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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 600 |
| AciI | CCGC | 2 cut(s) | 105, 586 |
| AcsI | RAATTY | 2 cut(s) | 70, 239 |
| AcuI | CTGAAG | 1 cut(s) | 594 |
| AfaI | GTAC | 1 cut(s) | 506 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 34, 251, 311, 523 |
| AgsI | TTSAA | 2 cut(s) | 474, 616 |
| AjnI | CCWGG | 3 cut(s) | 9, 27, 326 |
| AleI | CACNNNNGTG | 1 cut(s) | 348 |
| Alw26I | GTCTC | 2 cut(s) | 83, 167 |
| ApoI | RAATTY | 2 cut(s) | 70, 239 |
| AseI | ATTAAT | 1 cut(s) | 23 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 469 |
| AsuHPI | GGTGA | 1 cut(s) | 592 |
| BceAI | ACGGC | 2 cut(s) | 432, 479 |
| BciT130I | CCWGG | 3 cut(s) | 11, 29, 328 |
| BcoDI | GTCTC | 2 cut(s) | 83, 167 |
| BisI | GCNGC | 1 cut(s) | 587 |
| BlsI | GCNGC | 1 cut(s) | 588 |
| Bme1390I | CCNGG | 3 cut(s) | 11, 29, 328 |
| BmrFI | CCNGG | 3 cut(s) | 11, 29, 328 |
| BoxI | GACNNNNGTC | 1 cut(s) | 322 |
| BpuEI | CTTGAG | 2 cut(s) | 35, 392 |
| BsaJI | CCNNGG | 2 cut(s) | 305, 444 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 34, 251, 311, 523 |
| Bse1I | ACTGG | 2 cut(s) | 502, 540 |
| Bse3DI | GCAATG | 2 cut(s) | 210, 438 |
| BseBI | CCWGG | 3 cut(s) | 11, 29, 328 |
| BseDI | CCNNGG | 2 cut(s) | 305, 444 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 34, 251, 311, 523 |
| BseMI | GCAATG | 2 cut(s) | 210, 438 |
| BseNI | ACTGG | 2 cut(s) | 502, 540 |
| BseRI | GAGGAG | 1 cut(s) | 327 |
| BslFI | GGGAC | 1 cut(s) | 352 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 34, 251, 311, 523 |
| BsmAI | GTCTC | 2 cut(s) | 83, 167 |
| BsmFI | GGGAC | 1 cut(s) | 352 |
| BsmI | GAATGC | 1 cut(s) | 611 |
| Bsp143I | GATC | 2 cut(s) | 249, 552 |
| Bsp19I | CCATGG | 1 cut(s) | 444 |
| BspACI | CCGC | 2 cut(s) | 105, 586 |
| BsrDI | GCAATG | 2 cut(s) | 210, 438 |
| BsrI | ACTGG | 2 cut(s) | 502, 540 |
| BssECI | CCNNGG | 2 cut(s) | 305, 444 |
| BssMI | GATC | 2 cut(s) | 249, 552 |
| BssT1I | CCWWGG | 2 cut(s) | 305, 444 |
| Bst2UI | CCWGG | 3 cut(s) | 11, 29, 328 |
| Bst4CI | ACNGT | 1 cut(s) | 347 |
| Bst6I | CTCTTC | 1 cut(s) | 204 |
| BstDEI | CTNAG | 1 cut(s) | 276 |
| BstDSI | CCRYGG | 1 cut(s) | 444 |
| BstKTI | GATC | 2 cut(s) | 252, 555 |
| BstMAI | GTCTC | 2 cut(s) | 83, 167 |
| BstMBI | GATC | 2 cut(s) | 249, 552 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 592 |
| BstNI | CCWGG | 3 cut(s) | 11, 29, 328 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 322 |
