYCGRG 2 cut(s) 991, 2097
Bsp1286I GDGCHC 4 cut(s) 20, 110, 998, 1729
Bsp13I TCCGGA 1 cut(s) 1159
Bsp1407I TGTACA 1 cut(s) 308
Bsp143I GATC 4 cut(s) 27, 541, 700, 1162
Bsp19I CCATGG 1 cut(s) 1432
BspACI CCGC 7 cut(s) 260, 321, 447, 576, 627, 882, 1696
BspANI GGCC 5 cut(s) 423, 683, 983, 1431, 2020
BspCNI CTCAG 3 cut(s) 1660, 1757, 2023
BspEI TCCGGA 1 cut(s) 1159
BspLI GGNNCC 3 cut(s) 240, 1114, 1151
BspMI ACCTGC 1 cut(s) 350
BspPI GGATC 2 cut(s) 695, 1170
BspT107I GGYRCC 2 cut(s) 1112, 1149
BspTNI GGTCTC 1 cut(s) 1589
BsrBI CCGCTC 1 cut(s) 576
BsrDI GCAATG 1 cut(s) 1211
BsrFI RCCGGY 3 cut(s) 268, 407, 419
BsrGI TGTACA 1 cut(s) 308
BsrI ACTGG 8 cut(s) 13, 48, 226, 383, 935, 1182, 1996, 2003
BssAI RCCGGY 3 cut(s) 268, 407, 419
BssECI CCNNGG 4 cut(s) 172, 820, 1371, 1432
BssMI GATC 4 cut(s) 27, 541, 700, 1162
BssSI CACGAG 1 cut(s) 2361
BssT1I CCWWGG 1 cut(s) 1432
Bst2BI CACGAG 1 cut(s) 2361
Bst2UI CCWGG 4 cut(s) 640, 680, 822, 1110
Bst4CI ACNGT 8 cut(s) 176, 216, 616, 659, 1171, 1249, 1441, 1849
Bst6I CTCTTC 2 cut(s) 960, 2019
BstAPI GCANNNNNTGC 2 cut(s) 1002, 2147
BstAUI TGTACA 1 cut(s) 308
BstBAI YACGTR 1 cut(s) 965
BstC8I GCNNGC 9 cut(s) 181, 185, 189, 223, 421, 1117, 1454, 1458, 2148
BstDEI CTNAG 3 cut(s) 1647, 1744, 2010
BstDSI CCRYGG 2 cut(s) 172, 1432
BstHHI GCGC 2 cut(s) 193, 265
BstKTI GATC 4 cut(s) 30, 544, 703, 1165
BstMAI GTCTC 3 cut(s) 205, 318, 1589
BstMBI GATC 4 cut(s) 27, 541, 700, 1162
BstMWI GCNNNNNNNGC 6 cut(s) 281, 980, 1002, 1823, 2147, 2152
BstNI CCWGG 4 cut(s) 640, 680, 822, 1110
BstNSI RCATGY 3 cut(s) 1005, 1456, 2300
BstPAI GACNNNNGTC 1 cut(s) 1104
BstSCI CCNGG 6 cut(s) 638, 678, 820, 858, 1034, 1108
BstSFI CTRYAG 1 cut(s) 790
BstSLI GKGCMC 2 cut(s) 20, 998
BstV1I GCAGC 6 cut(s) 277, 521, 662, 716, 737, 1299
BstV2I GAAGAC 1 cut(s) 460
BstXI CCANNNNNNTGG 2 cut(s) 179, 2028
BsuI GTATCC 1 cut(s) 904
BsuRI GGCC 5 cut(s) 423, 683, 983, 1431, 2020
BtgI CCRYGG 2 cut(s) 172, 1432
BtsI GCAGTG 2 cut(s) 703, 1204
BtsIMutI CAGTG 4 cut(s) 20, 612, 703, 1204
BveI ACCTGC 1 cut(s) 350
Cac8I GCNNGC 9 cut(s) 181, 185, 189, 223, 421, 1117, 1454, 1458, 2148
CfoI GCGC 2 cut(s) 193, 265
Cfr10I RCCGGY 3 cut(s) 268, 407, 419
Cfr13I GGNCC 2 cut(s) 981, 1972
CseI GACGC 1 cut(s) 2171
Csp6I GTAC 3 cut(s) 309, 874, 1918
CspCI CAANNNNNGTGG 4 cut(s) 108, 143, 1117, 1152
