Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000233.1

Orthogroup ID

OG0000052

Physical Location & Seq

Genomic Coordinates Reverse (-)

242800 .. 250746

Gene Structure 7947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000233.1_g000055.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2817 bp

atgctttacagcttctatagatcatacttgttccatctgcttagtccagaagaattaatgatgatgcaaattcctgttcatcaaatgatattcattttgctgttatccatatgccgcgcaagtactgctgcactacagatggcaataggtgattgcccaacggagtgtggagatgttatcatcccgtaccctttcgggattggacctaatgcaagttgttactatgacgaatggtttcagatcgactgcaacgaatctaccaaagggaagcctttcttgacgcgtaccaaattggaggtgctgaatatatctaccgaaggaaggcttcaggtgtacagccccgttacattcttctgcgagggaaatgatagtagccaagcggcggatttaaggaacagccctttcgtctactctcaaagctacaacatattcactgcagtgagttgcaattcctttgcctcgttgagttccgcagactttgttgttggcggatgcaggtcagtgtgtgatcaagattctgacaacctgagttgcgatatcggtattaactgttgtcagactagtattcctccatacctcactgttattaatgctaccttatttgagagaaccacaaattgcagtaagtttgccttcctggttgacaaagattggtttgggaacagcaccacttcatcatcaacaatttctgacattacagctaccatgaagagtatgcccaaggttcctgtagcactagactggagcataaacaaccacactaggcaatttgattcatttaacaagttcattgttgatcgtcatcagtatcaactcaatatgtataattactacattaatttctcaacgatttgggacccgtcttgctatatttacacttcgcgtgcagtcaactggtcggaaatttattgttcctgcagcagtggtttcgaaggaaatccgtacctcggagaagattcttgttatgacattgatgaatgcgaggatgctttcgcatgctttggccacaccaagtgtgtgaacgagtatggttggtaccgatgtgaggacaaccgaagaaaagctaaatggatccttgccgcaggtttgagctcgagccttggactcttattgttgcttattggtgtgtggcttggatacaaattcctgaagaaaaaaaaagagataaaacgaaaaaagatgttcttcaagcgaaatggtggtttattattagaacagcaattatcgtcaggtgaagttaatgttgagaaaatcaaattgttcaaatcacaagagttagagaagtctactgataattttaatgtggatagaattcttggtcaaggaggtcaaggtactgtatacaaaggcatgttggaggacgggaaaattgttgctgtgaagaagtctaaaatagttgatgaaagccaactttcagaattcatcaatgaggttgttattctttcccaaattaaccatagaaatgtggttcaactattgggttgttgtttagagacagaagttcctcttttggtttatgaatttataccaaatggaaccctttccaagtatatcacagagcaagttgaagacttcacactaacatggaaaatgcgcttacgaattgccacagaaattgcaggggctctctcgtacttacactatgcagcttcctttccaatttatcatagagatatcaagtctacaaacatactcttagatgataaatacagagcaaaaattgctgactttggaacttcgagatcaattgctattgaccaaactcacctgaccacatcacttgtacatggcacattcggttacttggaccctgaatactttcagtcaagccaatttacggagaaaagtgatgtgtatagcttcggggtagttcttgttgagctcttaacaggacaaaaaccaatttcttttctaaggtctgaggatgaaggcagaagtcttgccacatatttcattctttccatgcacaaagatcgtctatttgaaattgttgatgctcaagttttgaaggaaggatcgaaagcagatattgtaatagtggcaaaccttgcaagaagatgtttgaatttgaacggaaggaagcgccctacaatgagagaagtcacatcagagctagaagggattcaaatgacagaaaagacttctaatggtgaacaaaactatgaagaggttgaatttgttagaactgaattagttgagccatgggatattccttcgagttcaacaggaacaggatcagctttggatgtttgtcgggtttcatcattccatgaaatcccactattatctttcaagctcactccctcgcttccaacgccgcccttgcgaggtgagcttctcccaccgctgccgctccgcctccacgtggttgagcggcctgtctcggcccagcccgggtttctggcccagtttcttcggcgctcttttcatctggcagtcggaatctgcgaagtccgggtttgggttcggagctccgttcttcttcttgctagaaccaaaagcatgtttcttgtcgtcattgtacgagttgtgatcctcttccagcacgccggcaatgatgccgatgtgaaaaatggaaaagtttcggttgatgaactcgagcagtcttgtttccgggtcgggctgatccgatcagaacaacgacttggcttgctggatcaacccctagctctctctgatcaaatcggaggaacccatttcaagaacactgtcggaagttgggatgcagatcaaggtctcgatctcgtggatttgggcctctttggctctctcgcagttgttgaactgaagctcgtgggccccgctcagccagattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

EGF_CA GUB_WAK_bind Pkinase Pkinase_Tyr WAK

Protein Analysis

938

Amino Acids

105.47

Weight (kDa)

5.57

Isoelectric Point (pI)