| BstSCI | CCNGG | 3 cut(s) | 9, 27, 326 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 350 |
| BtgI | CCRYGG | 1 cut(s) | 444 |
| BtsIMutI | CAGTG | 2 cut(s) | 352, 547 |
| CseI | GACGC | 2 cut(s) | 209, 611 |
| Csp6I | GTAC | 1 cut(s) | 505 |
| CviAII | CATG | 2 cut(s) | 320, 445 |
| CviJI | RGCY | 6 cut(s) | 41, 215, 304, 494, 589, 595 |
| CviKI_1 | RGCY | 6 cut(s) | 41, 215, 304, 494, 589, 595 |
| CviQI | GTAC | 1 cut(s) | 505 |
| DdeI | CTNAG | 1 cut(s) | 276 |
| DpnI | GATC | 2 cut(s) | 251, 554 |
| DpnII | GATC | 2 cut(s) | 249, 552 |
| Eam1104I | CTCTTC | 1 cut(s) | 204 |
| EarI | CTCTTC | 1 cut(s) | 204 |
| Eco130I | CCWWGG | 2 cut(s) | 305, 444 |
| Eco32I | GATATC | 2 cut(s) | 261, 379 |
| Eco57I | CTGAAG | 1 cut(s) | 594 |
| EcoRII | CCWGG | 3 cut(s) | 9, 27, 326 |
| EcoRV | GATATC | 2 cut(s) | 261, 379 |
| EcoT14I | CCWWGG | 2 cut(s) | 305, 444 |
| ErhI | CCWWGG | 2 cut(s) | 305, 444 |
| FaeI | CATG | 2 cut(s) | 323, 448 |
| FaiI | YATR | 8 cut(s) | 224, 321, 427, 446, 483, 489, 514, 548 |
| FaqI | GGGAC | 1 cut(s) | 352 |
| FatI | CATG | 2 cut(s) | 319, 444 |
| FblI | GTMKAC | 1 cut(s) | 600 |
| Fnu4HI | GCNGC | 1 cut(s) | 587 |
| Fsp4HI | GCNGC | 1 cut(s) | 587 |
| GluI | GCNGC | 1 cut(s) | 587 |
| HgaI | GACGC | 2 cut(s) | 209, 611 |
| Hin1II | CATG | 2 cut(s) | 323, 448 |
| HinfI | GANTC | 6 cut(s) | 14, 56, 120, 272, 323, 625 |
| HphI | GGTGA | 1 cut(s) | 592 |
| Hpy166II | GTNNAC | 2 cut(s) | 601, 634 |
| Hpy188I | TCNGA | 2 cut(s) | 254, 574 |
| Hpy8I | GTNNAC | 2 cut(s) | 601, 634 |
| Hpy99I | CGWCG | 1 cut(s) | 418 |
| HpyAV | CCTTC | 2 cut(s) | 262, 569 |
| HpyCH4III | ACNGT | 1 cut(s) | 347 |
| HpyCH4IV | ACGT | 1 cut(s) | 220 |
| HpyCH4V | TGCA | 1 cut(s) | 140 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 592 |
| HpyF3I | CTNAG | 1 cut(s) | 276 |
| HpySE526I | ACGT | 1 cut(s) | 220 |
| Hsp92II | CATG | 2 cut(s) | 323, 448 |
| Kzo9I | GATC | 2 cut(s) | 249, 552 |
| LpnPI | CCDG | 8 cut(s) | 14, 23, 41, 313, 340, 447, 515, 553 |
| MaeII | ACGT | 1 cut(s) | 220 |
| MaeIII | GTNAC | 3 cut(s) | 57, 197, 535 |
| MalI | GATC | 2 cut(s) | 251, 554 |
| MboI | GATC | 2 cut(s) | 249, 552 |
| MboII | GAAGA | 4 cut(s) | 221, 402, 462, 547 |
| MluCI | AATT | 6 cut(s) | 32, 70, 239, 405, 449, 456 |
| MlyI | GAGTC | 3 cut(s) | 65, 332, 619 |
| MnlI | CCTC | 7 cut(s) | 162, 205, 305, 308, 328, 367, 576 |
| MroXI | GAANNNNTTC | 1 cut(s) | 469 |