CviAII CATG 9 cut(s) 747, 1002, 1104, 1233, 1433, 1453, 1686, 1876, 2297
CviQI GTAC 3 cut(s) 309, 874, 1918
DdeI CTNAG 3 cut(s) 1647, 1744, 2010
DpnI GATC 4 cut(s) 29, 543, 702, 1164
DpnII GATC 4 cut(s) 27, 541, 700, 1162
DraIII CACNNNGTG 1 cut(s) 713
EaeI YGGCCR 2 cut(s) 421, 681
Eam1104I CTCTTC 2 cut(s) 960, 2019
EarI CTCTTC 2 cut(s) 960, 2019
Ecl136II GAGCTC 1 cut(s) 1727
Eco130I CCWWGG 1 cut(s) 1432
Eco24I GRGCYC 1 cut(s) 1729
Eco31I GGTCTC 1 cut(s) 1589
Eco32I GATATC 2 cut(s) 1078, 1777
Eco47I GGWCC 1 cut(s) 1972
Eco53kI GAGCTC 1 cut(s) 1727
Eco57I CTGAAG 1 cut(s) 2295
Eco88I CYCGRG 2 cut(s) 991, 2097
EcoICRI GAGCTC 1 cut(s) 1727
EcoRI GAATTC 2 cut(s) 1413, 1622
EcoRII CCWGG 4 cut(s) 638, 678, 820, 1108
EcoRV GATATC 2 cut(s) 1078, 1777
EcoT14I CCWWGG 1 cut(s) 1432
EcoT38I GRGCYC 1 cut(s) 1729
ErhI CCWWGG 1 cut(s) 1432
Esp3I CGTCTC 1 cut(s) 318
FaeI CATG 9 cut(s) 750, 1005, 1107, 1236, 1436, 1456, 1689, 1879, 2300
FalI AAGNNNNNCTT 2 cut(s) 1593, 1625
FaqI GGGAC 1 cut(s) 163
FatI CATG 9 cut(s) 746, 1001, 1103, 1232, 1432, 1452, 1685, 1875, 2296
FauI CCCGC 1 cut(s) 454
FbaI TGATCA 2 cut(s) 27, 541
Fnu4HI GCNGC 7 cut(s) 261, 266, 535, 676, 730, 751, 1313
FriOI GRGCYC 1 cut(s) 1729
Fsp4HI GCNGC 7 cut(s) 261, 266, 535, 676, 730, 751, 1313
FspBI CTAG 5 cut(s) 525, 1014, 1418, 1613, 1929
FspI TGCGCA 1 cut(s) 192
GlaI GCGC 2 cut(s) 192, 264
GluI GCNGC 7 cut(s) 261, 266, 535, 676, 730, 751, 1313
GsuI CTGGAG 2 cut(s) 952, 1337
HaeIII GGCC 5 cut(s) 423, 683, 983, 1431, 2020
HapII CCGG 6 cut(s) 269, 408, 420, 860, 1035, 1160
HgaI GACGC 1 cut(s) 2171
HhaI GCGC 2 cut(s) 193, 265
Hin1II CATG 9 cut(s) 750, 1005, 1107, 1236, 1436, 1456, 1689, 1879, 2300
Hin6I GCGC 2 cut(s) 191, 263
HinP1I GCGC 2 cut(s) 191, 263
HinfI GANTC 6 cut(s) 633, 772, 830, 1094, 2071, 2243
HpaII CCGG 6 cut(s) 269, 408, 420, 860, 1035, 1160
HphI GGTGA 4 cut(s) 508, 628, 1346, 1652
Hpy166II GTNNAC 4 cut(s) 119, 311, 856, 1444
Hpy188III TCNNGA 9 cut(s) 482, 722, 1073, 1160, 1772, 1780, 1842, 2090, 2427
Hpy8I GTNNAC 4 cut(s) 119, 311, 856, 1444
Hpy99I CGWCG 1 cut(s) 163
HpyAV CCTTC 8 cut(s) 529, 835, 1067, 1499, 1619, 2063, 2105, 2164
HpyCH4III ACNGT 8 cut(s) 176, 216, 616, 659, 1171, 1249, 1441, 1849
HpyCH4IV ACGT 6 cut(s) 327, 712, 964, 1131, 1338, 2250
HpyF10VI GCNNNNNNNGC 6 cut(s) 281, 980, 1002, 1823, 2147, 2152
HpyF3I CTNAG 3 cut(s) 1647, 1744, 2010