40.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16090 AT1G16110 AT1G16120 AT1G16130 AT1G16150 AT1G16160 AT1G16260 AT1G16260 AT1G16260 AT1G79670 AT1G79670
fragaria_vesca	FvH4_1g22960 FvH4_3g09860 FvH4_3g10284 FvH4_3g10284 FvH4_3g10540 FvH4_3g24040 FvH4_3g35290 FvH4_3g35290 FvH4_5g06860 FvH4_5g06940 FvH4_6g15920 FvH4_6g15920 FvH4_6g37660 FvH4_6g37670 FvH4_6g37691 FvH4_6g37700 FvH4_6g37710 FvH4_6g38990 FvH4_6g39000 FvH4_6g39020 FvH4_6g39020 FvH4_6g39020 FvH4_6g39021 FvH4_6g39030 FvH4_6g39030 FvH4_6g39031 FvH4_6g39032 FvH4_6g45200 FvH4_6g45200
malus_domestica	MD08G1107900.v1.1 MD09G1145100.v1.1 MD09G1145200.v1.1 MD09G1145300.v1.1 MD09G1145400.v1.1 MD09G1145500.v1.1 MD17G1131600.v1.1 MD17G1131700.v1.1 MD17G1131900.v1.1 MD17G1132000.v1.1
prunus_persica	Prupe.1G188400_v2.0.a1 Prupe.1G188700_v2.0.a1 Prupe.3G180500_v2.0.a1 Prupe.3G180600_v2.0.a1 Prupe.3G180700_v2.0.a1 Prupe.3G181000_v2.0.a1 Prupe.3G181100_v2.0.a1 Prupe.3G181100_v2.0.a1 Prupe.3G181200_v2.0.a1 Prupe.3G181200_v2.0.a1 Prupe.3G181400_v2.0.a1 Prupe.3G181500_v2.0.a1 Prupe.3G181600_v2.0.a1 Prupe.3G181800_v2.0.a1 Prupe.3G181900_v2.0.a1 Prupe.3G182000_v2.0.a1 Prupe.3G182100_v2.0.a1 Prupe.3G182200_v2.0.a1 Prupe.3G182300_v2.0.a1 Prupe.3G182400_v2.0.a1 Prupe.3G182500_v2.0.a1 Prupe.3G182600_v2.0.a1 Prupe.3G182700_v2.0.a1 Prupe.5G051200_v2.0.a1 Prupe.5G051300_v2.0.a1 Prupe.5G051400_v2.0.a1 Prupe.5G051500_v2.0.a1 Prupe.5G051600_v2.0.a1 Prupe.5G051600_v2.0.a1 Prupe.5G051800_v2.0.a1
pyrus_communis	pycom09g06470 pycom09g06490 pycom09g06510 pycom09g06520 pycom09g06570 pycom09g06580 pycom17g12440 pycom17g12450 pycom17g12530
rosa_chinensis	RchiOBHm_Chr2g0117481 RchiOBHm_Chr2g0128321 RchiOBHm_Chr2g0128331 RchiOBHm_Chr2g0128581 RchiOBHm_Chr2g0128591 RchiOBHm_Chr2g0150651 RchiOBHm_Chr2g0150661 RchiOBHm_Chr2g0150741 RchiOBHm_Chr2g0150781 RchiOBHm_Chr2g0152581 RchiOBHm_Chr2g0152591 RchiOBHm_Chr2g0152641 RchiOBHm_Chr2g0152661 RchiOBHm_Chr2g0152711 RchiOBHm_Chr2g0152731 RchiOBHm_Chr2g0152871 RchiOBHm_Chr2g0152881 RchiOBHm_Chr2g0152901 RchiOBHm_Chr2g0152921 RchiOBHm_Chr2g0152931 RchiOBHm_Chr2g0152941 RchiOBHm_Chr3g0469621 RchiOBHm_Chr3g0469631 RchiOBHm_Chr5g0015591 RchiOBHm_Chr5g0046061 RchiOBHm_Chr5g0047341 RchiOBHm_Chr5g0063341 RchiOBHm_Chr5g0063351 RchiOBHm_Chr6g0264381 RchiOBHm_Chr7g0191741 RchiOBHm_Chr7g0210751 RchiOBHm_Chr7g0221871 RchiOBHm_Chr7g0225671 RchiOBHm_Chr7g0225891 RchiOBHm_Chr7g0225901 RchiOBHm_Chr7g0225961 RchiOBHm_Chr7g0225971 RchiOBHm_Chr7g0234031 RchiOBHm_Chr7g0234041
rosa_laevigata	RLG00000001780 RLG00000001784 RLG00000001785 RLG00000001788 RLG00000001789 RLG00000001793 RLG00000001794 RLG00000002941 RLG00000004430 RLG00000014259 RLG00000018349 RLG00000019001 RLG00000019005 RLG00000019011 RLG00000020503 RLG00000020507 RLG00000020648 RLG00000020649 RLG00000020651 RLG00000020652 RLG00000020653 RLG00000020655 RLG00000020656 RLG00000020657 RLG00000023668 RLG00000024331 RLG00000034386 RLG00000035624 RLG00000035625