| MseI | TTAA | 4 cut(s) | 23, 284, 297, 522 |
| MslI | CAYNNNNRTG | 3 cut(s) | 348, 424, 443 |
| MspA1I | CMGCKG | 1 cut(s) | 105 |
| MspR9I | CCNGG | 3 cut(s) | 11, 29, 328 |
| Mva1269I | GAATGC | 1 cut(s) | 611 |
| MvaI | CCWGG | 3 cut(s) | 11, 29, 328 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 592 |
| NcoI | CCATGG | 1 cut(s) | 444 |
| NdeII | GATC | 2 cut(s) | 249, 552 |
| NlaIII | CATG | 2 cut(s) | 323, 448 |
| NmuCI | GTSAC | 2 cut(s) | 57, 197 |
| OliI | CACNNNNGTG | 1 cut(s) | 348 |
| PctI | GAATGC | 1 cut(s) | 611 |
| PdmI | GAANNNNTTC | 1 cut(s) | 469 |
| PfeI | GAWTC | 3 cut(s) | 14, 120, 272 |
| PfoI | TCCNGGA | 3 cut(s) | 9, 27, 326 |
| PkrI | GCNGC | 1 cut(s) | 588 |
| PleI | GAGTC | 3 cut(s) | 64, 331, 619 |
| PpsI | GAGTC | 3 cut(s) | 64, 331, 619 |
| PshAI | GACNNNNGTC | 1 cut(s) | 322 |
| PshBI | ATTAAT | 1 cut(s) | 23 |
| Psp6I | CCWGG | 3 cut(s) | 9, 27, 326 |
| PspGI | CCWGG | 3 cut(s) | 9, 27, 326 |
| RsaI | GTAC | 1 cut(s) | 506 |
| RsaNI | GTAC | 1 cut(s) | 505 |
| RseI | CAYNNNNRTG | 3 cut(s) | 348, 424, 443 |
| SaqAI | TTAA | 4 cut(s) | 23, 284, 297, 522 |
| SatI | GCNGC | 1 cut(s) | 587 |
| Sau3AI | GATC | 2 cut(s) | 249, 552 |
| SchI | GAGTC | 3 cut(s) | 65, 332, 619 |
| ScrFI | CCNGG | 3 cut(s) | 11, 29, 328 |
| SetI | ASST | 3 cut(s) | 223, 282, 339 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 348, 424, 443 |
| SmlI | CTYRAG | 2 cut(s) | 50, 371 |
| SmoI | CTYRAG | 2 cut(s) | 50, 371 |
| Sse9I | AATT | 6 cut(s) | 32, 70, 239, 405, 449, 456 |
| SsiI | CCGC | 2 cut(s) | 105, 586 |
| StyD4I | CCNGG | 3 cut(s) | 9, 27, 326 |
| StyI | CCWWGG | 2 cut(s) | 305, 444 |
| TaaI | ACNGT | 1 cut(s) | 347 |
| TaiI | ACGT | 1 cut(s) | 223 |
| TaqI | TCGA | 1 cut(s) | 413 |
| TasI | AATT | 6 cut(s) | 32, 70, 239, 405, 449, 456 |
| TatI | WGTACW | 1 cut(s) | 504 |
| TauI | GCSGC | 1 cut(s) | 589 |
| TfiI | GAWTC | 3 cut(s) | 14, 120, 272 |
| Tru1I | TTAA | 4 cut(s) | 23, 284, 297, 522 |
| Tru9I | TTAA | 4 cut(s) | 23, 284, 297, 522 |
| TscAI | CASTG | 2 cut(s) | 352, 547 |
| TseFI | GTSAC | 2 cut(s) | 57, 197 |
| Tsp45I | GTSAC | 2 cut(s) | 57, 197 |
| TspDTI | ATGAA | 2 cut(s) | 498, 504 |
| TspGWI | ACGGA | 1 cut(s) | 280 |
| TspRI | CASTG | 2 cut(s) | 352, 547 |
| VspI | ATTAAT | 1 cut(s) | 23 |
| XapI | RAATTY | 2 cut(s) | 70, 239 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 25 |
| XmiI | GTMKAC | 1 cut(s) | 600 |
| XmnI | GAANNNNTTC | 1 cut(s) | 469 |