HpySE526I ACGT 6 cut(s) 327, 712, 964, 1131, 1338, 2250
Hsp92II CATG 9 cut(s) 750, 1005, 1107, 1236, 1436, 1456, 1689, 1879, 2300
HspAI GCGC 2 cut(s) 191, 263
Kpn2I TCCGGA 1 cut(s) 1159
KroI GCCGGC 1 cut(s) 419
KroNI GCCGGC 1 cut(s) 421
Ksp22I TGATCA 2 cut(s) 27, 541
Kzo9I GATC 4 cut(s) 27, 541, 700, 1162
LmnI GCTCC 3 cut(s) 238, 1208, 1724
Lsp1109I GCAGC 6 cut(s) 277, 521, 662, 716, 737, 1299
LweI GCATC 5 cut(s) 284, 614, 636, 2083, 2347
MaeI CTAG 5 cut(s) 525, 1014, 1418, 1613, 1929
MaeII ACGT 6 cut(s) 327, 712, 964, 1131, 1338, 2250
MaeIII GTNAC 7 cut(s) 365, 395, 502, 689, 1239, 1334, 1878
MalI GATC 4 cut(s) 29, 543, 702, 1164
MbiI CCGCTC 1 cut(s) 576
MboI GATC 4 cut(s) 27, 541, 700, 1162
MboII GAAGA 7 cut(s) 142, 145, 460, 947, 1103, 1320, 2036
MfeI CAATTG 1 cut(s) 2210
MhlI GDGCHC 4 cut(s) 20, 110, 998, 1729
MlsI TGGCCA 1 cut(s) 683
MluNI TGGCCA 1 cut(s) 683
MlyI GAGTC 1 cut(s) 824
MmeI TCCRAC 3 cut(s) 678, 1359, 1812
Mox20I TGGCCA 1 cut(s) 683
MroI TCCGGA 1 cut(s) 1159
MroNI GCCGGC 1 cut(s) 419
MroXI GAANNNNTTC 1 cut(s) 1642
MscI TGGCCA 1 cut(s) 683
MseI TTAA 9 cut(s) 330, 938, 1173, 1293, 1341, 1356, 1527, 1572, 1577
MslI CAYNNNNRTG 4 cut(s) 641, 917, 1563, 1665
Msp20I TGGCCA 1 cut(s) 683
MspA1I CMGCKG 1 cut(s) 974
MspI CCGG 6 cut(s) 269, 408, 420, 860, 1035, 1160
MspR9I CCNGG 6 cut(s) 640, 680, 822, 860, 1036, 1110
MunI CAATTG 1 cut(s) 2210
MvaI CCWGG 4 cut(s) 640, 680, 822, 1110
MwoI GCNNNNNNNGC 6 cut(s) 281, 980, 1002, 1823, 2147, 2152
NaeI GCCGGC 1 cut(s) 421
NciI CCSGG 2 cut(s) 860, 1036
NcoI CCATGG 1 cut(s) 1432
NdeII GATC 4 cut(s) 27, 541, 700, 1162
NgoMIV GCCGGC 1 cut(s) 419
NlaIII CATG 9 cut(s) 750, 1005, 1107, 1236, 1436, 1456, 1689, 1879, 2300
NlaIV GGNNCC 3 cut(s) 240, 1114, 1151
NmuCI GTSAC 3 cut(s) 689, 1334, 1878
NsbI TGCGCA 1 cut(s) 192
NspI RCATGY 3 cut(s) 1005, 1456, 2300
PaeI GCATGC 1 cut(s) 1456
PaeR7I CTCGAG 1 cut(s) 2097
PcsI WCGNNNNNNNCGW 2 cut(s) 121, 2247
PdiI GCCGGC 1 cut(s) 421
PdmI GAANNNNTTC 1 cut(s) 1642
PfeI GAWTC 5 cut(s) 633, 772, 1094, 2071, 2243
PflMI CCANNNNNTGG 1 cut(s) 1109
PkrI GCNGC 7 cut(s) 262, 267, 536, 677, 731, 752, 1314
PleI GAGTC 1 cut(s) 824
PpsI GAGTC 1 cut(s) 824
Ppu21I YACGTR 1 cut(s) 965
PshAI GACNNNNGTC 1 cut(s) 1104
PshBI ATTAAT 2 cut(s) 1527, 1577
PsiI TTATAA 1 cut(s) 1401
Psp124BI GAGCTC 1 cut(s) 1729