rosa_multiflora	Rmu_co8401977.1_g000001 Rmu_co8409989.1_g000001 Rmu_co8432067.1_g000001 Rmu_co8491011.1_g000001 Rmu_sc0000580.1_g000085 Rmu_sc0000740.1_g000012 Rmu_sc0000740.1_g000014 Rmu_sc0000837.1_g000041 Rmu_sc0000837.1_g000077 Rmu_sc0001552.1_g000008 Rmu_sc0001617.1_g000001 Rmu_sc0002082.1_g000006 Rmu_sc0002082.1_g000007 Rmu_sc0002082.1_g000022 Rmu_sc0002989.1_g000013 Rmu_sc0003064.1_g000011 Rmu_sc0003127.1_g000003 Rmu_sc0003127.1_g000014 Rmu_sc0003127.1_g000028 Rmu_sc0003127.1_g000032 Rmu_sc0003127.1_g000034 Rmu_sc0003127.1_g000035 Rmu_sc0003127.1_g000054 Rmu_sc0003127.1_g000055 Rmu_sc0003465.1_g000034 Rmu_sc0005223.1_g000021 Rmu_sc0005302.1_g000004 Rmu_sc0005378.1_g000005 Rmu_sc0005378.1_g000007 Rmu_sc0005378.1_g000017 Rmu_sc0005378.1_g000034 Rmu_sc0005378.1_g000039 Rmu_sc0005378.1_g000042 Rmu_sc0005378.1_g000056 Rmu_sc0005378.1_g000057 Rmu_sc0005378.1_g000058 Rmu_sc0006483.1_g000013 Rmu_sc0008775.1_g000006 Rmu_sc0008775.1_g000011 Rmu_sc0009104.1_g000010 Rmu_sc0009104.1_g000011 Rmu_sc0009104.1_g000020 Rmu_sc0010960.1_g000006 Rmu_sc0011737.1_g000002 Rmu_sc0011737.1_g000004 Rmu_sc0012875.1_g000003 Rmu_sc0013122.1_g000002 Rmu_sc0018944.1_g000002 Rmu_sc0020155.1_g000001 Rmu_sc0020156.1_g000001 Rmu_ssc0000233.1_g000012 Rmu_ssc0000233.1_g000013 Rmu_ssc0000233.1_g000030 Rmu_ssc0000233.1_g000044 Rmu_ssc0000233.1_g000047 Rmu_ssc0000233.1_g000052 Rmu_ssc0000233.1_g000054 Rmu_ssc0000233.1_g000055 Rmu_ssc0000233.1_g000080 Rmu_ssc0000233.1_g000082 Rmu_ssc0000233.1_g000087 Rmu_ssc0000233.1_g000094 Rmu_ssc0000480.1_g000060 Rmu_ssc0000480.1_g000061
rosa_roxburghii	Rroxscaffold_1G00017360 Rroxscaffold_1G00017370 Rroxscaffold_1G00060880 Rroxscaffold_2G00095370 Rroxscaffold_2G00095420 Rroxscaffold_2G00095450 Rroxscaffold_2G00095460 Rroxscaffold_2G00095490 Rroxscaffold_2G00095560 Rroxscaffold_2G00095570 Rroxscaffold_2G00096960 Rroxscaffold_2G00097010 Rroxscaffold_2G00126500 Rroxscaffold_3G00233390 Rroxscaffold_3G00233580 Rroxscaffold_3G00263590 Rroxscaffold_6G00411660
rosa_rugosa	Rorug01G0142700.1 Rorug01G0148600.1 Rorug02G0212800 Rorug02G0422400 Rorug02G0434700 Rorug02G0434800 Rorug02G0435000 Rorug02G0435200 Rorug02G0435300 Rorug02G0435400 Rorug02G0435700 Rorug02G0435800 Rorug02G0436200 Rorug02G0436300 Rorug03G0102800 Rorug04G0123600 Rorug04G0123700 Rorug04G0123800 Rorug04G0124000 Rorug04G0124000 Rorug04G0124500 Rorug04G0124700 Rorug04G0124900 Rorug05G0028600.1 Rorug05G0356100 Rorug05G0356800 Rorug06G0011900 Rorug07G0092900 Rorug07G0122800 Rorug07G0232500 Rorug07G0232600 Rorug07G0232700
rosa_samantha	Rh1AG408900 Rh2AG332700 Rh2AG333400 Rh2AG482100 Rh2AG482200 Rh2AG482500 Rh2AG496000 Rh2AG496100 Rh2AG496200 Rh2AG496300 Rh2AG497100 Rh2AG497200 Rh2AG497400 Rh2BG280300 Rh2BG340500 Rh2BG494400 Rh2BG494900 Rh2BG507800 Rh2BG507900 Rh2BG508000 Rh2BG508100 Rh2BG508300 Rh2BG508500 Rh2BG508700 Rh2BG509200 Rh2BG512700 Rh2CG271900 Rh2CG319100 Rh2CG319400 Rh2CG357200 Rh2CG468400 Rh2CG468500 Rh2CG468800 Rh2CG482200 Rh2CG482300 Rh2CG482400 Rh2CG482500 Rh2CG483200 Rh2CG483300 Rh2CG483500 Rh2CG483600 Rh2DG294600 Rh2DG357100 Rh2DG357700 Rh2DG503400 Rh2DG504300 Rh2DG504900 Rh2DG505500 Rh2DG505900 Rh2DG519000 Rh2DG519100 Rh2DG519300 Rh2DG519400 Rh2DG520000 Rh2DG520200 Rh2DG520500 Rh2DG521000 Rh2DG524300 Rh3AG152400 Rh3AG334400 Rh3BG176100 Rh3CG167200 Rh3DG199400 Rh3DG199500 Rh5AG415900 Rh5BG430800 Rh5CG454300 Rh5DG444600 Rh6AG247500 Rh6AG247700 Rh7AG120600 Rh7AG369800 Rh7AG370800 Rh7AG468300 Rh7BG366400 Rh7CG125200 Rh7CG388700 Rh7CG389400 Rh7CG459600 Rh7DG123300 Rh7DG123400 Rh7DG123800 Rh7DG123900 Rh7DG377200
rosa_wichuraiana	Rw0G004850 Rw0G004870 Rw0G013120 Rw1G013520 Rw2G026850 Rw2G026910 Rw2G027120 Rw2G039340 Rw2G039360 Rw2G039410 Rw2G039420 Rw2G039440 Rw2G039520 Rw2G040810 Rw2G040830 Rw2G040850 Rw2G040860 Rw2G040880 Rw2G041210 Rw2G041220 Rw2G041240 Rw2G041250 Rw3G014370 Rw5G010520 Rw5G039070 Rw6G021410 Rw6G021420 Rw7G010280 Rw7G021780 Rw7G031820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	486, 1073
Acc65I	GGTACC	1 cut(s)	1035
AccB1I	GGYRCC	1 cut(s)	1035
AccBSI	CCGCTC	3 cut(s)	2353, 2374, 2804
AccI	GTMKAC	4 cut(s)	408, 1286, 1341, 1682
AccII	CGCG	3 cut(s)	117, 283, 883
AclWI	GGATC	7 cut(s)	1066, 1079, 2023, 2242, 2527, 2620, 2664
AcoI	YGGCCR	1 cut(s)	1003
AcsI	RAATTY	8 cut(s)	69, 903, 1142, 1311, 1418, 1520, 2065, 2174
AcuI	CTGAAG	3 cut(s)	311, 1169, 2807
AcvI	CACGTG	1 cut(s)	2365
AdeI	CACNNNGTG	1 cut(s)	1014
AfiI	CCNNNNNNNGG	9 cut(s)	321, 382, 947, 1045, 1837, 2327, 2365, 2394, 2461
AflIII	ACRYGT	1 cut(s)	281
AhlI	ACTAGT	1 cut(s)	560
AjnI	CCWGG	1 cut(s)	636
AjuI	GAANNNNNNNTTGG	2 cut(s)	2628, 2660
AleI	CACNNNNGTG	1 cut(s)	437
Alw21I	GWGCWC	3 cut(s)	1094, 1884, 2474
Alw26I	GTCTC	3 cut(s)	1487, 2386, 2741
AlwI	GGATC	7 cut(s)	1066, 1079, 2023, 2242, 2527, 2620, 2664
Ama87I	CYCGRG	3 cut(s)	1093, 2393, 2597
AoxI	GGCC	6 cut(s)	1003, 2375, 2385, 2403, 2755, 2797
ApaI	GGGCCC	1 cut(s)	2801
ApeKI	GCWGC	4 cut(s)	128, 918, 1646, 2347
ApoI	RAATTY	8 cut(s)	69, 903, 1142, 1311, 1418, 1520, 2065, 2174
AseI	ATTAAT	3 cut(s)	56, 588, 837
Asp700I	GAANNNNTTC	6 cut(s)	234, 272, 1540, 1818, 2121, 2581
Asp718I	GGTACC	1 cut(s)	1035
AspLEI	GCGC	4 cut(s)	119, 1596, 2085, 2421
AspS9I	GGNCC	8 cut(s)	203, 856, 1807, 2386, 2404, 2755, 2797, 2798
AsuC2I	CCSGG	4 cut(s)	2394, 2395, 2456, 2615
AsuHPI	GGTGA	5 cut(s)	161, 1244, 1757, 2162, 2342
AsuII	TTCGAA	1 cut(s)	930
AvaI	CYCGRG	3 cut(s)	1093, 2393, 2597
AvaII	GGWCC	3 cut(s)	203, 856, 1807
BaeGI	GKGCMC	1 cut(s)	2801
BaeI	ACNNNNGTAYC	2 cut(s)	1027, 1060
BalI	TGGCCA	1 cut(s)	1005
BamHI	GGATCC	1 cut(s)	1071
BanI	GGYRCC	1 cut(s)	1035
BanII	GRGCYC	5 cut(s)	1094, 1627, 1884, 2474, 2801
BauI	CACGAG	2 cut(s)	2744, 2792
BbrPI	CACGTG	1 cut(s)	2365
BbsI	GAAGAC	1 cut(s)	1575
Bbv12I	GWGCWC	3 cut(s)	1094, 1884, 2474
BbvI	GCAGC	4 cut(s)	115, 930, 1658, 2334
BccI	CCATC	2 cut(s)	42, 133
BcgI	CGANNNNNNTGC	4 cut(s)	910, 944, 1955, 1989
BciT130I	CCWGG	1 cut(s)	638
BciVI	GTATCC	1 cut(s)	1130