Psp1406I AACGTT 1 cut(s) 1131
Psp6I CCWGG 4 cut(s) 638, 678, 820, 1108
PspGI CCWGG 4 cut(s) 638, 678, 820, 1108
PspN4I GGNNCC 3 cut(s) 240, 1114, 1151
PspPI GGNCC 2 cut(s) 981, 1972
PspXI VCTCGAGB 1 cut(s) 2097
PvuII CAGCTG 1 cut(s) 974
RsaI GTAC 3 cut(s) 310, 875, 1919
RsaNI GTAC 3 cut(s) 309, 874, 1918
RseI CAYNNNNRTG 4 cut(s) 641, 917, 1563, 1665
SacI GAGCTC 1 cut(s) 1729
SaqAI TTAA 9 cut(s) 330, 938, 1173, 1293, 1341, 1356, 1527, 1572, 1577
SatI GCNGC 7 cut(s) 261, 266, 535, 676, 730, 751, 1313
Sau3AI GATC 4 cut(s) 27, 541, 700, 1162
Sau96I GGNCC 2 cut(s) 981, 1972
ScaI AGTACT 1 cut(s) 1919
SchI GAGTC 1 cut(s) 824
ScrFI CCNGG 6 cut(s) 640, 680, 822, 860, 1036, 1110
SduI GDGCHC 4 cut(s) 20, 110, 998, 1729
SfaNI GCATC 5 cut(s) 284, 614, 636, 2083, 2347
SfcI CTRYAG 1 cut(s) 790
Sfr274I CTCGAG 1 cut(s) 2097
SinI GGWCC 1 cut(s) 1972
SlaI CTCGAG 1 cut(s) 2097
SmiMI CAYNNNNRTG 4 cut(s) 641, 917, 1563, 1665
SmlI CTYRAG 3 cut(s) 571, 877, 2097
SmoI CTYRAG 3 cut(s) 571, 877, 2097
SphI GCATGC 1 cut(s) 1456
SsiI CCGC 7 cut(s) 260, 321, 447, 576, 627, 882, 1696
SspI AATATT 1 cut(s) 2223
SspMI CTAG 5 cut(s) 525, 1014, 1418, 1613, 1929
SstI GAGCTC 1 cut(s) 1729
StyD4I CCNGG 6 cut(s) 638, 678, 820, 858, 1034, 1108
StyI CCWWGG 1 cut(s) 1432
TaaI ACNGT 8 cut(s) 176, 216, 616, 659, 1171, 1249, 1441, 1849
TaiI ACGT 6 cut(s) 330, 715, 967, 1134, 1341, 2253
TaqI TCGA 4 cut(s) 927, 1771, 1857, 2098
TaqII GACCGA 1 cut(s) 1613
TatI WGTACW 2 cut(s) 308, 1917
TauI GCSGC 1 cut(s) 263
TfiI GAWTC 5 cut(s) 633, 772, 1094, 2071, 2243
Tru1I TTAA 9 cut(s) 330, 938, 1173, 1293, 1341, 1356, 1527, 1572, 1577
Tru9I TTAA 9 cut(s) 330, 938, 1173, 1293, 1341, 1356, 1527, 1572, 1577
TscAI CASTG 4 cut(s) 20, 619, 703, 1204
TseFI GTSAC 3 cut(s) 689, 1334, 1878
TseI GCWGC 6 cut(s) 265, 534, 675, 729, 750, 1312
Tsp45I GTSAC 3 cut(s) 689, 1334, 1878
TspGWI ACGGA 1 cut(s) 1080
TspRI CASTG 4 cut(s) 20, 619, 703, 1204
Van91I CCANNNNNTGG 1 cut(s) 1109
VpaK11BI GGWCC 1 cut(s) 1972
VspI ATTAAT 2 cut(s) 1527, 1577
XapI RAATTY 7 cut(s) 387, 608, 716, 1413, 1622, 1808, 2260
XceI RCATGY 3 cut(s) 1005, 1456, 2300
XcmI CCANNNNNNNNNTGG 3 cut(s) 1795, 2339, 2384
XhoI CTCGAG 1 cut(s) 2097
XmnI GAANNNNTTC 1 cut(s) 1642
XspI CTAG 5 cut(s) 525, 1014, 1418, 1613, 1929
ZrmI AGTACT 1 cut(s) 1919
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.