BclI	TGATCA	2 cut(s)	508, 2677
BcnI	CCSGG	4 cut(s)	2394, 2395, 2456, 2615
BcoDI	GTCTC	3 cut(s)	1487, 2386, 2741
BcuI	ACTAGT	1 cut(s)	560
BfaI	CTAG	6 cut(s)	561, 737, 762, 2114, 2490, 2666
BfmI	CTRYAG	5 cut(s)	16, 134, 435, 729, 916
BfoI	RGCGCY	2 cut(s)	2086, 2422
BfuAI	ACCTGC	2 cut(s)	486, 1073
BfuI	GTATCC	1 cut(s)	1130
BglI	GCCNNNNNGGC	1 cut(s)	2763
BlpI	GCTNAGC	1 cut(s)	2805
BmcAI	AGTACT	1 cut(s)	124
Bme1390I	CCNGG	5 cut(s)	638, 2394, 2395, 2456, 2615
Bme18I	GGWCC	3 cut(s)	203, 856, 1807
BmeT110I	CYCGRG	3 cut(s)	1093, 2393, 2597
BmgT120I	GGNCC	8 cut(s)	203, 856, 1807, 2386, 2404, 2755, 2797, 2798
BmrFI	CCNGG	5 cut(s)	638, 2394, 2395, 2456, 2615
BmrI	ACTGGG	1 cut(s)	2401
BmsI	GCATC	6 cut(s)	54, 482, 976, 1984, 2548, 2713
BmuI	ACTGGG	1 cut(s)	2401
BpiI	GAAGAC	1 cut(s)	1575
BpmI	CTGGAG	1 cut(s)	763
Bpu1102I	GCTNAGC	1 cut(s)	2805
Bpu14I	TTCGAA	1 cut(s)	930
BpuEI	CTTGAG	1 cut(s)	1983
BpuMI	CCSGG	4 cut(s)	2394, 2395, 2456, 2615
BsaAI	YACGTR	1 cut(s)	2365
BsaBI	GATNNNNATC	2 cut(s)	801, 2727
BsaI	GGTCTC	1 cut(s)	2741
BsaJI	CCNNGG	5 cut(s)	720, 946, 1099, 2201, 2393
Bsc4I	CCNNNNNNNGG	9 cut(s)	321, 382, 947, 1045, 1837, 2327, 2365, 2394, 2461
Bse118I	RCCGGY	1 cut(s)	2549
Bse1I	ACTGG	3 cut(s)	746, 899, 2407
Bse3DI	GCAATG	1 cut(s)	2560
Bse8I	GATNNNNATC	2 cut(s)	801, 2727
BseBI	CCWGG	1 cut(s)	638
BseDI	CCNNGG	5 cut(s)	720, 946, 1099, 2201, 2393
BseGI	GGATG	6 cut(s)	180, 497, 991, 1930, 2251, 2728
BseJI	GATNNNNATC	2 cut(s)	801, 2727
BseLI	CCNNNNNNNGG	9 cut(s)	321, 382, 947, 1045, 1837, 2327, 2365, 2394, 2461
BseMI	GCAATG	1 cut(s)	2560
BseMII	CTCAG	2 cut(s)	518, 1911
BseNI	ACTGG	3 cut(s)	746, 899, 2407
BseSI	GKGCMC	1 cut(s)	2801
BseXI	GCAGC	4 cut(s)	115, 930, 1658, 2334
BseYI	CCCAGC	1 cut(s)	2388
BsgI	GTGCAG	2 cut(s)	114, 906
Bsh1236I	CGCG	3 cut(s)	117, 283, 883
BshFI	GGCC	6 cut(s)	1005, 2377, 2387, 2405, 2757, 2799
BshNI	GGYRCC	1 cut(s)	1035
BsiHKAI	GWGCWC	3 cut(s)	1094, 1884, 2474
BsiHKCI	CYCGRG	3 cut(s)	1093, 2393, 2597
BsiSI	CCGG	4 cut(s)	2394, 2455, 2550, 2614
BslFI	GGGAC	1 cut(s)	869
BslI	CCNNNNNNNGG	9 cut(s)	321, 382, 947, 1045, 1837, 2327, 2365, 2394, 2461
BsmAI	GTCTC	3 cut(s)	1487, 2386, 2741
BsmFI	GGGAC	1 cut(s)	869
BsmI	GAATGC	1 cut(s)	983
BsnI	GGCC	6 cut(s)	1005, 2377, 2387, 2405, 2757, 2799
Bso31I	GGTCTC	1 cut(s)	2741
BsoBI	CYCGRG	3 cut(s)	1093, 2393, 2597
Bsp119I	TTCGAA	1 cut(s)	930
Bsp120I	GGGCCC	1 cut(s)	2797
Bsp1286I	GDGCHC	5 cut(s)	1094, 1627, 1884, 2474, 2801
Bsp1407I	TGTACA	2 cut(s)	333, 1783
Bsp1720I	GCTNAGC	1 cut(s)	2805
Bsp19I	CCATGG	1 cut(s)	2201
BspANI	GGCC	6 cut(s)	1005, 2377, 2387, 2405, 2757, 2799
BspCNI	CTCAG	2 cut(s)	519, 1912
BspFNI	CGCG	3 cut(s)	117, 283, 883
BspMAI	CTGCAG	2 cut(s)	439, 920
BspMI	ACCTGC	2 cut(s)	486, 1073
BspPI	GGATC	7 cut(s)	1066, 1079, 2023, 2242, 2527, 2620, 2664
BspT104I	TTCGAA	1 cut(s)	930
BspT107I	GGYRCC	1 cut(s)	1035
BspTNI	GGTCTC	1 cut(s)	2741
BsrBI	CCGCTC	3 cut(s)	2353, 2374, 2804
BsrDI	GCAATG	1 cut(s)	2560
BsrFI	RCCGGY	1 cut(s)	2549
BsrGI	TGTACA	2 cut(s)	333, 1783
BsrI	ACTGG	3 cut(s)	746, 899, 2407
BssAI	RCCGGY	1 cut(s)	2549
BssECI	CCNNGG	5 cut(s)	720, 946, 1099, 2201, 2393
BssNAI	GTATAC	1 cut(s)	1342
BssSI	CACGAG	2 cut(s)	2744, 2792
BssT1I	CCWWGG	3 cut(s)	720, 1099, 2201
Bst1107I	GTATAC	1 cut(s)	1342
Bst2BI	CACGAG	2 cut(s)	2744, 2792
Bst2UI	CCWGG	1 cut(s)	638
Bst4CI	ACNGT	4 cut(s)	551, 583, 1339, 2710
Bst6I	CTCTTC	3 cut(s)	704, 2160, 2543
BstAPI	GCANNNNNTGC	3 cut(s)	125, 1721, 2048
BstAUI	TGTACA	2 cut(s)	333, 1783
BstBAI	YACGTR	1 cut(s)	2365
BstBI	TTCGAA	1 cut(s)	930
BstC8I	GCNNGC	5 cut(s)	885, 997, 2547, 2551, 2651
BstDEI	CTNAG	6 cut(s)	41, 527, 1696, 1913, 1920, 2805
BstDSI	CCRYGG	1 cut(s)	2201
BstF5I	GGATG	6 cut(s)	180, 497, 991, 1930, 2251, 2728
BstFNI	CGCG	3 cut(s)	117, 283, 883
BstH2I	RGCGCY	2 cut(s)	2086, 2422
BstHHI	GCGC	4 cut(s)	119, 1596, 2085, 2421
BstMAI	GTCTC	3 cut(s)	1487, 2386, 2741
BstMWI	GCNNNNNNNGC	7 cut(s)	125, 1721, 2048, 2314, 2323, 2332, 2763
BstNI	CCWGG	1 cut(s)	638
BstNSI	RCATGY	3 cut(s)	999, 1354, 2506
BstSCI	CCNGG	5 cut(s)	636, 2392, 2393, 2454, 2613
BstSFI	CTRYAG	5 cut(s)	16, 134, 435, 729, 916
BstSLI	GKGCMC	1 cut(s)	2801
BstUI	CGCG	3 cut(s)	117, 283, 883
BstV1I	GCAGC	4 cut(s)	115, 930, 1658, 2334
BstV2I	GAAGAC	1 cut(s)	1575
BstX2I	RGATCY	1 cut(s)	1071
BstYI	RGATCY	1 cut(s)	1071
BstZ17I	GTATAC	1 cut(s)	1342
BsuI	GTATCC	1 cut(s)	1130
BsuRI	GGCC	6 cut(s)	1005, 2377, 2387, 2405, 2757, 2799
BtgI	CCRYGG	1 cut(s)	2201
BtsCI	GGATG	6 cut(s)	180, 497, 991, 1930, 2251, 2728
BtsI	GCAGTG	3 cut(s)	432, 444, 928
BtsIMutI	CAGTG	6 cut(s)	432, 444, 507, 579, 928, 2706
BveI	ACCTGC	2 cut(s)	486, 1073
Cac8I	GCNNGC	5 cut(s)	885, 997, 2547, 2551, 2651
CfoI	GCGC	4 cut(s)	119, 1596, 2085, 2421
Cfr10I	RCCGGY	1 cut(s)	2549
Cfr13I	GGNCC	8 cut(s)	203, 856, 1807, 2386, 2404, 2755, 2797, 2798
Cfr9I	CCCGGG	1 cut(s)	2393
CseI	GACGC	1 cut(s)	289
CspCI	CAANNNNNGTGG	4 cut(s)	1597, 1632, 1762, 1797
CviAII	CATG	9 cut(s)	706, 996, 1351, 1584, 1787, 1963, 2202, 2270, 2503
DdeI	CTNAG	6 cut(s)	41, 527, 1696, 1913, 1920, 2805
DraIII	CACNNNGTG	1 cut(s)	1014
EaeI	YGGCCR	1 cut(s)	1003
Eam1104I	CTCTTC	3 cut(s)	704, 2160, 2543
EarI	CTCTTC	3 cut(s)	704, 2160, 2543
EciI	GGCGGA	3 cut(s)	398, 504, 2345
Ecl136II	GAGCTC	3 cut(s)	1092, 1882, 2472
Eco130I	CCWWGG	3 cut(s)	720, 1099, 2201
Eco24I	GRGCYC	5 cut(s)	1094, 1627, 1884, 2474, 2801
Eco31I	GGTCTC	1 cut(s)	2741
Eco32I	GATATC	2 cut(s)	538, 1675
Eco47I	GGWCC	3 cut(s)	203, 856, 1807
Eco53kI	GAGCTC	3 cut(s)	1092, 1882, 2472
Eco57I	CTGAAG	3 cut(s)	311, 1169, 2807
Eco72I	CACGTG	1 cut(s)	2365
Eco88I	CYCGRG	3 cut(s)	1093, 2393, 2597
EcoICRI	GAGCTC	3 cut(s)	1092, 1882, 2472
EcoO109I	RGGNCCY	2 cut(s)	856, 2798
EcoRI	GAATTC	2 cut(s)	1311, 1418
EcoRII	CCWGG	1 cut(s)	636
EcoRV	GATATC	2 cut(s)	538, 1675
EcoT14I	CCWWGG	3 cut(s)	720, 1099, 2201
EcoT38I	GRGCYC	5 cut(s)	1094, 1627, 1884, 2474, 2801
ErhI	CCWWGG	3 cut(s)	720, 1099, 2201
FaeI	CATG	9 cut(s)	709, 999, 1354, 1587, 1790, 1966, 2205, 2273, 2506
FaqI	GGGAC	1 cut(s)	869
FatI	CATG	9 cut(s)	705, 995, 1350, 1583, 1786, 1962, 2201, 2269, 2502
FauI	CCCGC	1 cut(s)	2809
FauNDI	CATATG	1 cut(s)	110
FbaI	TGATCA	2 cut(s)	508, 2677
FblI	GTMKAC	4 cut(s)	408, 1286, 1341, 1682
FokI	GGATG	6 cut(s)	167, 504, 998, 1937, 2258, 2735
FriOI	GRGCYC	5 cut(s)	1094, 1627, 1884, 2474, 2801
FspBI	CTAG	6 cut(s)	561, 737, 762, 2114, 2490, 2666
GlaI	GCGC	4 cut(s)	118, 1595, 2084, 2420
GsaI	CCCAGC	1 cut(s)	2392
GsuI	CTGGAG	1 cut(s)	763
HaeII	RGCGCY	2 cut(s)	2086, 2422
HaeIII	GGCC	6 cut(s)	1005, 2377, 2387, 2405, 2757, 2799
HapII	CCGG	4 cut(s)	2394, 2455, 2550, 2614
HgaI	GACGC	1 cut(s)	289
HhaI	GCGC	4 cut(s)	119, 1596, 2085, 2421
Hin1II	CATG	9 cut(s)	709, 999, 1354, 1587, 1790, 1966, 2205, 2273, 2506
Hin6I	GCGC	4 cut(s)	117, 1594, 2083, 2419
HinP1I	GCGC	4 cut(s)	117, 1594, 2083, 2419
HincII	GTYRAC	2 cut(s)	643, 892
HindII	GTYRAC	2 cut(s)	643, 892
HinfI	GANTC	7 cut(s)	254, 515, 773, 956, 1104, 2122, 2442
HpaII	CCGG	4 cut(s)	2394, 2455, 2550, 2614
HphI	GGTGA	5 cut(s)	161, 1244, 1757, 2162, 2342
Hpy166II	GTNNAC	9 cut(s)	334, 409, 643, 892, 1021, 1287, 1342, 1683, 2153
Hpy188III	TCNNGA	8 cut(s)	47, 196, 277, 512, 1147, 1740, 2701, 2738
Hpy8I	GTNNAC	9 cut(s)	334, 409, 643, 892, 1021, 1287, 1342, 1683, 2153
HpyCH4III	ACNGT	4 cut(s)	551, 583, 1339, 2710
HpyCH4IV	ACGT	1 cut(s)	2364
HpyF10VI	GCNNNNNNNGC	7 cut(s)	125, 1721, 2048, 2314, 2323, 2332, 2763
HpyF3I	CTNAG	6 cut(s)	41, 527, 1696, 1913, 1920, 2805
HpySE526I	ACGT	1 cut(s)	2364
Hsp92II	CATG	9 cut(s)	709, 999, 1354, 1587, 1790, 1966, 2205, 2273, 2506
HspAI	GCGC	4 cut(s)	117, 1594, 2083, 2419
KflI	GGGWCCC	1 cut(s)	856
KpnI	GGTACC	1 cut(s)	1039
KroI	GCCGGC	1 cut(s)	2549
KroNI	GCCGGC	1 cut(s)	2551
Ksp22I	TGATCA	2 cut(s)	508, 2677
LmnI	GCTCC	4 cut(s)	744, 2358, 2469, 2477
Lsp1109I	GCAGC	4 cut(s)	115, 930, 1658, 2334
LweI	GCATC	6 cut(s)	54, 482, 976, 1984, 2548, 2713
MaeI	CTAG	6 cut(s)	561, 737, 762, 2114, 2490, 2666
MaeII	ACGT	1 cut(s)	2364
MaeIII	GTNAC	4 cut(s)	218, 343, 1799, 2101
MbiI	CCGCTC	3 cut(s)	2353, 2374, 2804
MfeI	CAATTG	1 cut(s)	1746
MflI	RGATCY	1 cut(s)	1071
MhlI	GDGCHC	5 cut(s)	1094, 1627, 1884, 2474, 2801
MlsI	TGGCCA	1 cut(s)	1005
MluI	ACGCGT	1 cut(s)	281
MluNI	TGGCCA	1 cut(s)	1005
MlyI	GAGTC	1 cut(s)	1098
MmeI	TCCRAC	5 cut(s)	879, 1335, 2336, 2419, 2692
Mox20I	TGGCCA	1 cut(s)	1005
MroNI	GCCGGC	1 cut(s)	2549
MroXI	GAANNNNTTC	6 cut(s)	234, 272, 1540, 1818, 2121, 2581
MscI	TGGCCA	1 cut(s)	1005
MslI	CAYNNNNRTG	3 cut(s)	437, 1461, 1582
Msp20I	TGGCCA	1 cut(s)	1005
MspA1I	CMGCKG	1 cut(s)	2347
MspI	CCGG	4 cut(s)	2394, 2455, 2550, 2614
MspR9I	CCNGG	5 cut(s)	638, 2394, 2395, 2456, 2615
MunI	CAATTG	1 cut(s)	1746
Mva1269I	GAATGC	1 cut(s)	983
MvaI	CCWGG	1 cut(s)	638
MvnI	CGCG	3 cut(s)	117, 283, 883
MwoI	GCNNNNNNNGC	7 cut(s)	125, 1721, 2048, 2314, 2323, 2332, 2763
NaeI	GCCGGC	1 cut(s)	2551
NciI	CCSGG	4 cut(s)	2394, 2395, 2456, 2615
NcoI	CCATGG	1 cut(s)	2201
NdeI	CATATG	1 cut(s)	110
NgoMIV	GCCGGC	1 cut(s)	2549
NlaIII	CATG	9 cut(s)	709, 999, 1354, 1587, 1790, 1966, 2205, 2273, 2506
NmeAIII	GCCGAG	1 cut(s)	2363
NmuCI	GTSAC	1 cut(s)	2101
NspI	RCATGY	3 cut(s)	999, 1354, 2506
NspV	TTCGAA	1 cut(s)	930
OliI	CACNNNNGTG	1 cut(s)	437
PaeI	GCATGC	1 cut(s)	999
PaeR7I	CTCGAG	2 cut(s)	1093, 2597
PcsI	WCGNNNNNNNCGW	2 cut(s)	249, 2445
PctI	GAATGC	1 cut(s)	983
PdiI	GCCGGC	1 cut(s)	2551
PdmI	GAANNNNTTC	6 cut(s)	234, 272, 1540, 1818, 2121, 2581
PfeI	GAWTC	6 cut(s)	254, 515, 773, 956, 2122, 2442
PleI	GAGTC	1 cut(s)	1098
PmaCI	CACGTG	1 cut(s)	2365
PmlI	CACGTG	1 cut(s)	2365
PpsI	GAGTC	1 cut(s)	1098
Ppu21I	YACGTR	1 cut(s)	2365
PpuMI	RGGWCCY	1 cut(s)	856
PshBI	ATTAAT	3 cut(s)	56, 588, 837
Psp124BI	GAGCTC	3 cut(s)	1094, 1884, 2474
Psp5II	RGGWCCY	1 cut(s)	856
Psp6I	CCWGG	1 cut(s)	636
PspCI	CACGTG	1 cut(s)	2365
PspFI	CCCAGC	1 cut(s)	2388
PspGI	CCWGG	1 cut(s)	636
PspOMI	GGGCCC	1 cut(s)	2797
PspPI	GGNCC	8 cut(s)	203, 856, 1807, 2386, 2404, 2755, 2797, 2798
PspPPI	RGGWCCY	1 cut(s)	856
PspXI	VCTCGAGB	2 cut(s)	1093, 2597
PstI	CTGCAG	2 cut(s)	439, 920
PsuI	RGATCY	1 cut(s)	1071
RseI	CAYNNNNRTG	3 cut(s)	437, 1461, 1582
SacI	GAGCTC	3 cut(s)	1094, 1884, 2474
Sau96I	GGNCC	8 cut(s)	203, 856, 1807, 2386, 2404, 2755, 2797, 2798
ScaI	AGTACT	1 cut(s)	124
SchI	GAGTC	1 cut(s)	1098
ScrFI	CCNGG	5 cut(s)	638, 2394, 2395, 2456, 2615
SduI	GDGCHC	5 cut(s)	1094, 1627, 1884, 2474, 2801
SfaNI	GCATC	6 cut(s)	54, 482, 976, 1984, 2548, 2713
SfcI	CTRYAG	5 cut(s)	16, 134, 435, 729, 916
Sfr274I	CTCGAG	2 cut(s)	1093, 2597
SfuI	TTCGAA	1 cut(s)	930
SinI	GGWCC	3 cut(s)	203, 856, 1807
SlaI	CTCGAG	2 cut(s)	1093, 2597
SmaI	CCCGGG	1 cut(s)	2395
SmiMI	CAYNNNNRTG	3 cut(s)	437, 1461, 1582
SmlI	CTYRAG	3 cut(s)	1093, 1998, 2597
SmoI	CTYRAG	3 cut(s)	1093, 1998, 2597
SpeI	ACTAGT	1 cut(s)	560
SphI	GCATGC	1 cut(s)	999
SspMI	CTAG	6 cut(s)	561, 737, 762, 2114, 2490, 2666
SstI	GAGCTC	3 cut(s)	1094, 1884, 2474
StyD4I	CCNGG	5 cut(s)	636, 2392, 2393, 2454, 2613
StyI	CCWWGG	3 cut(s)	720, 1099, 2201
TaaI	ACNGT	4 cut(s)	551, 583, 1339, 2710
TaiI	ACGT	1 cut(s)	2367
TaqI	TCGA	8 cut(s)	243, 930, 1094, 1739, 2018, 2216, 2598, 2739
TatI	WGTACW	3 cut(s)	122, 333, 1783
TauI	GCSGC	6 cut(s)	117, 383, 1082, 2320, 2353, 2377
TfiI	GAWTC	6 cut(s)	254, 515, 773, 956, 2122, 2442
TscAI	CASTG	6 cut(s)	439, 444, 507, 586, 928, 2713
TseFI	GTSAC	1 cut(s)	2101
TseI	GCWGC	4 cut(s)	128, 918, 1646, 2347
Tsp45I	GTSAC	1 cut(s)	2101
TspGWI	ACGGA	5 cut(s)	176, 930, 1853, 2088, 2464
TspMI	CCCGGG	1 cut(s)	2393
TspRI	CASTG	6 cut(s)	439, 444, 507, 586, 928, 2713
VpaK11BI	GGWCC	3 cut(s)	203, 856, 1807
VspI	ATTAAT	3 cut(s)	56, 588, 837
XapI	RAATTY	8 cut(s)	69, 903, 1142, 1311, 1418, 1520, 2065, 2174
XceI	RCATGY	3 cut(s)	999, 1354, 2506
XhoI	CTCGAG	2 cut(s)	1093, 2597
XmaI	CCCGGG	1 cut(s)	2393
XmiI	GTMKAC	4 cut(s)	408, 1286, 1341, 1682
XmnI	GAANNNNTTC	6 cut(s)	234, 272, 1540, 1818, 2121, 2581
XspI	CTAG	6 cut(s)	561, 737, 762, 2114, 2490, 2666
ZrmI	AGTACT	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.